Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dichanthelium_20oligosanthes_20[genbank_20GCA_5F001633215.2_202016- 09-29] 17,436 sequences; 589,166,415 total letters Query= NC_031935.1 Length=186386 Score E Sequences producing significant alignments: (Bits) Value seq16913 304 2e-77 seq10113 203 4e-47 seq12982 185 1e-41 seq666 140 4e-28 seq12273 95.1 1e-14 seq8160 95.1 1e-14 >seq16913 Length=117496 Score = 304 bits (336), Expect = 2e-77 Identities = 542/786 (69%), Gaps = 30/786 (4%) Strand=Plus/Minus Query 177589 TGGGAACAATTCTGTAACTGGGTAACCTCCACCAACAATCGTCTGTATGTCGGTTGGTTC 177648 |||| || ||||| |||||| |||| |||| | || ||||| || |||| |||||| Sbjct 95230 TGGGGTCACTTCTGCAACTGGATAACTAGCACCGAAAACCGTCTTTACATCGGATGGTTC 95171 Query 177649 GGTGTCCTGATGATCCCTACGCTGCTCGCTGCTGCTATCTGTTTCATCGTCGCTTTCGTC 177708 ||||| ||||||||| ||| | | | || || | || || |||| ||| || Sbjct 95170 GGTGTTTTGATGATCCGTACCTTATTAACCGCAACTTCCATATTTATTATCGCCTTCATC 95111 Query 177709 GCTGCTCCTCCTGTGGACATCGACGGCATCCGTGAACCCGTCGCTGGTTCCCTGATGTAT 177768 ||||||||||| || || || || || || ||||| || || || |||| | | ||| Sbjct 95110 GCTGCTCCTCCGGTAGATATTGATGGTATTCGTGAGCCTGTTTCTAGTTCTTTACTTTAT 95051 Query 177769 GGCAACAACATCATTTCTGGTGCTGTTGTTCCTTC------------------TTCTAAC 177810 | ||||| || || ||||||||| || ||||| | |||| Sbjct 95050 AGAAACAATATTATATCTGGTGCTATTATTCCTGCAGAAACTATTATTCCTACTTCTGTG 94991 Query 177811 GCTATTGGTCTCCACTTCTATCCCATCTGGGAAGCAGCTTCTCTCGATGAGTGGCTCTAC 177870 || || || | || || || || || ||| || | || ||| | ||||| ||| | || Sbjct 94990 GCAATCGGATTGCATTTTTACCCAATTTGGAAAACTGCATCTGTTGATGAATGGTTATAA 94931 Query 177871 AATGGTGGTCCTTTCCAACTCGTTATCTTCCACTTCCTGATCGGTATCTATGCATACATG 177930 ||| ||||||||| | || || | | | || | | ||| | | || ||| Sbjct 94930 AATTGTGGTCCTTCTGAGCTAATTGTTCTATATTTTTTACTTGGTGTAGCTTGTTATATG 94871 Query 177931 GGTCGTGAGTGGG-AACTTTCTTACCGCCTAGGTATGCGTCCCTGGATCTGTGTAGCATA 177989 ||||||||||||| ||||| || ||| || |||| ||| || ||||| | | ||||| Sbjct 94870 GGTCGTGAGTGGGGAACTTAGTTTCCGTCTGGGTACGCGCCCTTGGATTGCTATTGCATA 94811 Query 177990 CTCTGCTCCAGTCGCCGCAGCATCTGCTGTATTCCTTGTTTATCCTTTCGGTCAAGGTTC 178049 || ||||| | || || || |||||| ||| | ||||| || | |||||||| Sbjct 94810 TTCAGCTCCTTT-GCAGCTGCTAGTGCTGTTTTCTTGGTTTACTCTATTGGTCAAGGGAG 94752 Query 178050 TTTCTCTGACGCTATGCCCCTGGGTATCAGTGGCACCTTCAACTACATGCTTGTCTTCCA 178109 |||||| || | | |||| | || || ||| | ||||||| || |||| ||||| Sbjct 94751 TTTCTCCGATGGTGTGCCTTTAGGAATATCTGGTAT-TTCAACTTTATAATTGTATTCCA 94693 Query 178110 AGCAGAGCACAACATCCTGATGCACCCCTTCCACATGTTGGGCGTCGCTGGTGTCTTTGG 178169 | ||||||||||||||| ||||| | || |||||||| || | |||||||| || || Sbjct 94692 GGTAGAGCACAACATCCTTATGCATTCATTTCACATGTTAGGTATAGCTGGTGTATTCGG 94633 Query 178170 TGGTTCTCTGTTCAGTGCGATGCACGGTTCTCTGGTTACTTCCTCGCTGGTTC-GTGAAA 178228 |||||| ||||| | ||||| ||||| ||| || || | | | | || | |||| Sbjct 94632 CGGTTCT---TTCAGCGTTATGCATGGTTCCTTGGCAACCTC-TAGTTTGATCAGGGAAA 94577 Query 178229 CCACCGAGAACGAAAGTCAG--AACTATGGTTACAAGTTCGGTCAAGAAGAAGAGACCTA 178286 |||| || || || ||| | || | |||||||| || ||||||||||||||||| | Sbjct 94576 CCACTGAAAATGA--GTCTGCTAATGAAGGTTACAAATTTGGTCAAGAAGAAGAGACATG 94519 Query 178287 CAACATCGTTGCTGCTCATGGTTACTTCGGTCGCCTGATCTTCCAATACGCATCCTTCAA 178346 || ||||| |||||||| ||||| || ||||| | ||||| ||||| || | ||||| Sbjct 94518 TAATATCGTGGCTGCTCACGGTTATTTTGGTCGATTAATCTTTCAATATGCTACTTTCAA 94459 Query 178347 CAACTC 178352 |||||| Sbjct 94458 CAACTC 94453 >seq10113 Length=56568 Score = 203 bits (224), Expect = 4e-47 Identities = 461/687 (67%), Gaps = 5/687 (1%) Strand=Plus/Minus Query 178875 TTCGTTTTTGTTGGTTGGTCAGGTCTTCTTCTGTTCCCTACTGCTTACATGGCACTGGGC 178934 || |||||||| | ||||| || || | || || ||| |||||| | || | || Sbjct 48533 TTTGTTTTTGTATGATGGTCTGGCCTATTGCTCTTTCCTTGTGCTTATTTTGCTTTAGGG 48474 Query 178935 GGTTGGCTCACGGGCACAACATTCGTCACCTCGTGGTATACTCACGGGATTGCTTCTTCG 178994 |||||| | || || || || || || || || |||||||| || || | | | ||| Sbjct 48473 GGTTGGTTTACAGGRACTACTTTTGTAACTTCTTGGTATACCCATGGATTGGATAGTTCC 48414 Query 178995 TATCTTGAGGGATGTAATTTCCTTACTGCTGCTGT-ATCAACTCCTGCTGACGCTCTCGG 179053 ||| | || ||||| |||||| | || || || || |||| |||||||| | | | | Sbjct 48413 TATTTGGAAGGATGCAATTTCTTAACAGCGGCGGTTATCA-CTCCTGCTAATAGTTTAGC 48355 Query 179054 ACATTCCCTACTTCTTCTATGGGGTCCAGAAGCTCAGGGAGATTTCGTCCGCTGGCTCCA 179113 ||| || | | || |||||||| | |||| ||||| ||||| || || || Sbjct 48354 ACACTCTTTGTTACTACTATGGGGCCTGGAAGAACAGGGGGATTTTACTCGTTGATGTCA 48295 Query 179114 ACTTGGGGGACTATGGCCTTTTGTGGCGCTCCACGGTGCCTTCGCTCTCATAGGTTTCAT 179173 | | || || || ||| ||||||| || ||||| || || || || ||||||||||| Sbjct 48294 ATTAGGTGGTCTGTGGACTTTTGTCGCTCTCCATGGGGCTTTTATGCTAATAGGTTTCAT 48235 Query 179174 GCTTCGGCAGTTTGAAATCGCAC-GTCTAGTCGGTATTCGTCCTTACAATGCAATCGCGT 179232 | | || || |||||| || | |||| || | | || ||||| |||||||| | | Sbjct 48234 GTTACGTCAATTTGAACATGCTCAGTCTGTTCAAT-TGCGGCCTTATAATGCAATTTCAT 48176 Query 179233 TTTCTGGTCCAATTGCTG-TCTTTGTGTCTGTTTTTCTCATGTATCCTCTCGGACAGTCC 179291 | ||| |||||| || | ||||| | ||| || || | ||||| | ||||| || Sbjct 48175 TCTCTAGTCCAACCATTGTTTTTTGTTTTTGTATTCCTTGTTTATCCAATGGGACAATCT 48116 Query 179292 TCGTGGTTCTTTGCGCCGTCGTTTGGAGTTGCAGCGATTTTCCGCTTCCTACTCTTCCTA 179351 | |||||||| || | ||||| | | || || || | ||| | || ||| | Sbjct 48115 GGTTAGTTCTTTGTGCTGAGTTTTGGCATAGAAGTTATATTTCAATTCATCCTTTTCTTC 48056 Query 179352 CAGGGCTTCCACAACTGGACGCTCAACCCGTTCCACATGATGGGTGTAGCAGGTATCCTG 179411 || || || | || |||||| | ||||| || || |||||||| || || || | | Sbjct 48055 CAAGGATTTCCTAATTGGACGTTAAACCCATTTCATATGATGGGGGTTGCCGGAGTATTA 47996 Query 179412 GGCGGAGCATTGCTTTGTGCCATTCATGGTGCTACAGTAGAGAACACACTCTTTGAAGAC 179471 |||| ||| |||| || | || ||||| ||||| |||| ||||| || || |||| Sbjct 47995 GGCGCAGCTCTGCTATGCTCTATCCATGGGGCTACCATAGAAAACACTCTATTCAAAGAT 47936 Query 179472 AGTGACCAATCAAATACATTCAAGGCATTCGAGCCTACACAAGAAGAGGAGACCTATTCG 179531 ||| ||||||| ||| | || | | | || |||| || || || ||||| Sbjct 47935 GATGATGGTGCAAATACCTTCTATGCTTGTAACGCAACTCAAGCTGAAGAAACTTATTCA 47876 Query 179532 ATGGTTACTGCCAACCGTTTCTGGTCT 179558 ||| | ||| | ||| | || |||||| Sbjct 47875 ATGATCACTACTAACAGCTTTTGGTCT 47849 Score = 129 bits (142), Expect = 7e-25 Identities = 208/297 (70%), Gaps = 3/297 (1%) Strand=Plus/Minus Query 179553 TGGTCTCAGATCTTTGGTATCGCCTTCAGCAATAAGCGTTGGCTACATTTCTTTATGTTG 179612 ||||| || || |||||| | | || |||||| |||||| |||||||||||||| | Sbjct 1009 TGGTCCCAAATATTTGGTGTTTCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGCTA 950 Query 179613 TTTGTTCCTGTCATGGGTCTTTGGACCTCTAGCATTGGTATTATTGGTCTTGCACTTAAC 179672 |||| | ||| || || | | || || ||||| | ||| || || || ||| Sbjct 949 CTTGTACTTGTAATCAGTTTATAGATGACTGCTATTGG-CTAGTTGCCCTGGCTCTGAAC 891 Query 179673 CTTAGAGCTTATGACTTTGTTTCACAAGAGATCAGAGCGGCAGAGGATCCTGAGTTCGAG 179732 || | || ||||| || ||| || | ||| | || ||||| |||||||| || ||| Sbjct 890 CTATGTGCCTATGA--TTTCTTCCCAGAAAATCCGTGCAGCAGAAGATCCTGAATTTGAG 833 Query 179733 ACGTTCTATACCAAGAACATCCTATTGAATGAAGGTCTACGTGCTTGGATGGCACCAGTC 179792 || ||||| ||||| | || || || ||||| ||| | | ||| ||||||||| | Sbjct 832 ACTTTCTACACCAAATATATTCTTTTAAATGAGGGTATTCATGCGTGGATGGCAGCTCAG 773 Query 179793 GATCAACCACATGAAAACTTTGTATTTCCTGAAGAAGTATTGCCAAGAGGCAACGCT 179849 ||||| || |||||||| || |||| ||||| || || | ||| | || | |||| Sbjct 772 GATCAGCCTCATGAAAATCTTATATTCCCTGAGGAGGTTCTACCATGTGGAATCGCT 716 >seq12982 Length=32303 Score = 185 bits (204), Expect = 1e-41 Identities = 325/471 (69%), Gaps = 2/471 (0%) Strand=Plus/Plus Query 177598 TTCTGTAACTGGGTAACCTCCACCAACAATCGTCTGTATGTCGGTTGGTTCGGTGTCCTG 177657 ||||| |||| | |||| |||| | | ||||| || |||| ||||| ||||| || Sbjct 473 TTCTGCAACTAGATAACTAGCACCGAACACCGTCTTTACATCGGATGGTTTGGTGTTTTG 532 Query 177658 ATGATCCCTACGCTGCTCGCTGCTGCTATCTGTT-TCATCGTCGCTTTCGTCGCTGCTCC 177716 ||||||||||| | | | || || || || | || || | ||| |||||||||| Sbjct 533 ATGATCCCTACCTTATTGACCGCAACT-TCCGTACTTATTATCACCTTCATCGCTGCTCC 591 Query 177717 TCCTGTGGACATCGACGGCATCCGTGAACCCGTCGCTGGTTCCCTGATGTATGGCAACAA 177776 ||| || || || || || || ||||| || || ||||||| | || ||||| |||| Sbjct 592 TCCAGTAGATATTGATGGTATTCGTGAGCCTGTTTCTGGTTCTTTAATTTATGGAAACAG 651 Query 177777 CATCATTTCTGGTGCTGTTGTTCCTTCTTCTAACGCTATTGGTCTCCACTTCTATCCCAT 177836 || || ||||||||| || ||||| ||| | | || || | || || || || || Sbjct 652 TATTATCTCTGGTGCTATTATTCCTACTTATGTGACGATCGGATTGCATTTTTACCCAAT 711 Query 177837 CTGGGAAGCAGCTTCTCTCGATGAGTGGCTCTACAATGGTGGTCCTTTCCAACTCGTTAT 177896 ||| |||| || || | ||||| ||| | |||||||| ||||||| | || || | Sbjct 712 TTGGAAAGCTGCATCCGTTGATGAATGGTTATACAATGGCGGTCCTTATGACCTAATTGT 771 Query 177897 CTTCCACTTCCTGATCGGTATCTATGCATACATGGGTCGTGAGTGGGAACTTTCTTACCG 177956 | || ||| | | ||| | | || |||| |||||| ||||||||| || || Sbjct 772 TCTACATTTCTTACTTGGTGTAGCTTGTTATATGGATCGTGACTGGGAACTTAGTTTCCA 831 Query 177957 CCTAGGTATGCGTCCCTGGATCTGTGTAGCATACTCTGCTCCAGTCGCCGCAGCATCTGC 178016 || |||||||| | ||||| ||| ||||| || ||||| || || | || |||| Sbjct 832 TCTGGGTATGCGCCTTTGGATTGTTGTTGCATATTCAGCTCCTGTTGCAGTTGCTACTGC 891 Query 178017 TGTATTCCTTGTTTATCCTTTCGGTCAAGGTTCTTTCTCTGACGCTATGCC 178067 | | ||| | |||| ||| | ||||||| ||| ||||| | |||||| Sbjct 892 TATTTTCTTGATTTACCCTATTGGTCAAGAAAGTTTTTCTGATGGTATGCC 942 >seq666 Length=229199 Score = 140 bits (154), Expect = 4e-28 Identities = 178/245 (73%), Gaps = 0/245 (0%) Strand=Plus/Minus Query 179508 ACACAAGAAGAGGAGACCTATTCGATGGTTACTGCCAACCGTTTCTGGTCTCAGATCTTT 179567 || |||| || || || ||||| ||||||||||| | || || |||||||| |||||| Sbjct 152525 ACTCAAGCTGAAGAAACTTATTCAATGGTTACTGCTTATCGCTTTTGGTCTCAAATCTTT 152466 Query 179568 GGTATCGCCTTCAGCAATAAGCGTTGGCTACATTTCTTTATGTTGTTTGTTCCTGTCATG 179627 ||| | || || |||||| | ||| |||||||||||||||| ||||| || |||| Sbjct 152465 GGTGTTGCTTTTCTCAATAAAGGCTGGTTACATTTCTTTATGTTATTTGTACCCGTCACC 152406 Query 179628 GGTCTTTGGACCTCTAGCATTGGTATTATTGGTCTTGCACTTAACCTTAGAGCTTATGAC 179687 ||| | |||| | ||||| | |||| || || | ||||| | |||| |||| Sbjct 152405 GGTTTATGGATGAGTGCTATTGGCGTAGTTGGCCTGGCTTTGAACCTACGTGCTTGTGAC 152346 Query 179688 TTTGTTTCACAAGAGATCAGAGCGGCAGAGGATCCTGAGTTCGAGACGTTCTATACCAAG 179747 || |||| || || ||| || || || |||||||| || ||||| |||||| |||| Sbjct 152345 TTCATTTCCCAGGAAATCCATGCAGCGGAAGATCCTGAATTTGAGACTTTCTATGCCAAA 152286 Query 179748 AACAT 179752 || || Sbjct 152285 AATAT 152281 >seq12273 Length=37008 Score = 95.1 bits (104), Expect = 1e-14 Identities = 78/95 (82%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 178355 GTTCGCTGCACTTCTTCCTCGCAGCATGGCCTGTTGTCGGTATCTGGTTCACTGCTCTTG 178414 |||| | ||||||||| | || || |||||||| || || ||||||||||||||| | | Sbjct 29536 GTTCTTTACACTTCTTCTTGGCTGCTTGGCCTGTAGTAGGGATCTGGTTCACTGCTTTAG 29477 Query 178415 GTGTTAGCACCATGGCATTCAACCTCAACGGTTTC 178449 || |||| || |||||||||||||| || |||||| Sbjct 29476 GTATTAGTACTATGGCATTCAACCTAAATGGTTTC 29442 >seq8160 Length=957 Score = 95.1 bits (104), Expect = 1e-14 Identities = 88/112 (79%), Gaps = 0/112 (0%) Strand=Plus/Plus Query 178255 GGTTACAAGTTCGGTCAAGAAGAAGAGACCTACAACATCGTTGCTGCTCATGGTTACTTC 178314 |||||||| || | | |||||||||||||||| || || || |||||||||| ||| || Sbjct 347 GGTTACAAATTTGATTAAGAAGAAGAGACCTATAATATTGTGGCTGCTCATGATTATTTT 406 Query 178315 GGTCGCCTGATCTTCCAATACGCATCCTTCAACAACTCCCGTTCGCTGCACT 178366 ||||| | ||||||||||| | ||||||||||| ||||| | |||| Sbjct 407 GGTCGATTAATCTTCCAATATCCTAGTTTCAACAACTCTCGTTCTTTACACT 458 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596177234845760