Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dichanthelium_20oligosanthes_20[genbank_20GCA_5F001633215.2_202016- 09-29] 17,436 sequences; 589,166,415 total letters Query= NC_031235.1 Length=194437 Score E Sequences producing significant alignments: (Bits) Value seq16913 297 2e-75 seq10113 203 4e-47 seq12982 196 6e-45 seq8160 104 3e-17 seq12273 102 1e-16 >seq16913 Length=117496 Score = 297 bits (328), Expect = 2e-75 Identities = 534/776 (69%), Gaps = 26/776 (3%) Strand=Plus/Minus Query 183195 CTTCTGCGAATGGATTACCAGCACTAACAACCGCCTCTATGTGGGTTGGTTTGGCACACT 183254 ||||||| | ||||| || ||||| | ||||| || || | || ||||| || | Sbjct 95222 CTTCTGCAACTGGATAACTAGCACCGAAAACCGTCTTTACATCGGATGGTTCGGTGTTTT 95163 Query 183255 GATGATTCCAACTCTGTTGGCAGCAACCATCTGCTTCATCGTTGCCTTCGTCGCTGCTCC 183314 |||||| | || | || | ||||| | || || | |||||| |||||||||| Sbjct 95162 GATGATCCGTACCTTATTAACCGCAACTTCCATATTTATTATCGCCTTCATCGCTGCTCC 95103 Query 183315 TCCTGTGGACATCGACGGCATCCGCGAACCCGTTGCTGGGTCGCTCATGTATGGAAACAA 183374 ||| || || || || || || || || || ||| || | || | | ||| ||||||| Sbjct 95102 TCCGGTAGATATTGATGGTATTCGTGAGCCTGTTTCTAGTTCTTTACTTTATAGAAACAA 95043 Query 183375 CATCATCTCTGGTGCAGTTGTTCCTTC-----------TTCCAAC-------GCAATTGG 183416 || || |||||||| || ||||| | |||| || ||||| || Sbjct 95042 TATTATATCTGGTGCTATTATTCCTGCAGAAACTATTATTCCTACTTCTGTGGCAATCGG 94983 Query 183417 ACTTCACTTCTATCCCATCTGGGAAGCAGCATCACTCGATGAGTGGCTGTATAACGGTGG 183476 | | || || || || || ||| || | ||||| | ||||| ||| | || || |||| Sbjct 94982 ATTGCATTTTTACCCAATTTGGAAAACTGCATCTGTTGATGAATGGTTATAAAATTGTGG 94923 Query 183477 TCCTTACCAACTCGTAGTCTTCCACTTCCTCATTGGCGTCTTCTGCTACATGGGTCGTGA 183536 ||||| | || | || | | || | |||| || || || ||||||||||| Sbjct 94922 TCCTTCTGAGCTAATTGTTCTATATTTTTTACTTGGTGTAGCTTGTTATATGGGTCGTGA 94863 Query 183537 GTGGG-AATTGTCTTACCGTCTCGGTATGCGTCCTTGGATCTGTGTTGCTTATAGCGCAC 183595 ||||| || | || |||||| |||| ||| |||||||| | |||| ||| || | Sbjct 94862 GTGGGGAACTTAGTTTCCGTCTGGGTACGCGCCCTTGGATTGCTATTGCATATTCAGCTC 94803 Query 183596 CTGTTGCTGCTGCAACCGCTGTCTTCCTGGTCTATCCTTTCGGTCAAGGTTCTTTTAGTG 183655 || |||| ||||| | ||||| ||| |||| || || | |||||||| ||| | Sbjct 94802 CT-TTGCAGCTGCTAGTGCTGTTTTCTTGGTTTACTCTATTGGTCAAGGGAGTTTCTCCG 94744 Query 183656 ATGGTATGCCCCTGGGTATCAGTGGCACCTTTAACTATATGCTTGTCTTCCAAGCAGAGC 183715 ||||| |||| | || || ||| | || |||| ||| |||| ||||| | ||||| Sbjct 94743 ATGGTGTGCCTTTAGGAATATCTGGTAT-TTCAACTTTATAATTGTATTCCAGGTAGAGC 94685 Query 183716 ACAACATCCTGATGCACCCCTTCCACATGCTGGGTGTCGCTGGTGTCTTCGGTGGTTCTC 183775 |||||||||| ||||| | || |||||| | ||| | |||||||| ||||| |||||| Sbjct 94684 ACAACATCCTTATGCATTCATTTCACATGTTAGGTATAGCTGGTGTATTCGGCGGTTCT- 94626 Query 183776 TGTTCAGTGCAATGCACGGTTCTCTGGTTACTTCCTCGCTGGTTC-GTGAAACCACTGAG 183834 ||||| | ||||| ||||| ||| || || | | | | || | ||||||||||| Sbjct 94625 --TTCAGCGTTATGCATGGTTCCTTGGCAACCTC-TAGTTTGATCAGGGAAACCACTGAA 94569 Query 183835 TCTGAGTCACAGAACTATGGTTACAAGTTCGGTCAAGAAGAAGAGACCTACAACATTGTC 183894 |||||| || | |||||||| || ||||||||||||||||| | || || || Sbjct 94568 AATGAGTCTGCTAATGAAGGTTACAAATTTGGTCAAGAAGAAGAGACATGTAATATCGTG 94509 Query 183895 GCTGCTCATGGATACTTTGGTCGTCTGATCTTCCAGTATGCTTCGTTTAACAATTC 183950 |||||||| || || |||||||| | ||||| || |||||| | || ||||| || Sbjct 94508 GCTGCTCACGGTTATTTTGGTCGATTAATCTTTCAATATGCTACTTTCAACAACTC 94453 >seq10113 Length=56568 Score = 203 bits (224), Expect = 4e-47 Identities = 464/692 (67%), Gaps = 5/692 (1%) Strand=Plus/Minus Query 185991 GACCGCTTTGTCTTTGTGGGCTGGTCTGGATTACTTCTTTTTCCCACTGCTTATATGGCA 186050 |||| ||||| ||||| | |||||||| || | || ||||| ||||||| | || Sbjct 48539 GACCATTTTGTTTTTGTATGATGGTCTGGCCTATTGCTCTTTCCTTGTGCTTATTTTGCT 48480 Query 186051 ATTGGTGGCTGGCTTACTGGCACAACGTTTGTTACGAGCTGGTATACCCACGGGTTGGCG 186110 | || || ||| |||| || || || ||||| || ||||||||||| || |||| Sbjct 48479 TTAGGGGGTTGGTTTACAGGRACTACTTTTGTAACTTCTTGGTATACCCATGGATTGGAT 48420 Query 186111 TCTTCTTACCTTGAGGG-TGCTAATTTTCTCACGGCAGCAGTGTCAACTCCTGCTGACGC 186169 ||| || | || || ||| ||||| | || || || || ||||||||| | Sbjct 48419 AGTTCCTATTTGGAAGGATGC-AATTTCTTAACAGCGGCGGTTATCACTCCTGCTAATAG 48361 Query 186170 TATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAGTCTCAAGGAGATATCATCCGCTG 186229 | | | || ||| | | ||||| ||||| | || || || ||| | | || || Sbjct 48360 TTTAGCACACTCTTTGTTACTACTATGGGGCCTGGAAGAACAGGGGGATTTTACTCGTTG 48301 Query 186230 GTTCCAACTTGGGGGACTCTGGAATTTTGTGGCGCTCCACGGAGCCTTTGCTCTCATAGG 186289 | ||| | || || || |||| |||||| || ||||| || || ||| || ||||| Sbjct 48300 ATGTCAATTAGGTGGTCTGTGGACTTTTGTCGCTCTCCATGGGGCTTTTATGCTAATAGG 48241 Query 186290 TTTCATGCTGCGACAGTTTGAA-ATCAGTCGTCTCGTAGGTATCCGTCCATACAATGCCA 186348 ||||||| | || || |||||| || |||| || | || || || ||||| | Sbjct 48240 TTTCATGTTACGTCAATTTGAACATGCTCAGTCT-GTTCAATTGCGGCCTTATAATGCAA 48182 Query 186349 TTGCTTTTTCTGGTCCTATCGCTG-TCTTTGTTAGTGTATTCCTCATCTACCCTCTTGGA 186407 || | || ||| |||| | | || | |||||| ||||||||| | || || | ||| Sbjct 48181 TTTCATTCTCTAGTCCAACCATTGTTTTTTGTTTTTGTATTCCTTGTTTATCCAATGGGA 48122 Query 186408 CAGTCCTCATGGTTCTTCGCTCCCTCCTTTGGAGTCGCAGCAATCTTTAGATTCCTGTTG 186467 || || | |||||| | | ||||| | | || || ||| |||| | | Sbjct 48121 CAATCTGGTTAGTTCTTTGTGCTGAGTTTTGGCATAGAAGTTATATTTCAATTCATCCTT 48062 Query 186468 TTCCTCCAAGGATTCCACAACTGGACGTTGAATCCATTCCACATGATGGGTGTAGCAGGT 186527 ||| |||||||||| | || |||||||| || ||||| || |||||||| || || || Sbjct 48061 TTCTTCCAAGGATTTCCTAATTGGACGTTAAACCCATTTCATATGATGGGGGTTGCCGGA 48002 Query 186528 ATCCTTGGTGGTGCTCTGCTGTCAGCAATCCATGGTGTTACTGTAGAAAATACTCTTTAT 186587 | | || | |||||||| | | |||||||| | ||| ||||||| ||||| | Sbjct 48001 GTATTAGGCGCAGCTCTGCTATGCTCTATCCATGGGGCTACCATAGAAAACACTCTATTC 47942 Query 186588 GAAGATGGCGAACAAGCAAACACATTCAAAGCATTCGATACGACGCAAGAAGAAGAAACC 186647 |||||| || ||||| || ||| | || | | | || |||| |||||||| Sbjct 47941 AAAGATGATGATGGTGCAAATACCTTCTATGCTTGTAACGCAACTCAAGCTGAAGAAACT 47882 Query 186648 TATTCGATGGTCACTGCGAACAGATTCTGGTC 186679 ||||| ||| ||||| | ||||| || ||||| Sbjct 47881 TATTCAATGATCACTACTAACAGCTTTTGGTC 47850 >seq12982 Length=32303 Score = 196 bits (216), Expect = 6e-45 Identities = 328/472 (69%), Gaps = 2/472 (0%) Strand=Plus/Plus Query 183195 CTTCTGCGAATGGATTACCAGCACTAACAACCGCCTCTATGTGGGTTGGTTTGGCACACT 183254 ||||||| | | ||| || ||||| | |||| || || | || |||||||| | Sbjct 472 CTTCTGCAACTAGATAACTAGCACCGAACACCGTCTTTACATCGGATGGTTTGGTGTTTT 531 Query 183255 GATGATTCCAACTCTGTTGGCAGCAACCATC-TGCTTCATCGTTGCCTTCGTCGCTGCTC 183313 |||||| || || | ||| | ||||| | | ||| || | ||||| ||||||||| Sbjct 532 GATGATCCCTACCTTATTGACCGCAACTTCCGTACTT-ATTATCACCTTCATCGCTGCTC 590 Query 183314 CTCCTGTGGACATCGACGGCATCCGCGAACCCGTTGCTGGGTCGCTCATGTATGGAAACA 183373 |||| || || || || || || || || || ||| |||| || | || |||||||||| Sbjct 591 CTCCAGTAGATATTGATGGTATTCGTGAGCCTGTTTCTGGTTCTTTAATTTATGGAAACA 650 Query 183374 ACATCATCTCTGGTGCAGTTGTTCCTTCTTCCAACGCAATTGGACTTCACTTCTATCCCA 183433 || ||||||||||| || ||||| ||| | || ||| | || || || || | Sbjct 651 GTATTATCTCTGGTGCTATTATTCCTACTTATGTGACGATCGGATTGCATTTTTACCCAA 710 Query 183434 TCTGGGAAGCAGCATCACTCGATGAGTGGCTGTATAACGGTGGTCCTTACCAACTCGTAG 183493 | ||| |||| ||||| | ||||| ||| | || || || |||||||| | || | | Sbjct 711 TTTGGAAAGCTGCATCCGTTGATGAATGGTTATACAATGGCGGTCCTTATGACCTAATTG 770 Query 183494 TCTTCCACTTCCTCATTGGCGTCTTCTGCTACATGGGTCGTGAGTGGGAATTGTCTTACC 183553 | | || ||| | |||| || || || |||| |||||| |||||| | || || Sbjct 771 TTCTACATTTCTTACTTGGTGTAGCTTGTTATATGGATCGTGACTGGGAACTTAGTTTCC 830 Query 183554 GTCTCGGTATGCGTCCTTGGATCTGTGTTGCTTATAGCGCACCTGTTGCTGCTGCAACCG 183613 ||| |||||||| | |||||| |||||| ||| || |||||||| | ||| || | Sbjct 831 ATCTGGGTATGCGCCTTTGGATTGTTGTTGCATATTCAGCTCCTGTTGCAGTTGCTACTG 890 Query 183614 CTGTCTTCCTGGTCTATCCTTTCGGTCAAGGTTCTTTTAGTGATGGTATGCC 183665 || | ||| || | || ||| | ||||||| |||| |||||||||||| Sbjct 891 CTATTTTCTTGATTTACCCTATTGGTCAAGAAAGTTTTTCTGATGGTATGCC 942 >seq8160 Length=957 Score = 104 bits (114), Expect = 3e-17 Identities = 90/112 (80%), Gaps = 0/112 (0%) Strand=Plus/Plus Query 183853 GGTTACAAGTTCGGTCAAGAAGAAGAGACCTACAACATTGTCGCTGCTCATGGATACTTT 183912 |||||||| || | | |||||||||||||||| || ||||| |||||||||| || ||| Sbjct 347 GGTTACAAATTTGATTAAGAAGAAGAGACCTATAATATTGTGGCTGCTCATGATTATTTT 406 Query 183913 GGTCGTCTGATCTTCCAGTATGCTTCGTTTAACAATTCTCGTTCTCTTCACT 183964 ||||| | |||||||| ||| || || ||||| ||||||||| | |||| Sbjct 407 GGTCGATTAATCTTCCAATATCCTAGTTTCAACAACTCTCGTTCTTTACACT 458 >seq12273 Length=37008 Score = 102 bits (112), Expect = 1e-16 Identities = 79/94 (84%), Gaps = 0/94 (0%) Strand=Plus/Minus Query 183953 GTTCTCTTCACTTCTTCCTTGCTGCTTGGCCAGTGGTCGGCATCTGGTTTACTGCTCTTG 184012 ||||| | ||||||||| | ||||||||||| || || || |||||||| |||||| | | Sbjct 29536 GTTCTTTACACTTCTTCTTGGCTGCTTGGCCTGTAGTAGGGATCTGGTTCACTGCTTTAG 29477 Query 184013 GTGTTAGCACTATGGCATTTAACCTGAATGGTTT 184046 || |||| ||||||||||| ||||| |||||||| Sbjct 29476 GTATTAGTACTATGGCATTCAACCTAAATGGTTT 29443 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 621934819756320