Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dichanthelium_20oligosanthes_20[genbank_20GCA_5F001633215.2_202016- 09-29] 17,436 sequences; 589,166,415 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq9737 105 1e-17 seq7477 98.7 1e-15 >seq9737 Length=173456 Score = 105 bits (116), Expect = 1e-17 Identities = 159/225 (71%), Gaps = 6/225 (3%) Strand=Plus/Plus Query 76754 CCTCCCTGATCTATATATCTGGCAGTGTTATTATAAACTCTCAACATTGGAATAATGCCG 76813 || || ||||| | ||| | |||||| | ||| |||| | || ||| |||| ||| ||| Sbjct 49272 CCACCTTGATCAACATAACGGGCAGTATCATTGAAAACACGCAGCATAGGAACAATTCCG 49331 Query 76814 TTAGATGTACCATTTGTTCCAGAAATATAACTTCCACATGCACGAATATTACTAATAGAT 76873 ||||| || ||||||||||| ||| ||||| ||| || |||||||| || || Sbjct 49332 TTAGAAGTTCCATTTGTTCCTCGAATGTAACTCCCAGTAGCTCGAATATTGTGGATTGAG 49391 Query 76874 AGGCCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAGCGTTTC---AATGTGTCATAG 76930 | || |||||||| || ||| || | |||||| || | | || ||||| Sbjct 49392 ACACCAATTCCTCCAGCAGATTTGCTTATCACAGCACA---TTCCGAGAGAGTATCATAA 49448 Query 76931 ATGCCCTCTATACTATCATCCATCATGTTAAGAAGAAAACAGCTA 76975 || ||||| ||||||||||| ||||| | ||| ||||||||| Sbjct 49449 ATTCCCTCAATACTATCATCTTTCATGCAGATAAGGAAACAGCTA 49493 >seq7477 Length=85115 Score = 98.7 bits (108), Expect = 1e-15 Identities = 155/222 (70%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 76754 CCTCCCTGATCTATATATCTGGCAGTGTTATTATAAACTCTCAACATTGGAATAATGCCG 76813 || || ||||| | ||| | ||||| | ||| | || | | ||| || | ||| || Sbjct 75789 CCACCTTGATCAACATAACGAGCAGTATCATTGAAGACACGTAGCATAGGTACAATTCCA 75730 Query 76814 TTAGATGTACCATTTGTTCCAGAAATATAACTTCCACATGCACGAATATTACTAATAGAT 76873 || ||||| ||||||||||| ||| ||||| ||| ||||||||||| || || Sbjct 75729 TTGGATGTTCCATTTGTTCCTCGAATGTAACTCCCAGTAGCACGAATATTGTGAACTGAG 75670 Query 76874 AGGCCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAGCGTTTCAATGTGTCATAGATG 76933 | ||| |||||||| || ||| || | |||||| |||| || ||||| || Sbjct 75669 ACGCCAATTCCTCCAGCAGATTTGCTTATGACAGCACATTCCTTCAGAGTATCATAAATT 75610 Query 76934 CCCTCTATACTATCATCCATCATGTTAAGAAGAAAACAGCTA 76975 ||||| ||||| ||||| ||||| | ||| ||||||||| Sbjct 75609 CCCTCAATACTGTCATCTTTCATGCAGATAAGGAAACAGCTA 75568 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712779015947520