Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dichanthelium_20oligosanthes_20[genbank_20GCA_5F001633215.2_202016- 09-29] 17,436 sequences; 589,166,415 total letters Query= NC_031944.1 Length=185102 Score E Sequences producing significant alignments: (Bits) Value seq16913 316 2e-81 seq10113 219 5e-52 seq12982 196 6e-45 seq666 131 2e-25 seq12572 100 3e-16 seq8160 89.7 6e-13 >seq16913 Length=117496 Score = 316 bits (350), Expect = 2e-81 Identities = 541/783 (69%), Gaps = 24/783 (3%) Strand=Plus/Minus Query 169343 TGGGAACAATTCTGTAACTGGGTAACCTCCACTGACAACCGTCTGTATGTCGGTTGGTTC 169402 |||| || ||||| |||||| |||| ||| || |||||||| || |||| |||||| Sbjct 95230 TGGGGTCACTTCTGCAACTGGATAACTAGCACCGAAAACCGTCTTTACATCGGATGGTTC 95171 Query 169403 GGCGTCCTGATGATCCCCTGCCTGCTGGCAGCAACCACTTGTTTCATCATCGCCTTCATC 169462 || || ||||||||| | | | | ||||| | || || |||||||||||| Sbjct 95170 GGTGTTTTGATGATCCGTACCTTATTAACCGCAACTTCCATATTTATTATCGCCTTCATC 95111 Query 169463 GGTGCTCCCCCTGTGGACATCGACGGCATCCGCGAACCCGTTGCTGGTTCTCTGATGTAT 169522 | |||||| || || || || || || || || || || ||| || ||||| | | ||| Sbjct 95110 GCTGCTCCTCCGGTAGATATTGATGGTATTCGTGAGCCTGTTTCTAGTTCTTTACTTTAT 95051 Query 169523 GGTAACAACATCATCTCTGGTGCTGTTGTGCCCTC-----------TTCCAAC------- 169564 | ||||| || || ||||||||| || | || | |||| || Sbjct 95050 AGAAACAATATTATATCTGGTGCTATTATTCCTGCAGAAACTATTATTCCTACTTCTGTG 94991 Query 169565 GCAATCGGTCTTCACTTCTATCCCATCTGGGAAGCAGCAAGTCTCGATGAATGGTTGTAC 169624 |||||||| | || || || || || ||| || | ||| | | ||||||||||| || Sbjct 94990 GCAATCGGATTGCATTTTTACCCAATTTGGAAAACTGCATCTGTTGATGAATGGTTATAA 94931 Query 169625 AACGGTGGTCCTTTCCAACTGGTTGTCTTCCACTTCCTCATCGGCATCTATGCTTACATG 169684 || ||||||||| | || |||| | | || | | || | | ||| ||| Sbjct 94930 AATTGTGGTCCTTCTGAGCTAATTGTTCTATATTTTTTACTTGGTGTAGCTTGTTATATG 94871 Query 169685 GGTCGTGAGTGGGAATTGTCCTATC-GTCTGGGTATGCGCCCTTGGATCTGTGTTGCTTA 169743 ||||||||||||| | | | || ||||||||| |||||||||||| | |||| || Sbjct 94870 GGTCGTGAGTGGGGAACTTAGTTTCCGTCTGGGTACGCGCCCTTGGATTGCTATTGCATA 94811 Query 169744 CTCTGCTCCCGTTGCGGCAGCCTCCGCTGTTTTCCTGGTCTACCCGTTTGGGCAAGGGTC 169803 || ||||| |||| || || ||||||||| |||| ||| | |||| |||||| Sbjct 94810 TTCAGCTCCT-TTGCAGCTGCTAGTGCTGTTTTCTTGGTTTACTCTATTGGTCAAGGGAG 94752 Query 169804 GTTCTCTGACGCTATGCCTCTGGGTATCTCGGGAACCTTTAACTACATGCTGGTCTTCCA 169863 ||||| || | | ||||| | || || || || | || |||| || | || ||||| Sbjct 94751 TTTCTCCGATGGTGTGCCTTTAGGAATATCTGGTAT-TTCAACTTTATAATTGTATTCCA 94693 Query 169864 AGCTGAGCACAACATCCTCATGCACCCCTTCCACATGCTTGGTGTTGCGGGAGTGTTTGG 169923 | |||||||||||||| ||||| | || |||||| | ||| | || || || || || Sbjct 94692 GGTAGAGCACAACATCCTTATGCATTCATTTCACATGTTAGGTATAGCTGGTGTATTCGG 94633 Query 169924 TGGGTCTCTGTTTAGCGCGATGCACGGTAGCCTCGTCACTTCGAGTCTTGTCCGTGAAAC 169983 || ||| || |||| ||||| ||| | | | || || ||| | || | ||||| Sbjct 94632 CGGTTCT---TTCAGCGTTATGCATGGTTCCTTGGCAACCTCTAGTTTGATCAGGGAAAC 94576 Query 169984 CACCGAGAACGAGTCCCAGAACTATGGTTACAAGTTCGGTCAAGAAGAAGAGACCTACAA 170043 ||| || || ||||| || | |||||||| || ||||||||||||||||| | || Sbjct 94575 CACTGAAAATGAGTCTGCTAATGAAGGTTACAAATTTGGTCAAGAAGAAGAGACATGTAA 94516 Query 170044 CATCGTTGCCGCTCACGGTTACTTCGGTCGCCTGATCTTCCAATACGCTTCCTTCAACAA 170103 ||||| || ||||||||||| || ||||| | ||||| ||||| ||| | |||||||| Sbjct 94515 TATCGTGGCTGCTCACGGTTATTTTGGTCGATTAATCTTTCAATATGCTACTTTCAACAA 94456 Query 170104 CTC 170106 ||| Sbjct 94455 CTC 94453 >seq10113 Length=56568 Score = 219 bits (242), Expect = 5e-52 Identities = 466/690 (68%), Gaps = 13/690 (2%) Strand=Plus/Minus Query 170631 TTTGTATTTGTGGGCTGGTCTGGACTTCTTCTTTTTCCCACTGCTTATCTTGCAATTGGC 170690 ||||| ||||| | |||||||| || | || ||||| ||||||| |||| | || Sbjct 48533 TTTGTTTTTGTATGATGGTCTGGCCTATTGCTCTTTCCTTGTGCTTATTTTGCTTTAGGG 48474 Query 170691 GGCTGGCTTACGGGCACGACATTTGTTACAAGTTGGTACACCCACGGACTTGCAAGTTCG 170750 || ||| |||| || || || ||||| || |||||| ||||| ||| | | ||||| Sbjct 48473 GGTTGGTTTACAGGRACTACTTTTGTAACTTCTTGGTATACCCATGGATTGGATAGTTCC 48414 Query 170751 TACCTTGAAGG-TGCTAATTTCCTTACAGCGGCTGTGTCAACGCCTGCTGATGCTATGGG 170809 || | ||||| ||| |||||| | |||||||| || || |||||| || | | | Sbjct 48413 TATTTGGAAGGATGC-AATTTCTTAACAGCGGCGGTTATCACTCCTGCTAATAGTTTAGC 48355 Query 170810 TCATTCTCTTCTTCTACTTTGGGGTCCTGAGTCTCAGGGGGATTTCCAACGCTGGTTACA 170869 || ||| | | ||||| ||||| | || ||||||||||| || || | || Sbjct 48354 ACACTCTTTGTTACTACTATGGGGCCTGGAAGAACAGGGGGATTTTACTCGTTGATGTCA 48295 Query 170870 ACTTGGGGGACTCTGGAATTTTGTGGCGCTCCACGGAGCCTTTGCTCTCATAGGTTTCAT 170929 | | || || || |||| |||||| || ||||| || || ||| || ||||||||||| Sbjct 48294 ATTAGGTGGTCTGTGGACTTTTGTCGCTCTCCATGGGGCTTTTATGCTAATAGGTTTCAT 48235 Query 170930 GCTTCGGCAGTTTGAA----ATCAGTCGTCTCGTAGGGATT-AGACCGTACAATGCAATC 170984 | | || || |||||| |||||| || ||| | || || |||||||| Sbjct 48234 GTTACGTCAATTTGAACATGCTCAGTCTGTTC-----AATTGCGGCCTTATAATGCAATT 48180 Query 170985 GCTTTCTCTGGTCCTATCGCTG-TGTTTGTCAGCGTGTTCCTCATCTATCCTCTTGGGCA 171043 | |||||| |||| | | || | ||||| || ||||| | ||||| | || || Sbjct 48179 TCATTCTCTAGTCCAACCATTGTTTTTTGTTTTTGTATTCCTTGTTTATCCAATGGGACA 48120 Query 171044 GTCAAGTTGGTTCTTCGCACCTTCCTTTGGAGTTGCAGCAATCTTCCGCTTCCTGCTCTT 171103 || ||| |||||| | | ||||| | | || || || | ||| | || || Sbjct 48119 ATCTGGTTAGTTCTTTGTGCTGAGTTTTGGCATAGAAGTTATATTTCAATTCATCCTTTT 48060 Query 171104 CCTGCAAGGTTTCCACAACTGGACACTGAATCCATTTCATATGATGGGTGTTGCAGGTAT 171163 | | ||||| || | || ||||| | || ||||||||||||||||| ||||| || | Sbjct 48059 CTTCCAAGGATTTCCTAATTGGACGTTAAACCCATTTCATATGATGGGGGTTGCCGGAGT 48000 Query 171164 CCTCGGCGGTGCATTGCTTTCTGCAATTCATGGTGTTACAGTAGAGAATACTTTGTATGA 171223 | |||| || |||| | | || ||||| | ||| |||| || ||| | | | Sbjct 47999 ATTAGGCGCAGCTCTGCTATGCTCTATCCATGGGGCTACCATAGAAAACACTCTATTCAA 47940 Query 171224 AGATGGTGATCAAGCAAACACCTTTAAGGCATTTGACACGACTCAGGAGGAAGAGACATA 171283 ||||| |||| ||||| ||||| | || | | || | ||||| | ||||| || || Sbjct 47939 AGATGATGATGGTGCAAATACCTTCTATGCTTGTAACGCAACTCAAGCTGAAGAAACTTA 47880 Query 171284 TTCTATGGTCACTGCTAATCGTTTCTGGTC 171313 ||| ||| ||||| |||| | || ||||| Sbjct 47879 TTCAATGATCACTACTAACAGCTTTTGGTC 47850 Score = 143 bits (158), Expect = 3e-29 Identities = 207/290 (71%), Gaps = 3/290 (1%) Strand=Plus/Minus Query 171309 TGGTCGCAGATTTTTGGTATCGCGTTCAGCAATAAGCGTTGGTTGCATTTCTTTATGCTG 171368 ||||| || || |||||| | | || |||||| |||||||| |||||||||||||| Sbjct 1009 TGGTCCCAAATATTTGGTGTTTCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGCTA 950 Query 171369 TTTGTTCCTGTCATGGGTCTTTGGGTCAGTAGTCTGGGGATTATTGGTCTTGCTCTTAAT 171428 |||| | ||| || || | | | | | | | | || | ||| || ||||| || Sbjct 949 CTTGTACTTGTAATCAGTTTATAGATGACTGCTATTGGC-TAGTTGCCCTGGCTCTGAAC 891 Query 171429 CTTAGGGCTTATGATTTCGTAAGTCAGGAGGTCAGAGCAGCAGAAGATCCAGAGTTCGAG 171488 || | || ||||||||| | ||| | || | |||||||||||||| || || ||| Sbjct 890 CTATGTGCCTATGATTTCTTCC--CAGAAAATCCGTGCAGCAGAAGATCCTGAATTTGAG 833 Query 171489 ACGTTCTATACCAAGAACATCCTATTGAATGAAGGTCTTCGTGCATGGATGGCACCAGTA 171548 || ||||| ||||| | || || || ||||| ||| ||| ||| ||||||||| | Sbjct 832 ACTTTCTACACCAAATATATTCTTTTAAATGAGGGTATTCATGCGTGGATGGCAGCTCAG 773 Query 171549 GACCAACCACATGAAAACTTTGTGTTCCCAGAGGAAGTTCTACCTCGTGG 171598 || || || |||||||| || | ||||| ||||| |||||||| |||| Sbjct 772 GATCAGCCTCATGAAAATCTTATATTCCCTGAGGAGGTTCTACCATGTGG 723 >seq12982 Length=32303 Score = 196 bits (216), Expect = 6e-45 Identities = 338/491 (69%), Gaps = 0/491 (0%) Strand=Plus/Plus Query 169352 TTCTGTAACTGGGTAACCTCCACTGACAACCGTCTGTATGTCGGTTGGTTCGGCGTCCTG 169411 ||||| |||| | |||| ||| || ||||||| || |||| ||||| || || || Sbjct 473 TTCTGCAACTAGATAACTAGCACCGAACACCGTCTTTACATCGGATGGTTTGGTGTTTTG 532 Query 169412 ATGATCCCCTGCCTGCTGGCAGCAACCACTTGTTTCATCATCGCCTTCATCGGTGCTCCC 169471 |||||||| | | || | ||||| | | || ||| ||||||||| |||||| Sbjct 533 ATGATCCCTACCTTATTGACCGCAACTTCCGTACTTATTATCACCTTCATCGCTGCTCCT 592 Query 169472 CCTGTGGACATCGACGGCATCCGCGAACCCGTTGCTGGTTCTCTGATGTATGGTAACAAC 169531 || || || || || || || || || || ||| |||||||| | || ||||| |||| Sbjct 593 CCAGTAGATATTGATGGTATTCGTGAGCCTGTTTCTGGTTCTTTAATTTATGGAAACAGT 652 Query 169532 ATCATCTCTGGTGCTGTTGTGCCCTCTTCCAACGCAATCGGTCTTCACTTCTATCCCATC 169591 || |||||||||||| || | || ||| | ||||| | || || || || || Sbjct 653 ATTATCTCTGGTGCTATTATTCCTACTTATGTGACGATCGGATTGCATTTTTACCCAATT 712 Query 169592 TGGGAAGCAGCAAGTCTCGATGAATGGTTGTACAACGGTGGTCCTTTCCAACTGGTTGTC 169651 ||| |||| ||| | ||||||||||| ||||| || ||||||| | || |||| Sbjct 713 TGGAAAGCTGCATCCGTTGATGAATGGTTATACAATGGCGGTCCTTATGACCTAATTGTT 772 Query 169652 TTCCACTTCCTCATCGGCATCTATGCTTACATGGGTCGTGAGTGGGAATTGTCCTATCGT 169711 | || ||| | | || | | ||| |||| |||||| |||||| | | | | Sbjct 773 CTACATTTCTTACTTGGTGTAGCTTGTTATATGGATCGTGACTGGGAACTTAGTTTCCAT 832 Query 169712 CTGGGTATGCGCCCTTGGATCTGTGTTGCTTACTCTGCTCCCGTTGCGGCAGCCTCCGCT 169771 ||||||||||||| |||||| |||||| || || ||||| ||||| | || | ||| Sbjct 833 CTGGGTATGCGCCTTTGGATTGTTGTTGCATATTCAGCTCCTGTTGCAGTTGCTACTGCT 892 Query 169772 GTTTTCCTGGTCTACCCGTTTGGGCAAGGGTCGTTCTCTGACGCTATGCCTCTGGGTATC 169831 ||||| || | ||||| |||| |||| || ||||| | ||||||| | || || Sbjct 893 ATTTTCTTGATTTACCCTATTGGTCAAGAAAGTTTTTCTGATGGTATGCCTTTAGGAATA 952 Query 169832 TCGGGAACCTT 169842 || || || || Sbjct 953 TCTGGTACTTT 963 >seq666 Length=229199 Score = 131 bits (144), Expect = 2e-25 Identities = 176/245 (72%), Gaps = 0/245 (0%) Strand=Plus/Minus Query 171264 ACTCAGGAGGAAGAGACATATTCTATGGTCACTGCTAATCGTTTCTGGTCGCAGATTTTT 171323 ||||| | ||||| || ||||| ||||| |||||| |||| || ||||| || || ||| Sbjct 152525 ACTCAAGCTGAAGAAACTTATTCAATGGTTACTGCTTATCGCTTTTGGTCTCAAATCTTT 152466 Query 171324 GGTATCGCGTTCAGCAATAAGCGTTGGTTGCATTTCTTTATGCTGTTTGTTCCTGTCATG 171383 ||| | || || |||||| | ||||| |||||||||||| | ||||| || |||| Sbjct 152465 GGTGTTGCTTTTCTCAATAAAGGCTGGTTACATTTCTTTATGTTATTTGTACCCGTCACC 152406 Query 171384 GGTCTTTGGGTCAGTAGTCTGGGGATTATTGGTCTTGCTCTTAATCTTAGGGCTTATGAT 171443 ||| | ||| | ||| | | || | |||| || ||| | || || | |||| ||| Sbjct 152405 GGTTTATGGATGAGTGCTATTGGCGTAGTTGGCCTGGCTTTGAACCTACGTGCTTGTGAC 152346 Query 171444 TTCGTAAGTCAGGAGGTCAGAGCAGCAGAAGATCCAGAGTTCGAGACGTTCTATACCAAG 171503 ||| | ||||| || ||||| |||||||| || || ||||| |||||| |||| Sbjct 152345 TTCATTTCCCAGGAAATCCATGCAGCGGAAGATCCTGAATTTGAGACTTTCTATGCCAAA 152286 Query 171504 AACAT 171508 || || Sbjct 152285 AATAT 152281 >seq12572 Length=34890 Score = 100 bits (110), Expect = 3e-16 Identities = 187/272 (69%), Gaps = 6/272 (2%) Strand=Plus/Minus Query 170883 TGGAATTTTGTGGCGCTCCACGGAGCCTTTGCTCTCATAGGTTTCATGCTTCGGCAGTTT 170942 |||| |||||| || ||||| || || ||||| || || ||| ||| | || || ||| Sbjct 26961 TGGACTTTTGTCGCTCTCCATGGGGCTTTTGCACTAATTTTTTTTATGTTACGTCAATTT 26902 Query 170943 GAAATCAGTCG-TCTCGT--AGGGATTAGACCGTACAATGCAATCGCTTTCTCTGGTCCT 170999 ||| | ||| ||| | | | || | |||||||| | ||||||||||| Sbjct 26901 GAACTTGCTCGGTCTGTTCAATTGTTTTTT---TTTAATGCAATTTCATTCTCTGGTCCG 26845 Query 171000 ATCGCTGTGTTTGTCAGCGTGTTCCTCATCTATCCTCTTGGGCAGTCAAGTTGGTTCTTC 171059 ||||||| ||||| | ||||| || ||||| || || || || |||||||||| Sbjct 26844 TTCGCTGTTTTTGTTTTTTTTTTCCTTATTTATCCACTGGGACAATCTGGTTGGTTCTTT 26785 Query 171060 GCACCTTCCTTTGGAGTTGCAGCAATCTTCCGCTTCCTGCTCTTCCTGCAAGGTTTCCAC 171119 | || ||||| || ||||| || || || ||| | || ||| | ||| || Sbjct 26784 GTTTTTTTTTTTGGCGTAGCAGCTATATTTCGATTCATCCTTTTCTTCTTTTTTTTTCAT 26725 Query 171120 AACTGGACACTGAATCCATTTCATATGATGGG 171151 || |||||| | || ||||||||||||||||| Sbjct 26724 AATTGGACATTAAACCCATTTCATATGATGGG 26693 >seq8160 Length=957 Score = 89.7 bits (98), Expect = 6e-13 Identities = 87/112 (78%), Gaps = 0/112 (0%) Strand=Plus/Plus Query 170009 GGTTACAAGTTCGGTCAAGAAGAAGAGACCTACAACATCGTTGCCGCTCACGGTTACTTC 170068 |||||||| || | | |||||||||||||||| || || || || ||||| | ||| || Sbjct 347 GGTTACAAATTTGATTAAGAAGAAGAGACCTATAATATTGTGGCTGCTCATGATTATTTT 406 Query 170069 GGTCGCCTGATCTTCCAATACGCTTCCTTCAACAACTCCCGTTCACTGCACT 170120 ||||| | ||||||||||| || ||||||||||| ||||| | |||| Sbjct 407 GGTCGATTAATCTTCCAATATCCTAGTTTCAACAACTCTCGTTCTTTACACT 458 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 592069330358720