Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eichhornia_20paniculata_20[genbank_20GCA_5F001647135.1_202016-05-02] 40,286 sequences; 571,388,321 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq2510 127 2e-24 seq7765 113 5e-20 seq32078 109 6e-19 >seq2510 Length=43382 Score = 127 bits (140), Expect = 2e-24 Identities = 294/436 (67%), Gaps = 13/436 (3%) Strand=Plus/Minus Query 16961 AGACATGCGAAATCGCAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGTC 17020 || || ||||| ||||| || | ||||||||| | | ||| || ||||| || || || Sbjct 21245 AGGCAGGCGAAGTCGCAGTGGAGTCCCTCGTCACGGGAGATGAGCTCGTTGGAGAAGGTT 21186 Query 17021 AACCCGGGCATCTTTCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCAGAAAAG 17080 | ||| ||||| ||||| ||||| | ||| || || | | ||| || || || ||| Sbjct 21185 AGCCCAGGCATGAGGCCTCGCTTCTTGAGCCAGAAGATGGAGCAGAAGGAGCCGGAGAAG 21126 Query 17081 AATATACCCTCGACGGATGCAAACGCGATTAATCGTTCGGCGTACG-TCGCGTCTTTGTT 17139 || |||||||||||| | ||||| |||| | || ||||| | | | || | || Sbjct 21125 AAGATACCCTCGACGCAGGCAAAGGCGACGATGCGCTCGGCAAAGGAACTCGAC-GAGT- 21068 Query 17140 ACGAATCCATTTCTGCACCCACTCGGCTTTTTGCTTT---ATGCAATCCATCGTTTCTAT 17196 | ||||| | || |||||||||| || |||| | ||| | || || || Sbjct 21067 --GGATCCAACGCAGCGCCCACTCGGCCTT---CTTTCCGACGCAGGGGACGGTCTCGAT 21013 Query 17197 GGCCTTAAATAATTTCTCTTTTTCCTGTAGGTCGATTATATACGTATCGATGAGTAGGCT 17256 || || | | || |||| ||| | || || || |||| ||| ||| Sbjct 21012 CGCGCGGAAGAGGCGCGACTTCTCCTCGGAGTCCTTGATGTAGGTCTCGAGGAGGAGGGA 20953 Query 17257 GTACATTTCGGAGTGTATGTTCTCCATGGCTATCTGAAATCCGTAAAAGCATCGGGCTTC 17316 |||||| |||||||| |||||||| ||||| ||||| || ||||| ||| ||||| || Sbjct 20952 GTACATCTCGGAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAGAAGGCGCGGGCCTC 20893 Query 17317 CGCTATTTGAACTTC-CACGTAGAATCGTTCCGCTAGATTTTCGTTCACGATGCCGTCGC 17375 | | ||| || || || | ||| || | || || || ||| |||||||||||| Sbjct 20892 GGGGACTTGCACGTCGGACAT-GAAGCGGCCGGCGAGGTTCTCGAGGACGATGCCGTCGG 20834 Query 17376 TCGCGGCGAAAAACGC 17391 ||||||||| || || Sbjct 20833 ACGCGGCGAAGAAGGC 20818 Score = 91.5 bits (100), Expect = 2e-13 Identities = 117/159 (74%), Gaps = 2/159 (1%) Strand=Plus/Minus Query 17234 ATATACGTATCGATGAGTAGGCTGTACATTTCGGAGTGTATGTTCTCCATGGCTATCTGA 17293 || || || |||| ||| ||| |||||| |||||||| |||||||| ||||| ||||| Sbjct 20226 ATGTAGGTCTCGAGGAGGAGGGAGTACATCTCGGAGTGGATGTTCTCGATGGCGATCTGG 20167 Query 17294 AATCCGTAAAAGCATCGGGCTTCCGCTATTTGAACTTCC-ACGTAGAATCGTTCCGCTAG 17352 || ||||| ||| ||||| || | | ||| || || || | ||| || | || || Sbjct 20166 AAGCCGTAGAAGGCGCGGGCCTCGGGGACTTGCACGTCGGACAT-GAAGCGGCCGGCGAG 20108 Query 17353 ATTTTCGTTCACGATGCCGTCGCTCGCGGCGAAAAACGC 17391 || ||| |||||||||||| ||||||||| || || Sbjct 20107 GTTCTCGAGGACGATGCCGTCGGACGCGGCGAAGAAGGC 20069 >seq7765 Length=42474 Score = 113 bits (124), Expect = 5e-20 Identities = 291/436 (67%), Gaps = 13/436 (3%) Strand=Plus/Plus Query 16961 AGACATGCGAAATCGCAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGTC 17020 || || ||||| ||||| || | ||||||||| | | ||| || ||||| || || || Sbjct 40032 AGGCAGGCGAAGTCGCAGTGGAGTCCCTCGTCACGGGAGATGAGCTCGTTGGAGAAGGTG 40091 Query 17021 AACCCGGGCATCTTTCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCAGAAAAG 17080 | ||| ||||| || || ||||| | ||| || || | | || || || || ||| Sbjct 40092 AGCCCAGGCATGAGGCCCCGCTTCTTGAGCCAGAAGATGGAGCAAAAGGAGCCGGAGAAG 40151 Query 17081 AATATACCCTCGACGGATGCAAACGCGATTAATCGTTCGGCGTACGT-CGCGTCTTTGTT 17139 || |||||||||||| | ||||| |||| | || ||||| | | | || | || Sbjct 40152 AAGATACCCTCGACGCAGGCAAAGGCGACGATGCGCTCGGCAAAGGAGCTCGACGA-GT- 40209 Query 17140 ACGAATCCATTTCTGCACCCACTCGGCTTTTTGCTTT---ATGCAATCCATCGTTTCTAT 17196 | ||||| | | |||| ||||| || |||| | ||| | ||||| || Sbjct 40210 --GGATCCAACGCAGAGCCCAGTCGGCCTT---CTTTCCGACGCAGGGGACGGTTTCGAT 40264 Query 17197 GGCCTTAAATAATTTCTCTTTTTCCTGTAGGTCGATTATATACGTATCGATGAGTAGGCT 17256 || || | | || |||| ||| | || || || |||| ||| ||| Sbjct 40265 CGCGCGGAAGAGGCGCGACTTCTCCTCGGAGTCCTTGATGTAGGTCTCGAGGAGGAGGGA 40324 Query 17257 GTACATTTCGGAGTGTATGTTCTCCATGGCTATCTGAAATCCGTAAAAGCATCGGGCTTC 17316 |||||| |||||||| |||||||| ||||| ||||| || ||||| ||| ||||| || Sbjct 40325 GTACATCTCGGAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAGAAGGCGCGGGCCTC 40384 Query 17317 CGCTATTTGAACTTCC-ACGTAGAATCGTTCCGCTAGATTTTCGTTCACGATGCCGTCGC 17375 | | ||| || || || | ||| || | || || || ||| |||||||||||| Sbjct 40385 GGGGACTTGCACGTCGGACAT-GAAGCGGCCGGCGAGGTTCTCGAGGACGATGCCGTCGG 40443 Query 17376 TCGCGGCGAAAAACGC 17391 ||||||||| || || Sbjct 40444 ACGCGGCGAAGAAGGC 40459 >seq32078 Length=1569 Score = 109 bits (120), Expect = 6e-19 Identities = 290/436 (67%), Gaps = 13/436 (3%) Strand=Plus/Minus Query 16961 AGACATGCGAAATCGCAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGTC 17020 || || ||||| ||||| || | |||||||| | | ||| || ||||| || || || Sbjct 1151 AGGCAGGCGAAGTCGCAGTGGAGACCCTCGTCACGGGAGATGAGCTCGTTGGAGAAGGTG 1092 Query 17021 AACCCGGGCATCTTTCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCAGAAAAG 17080 | ||| ||||| || || ||||| | ||| || || | | || || || || ||| Sbjct 1091 AGCCCAGGCATGAGGCCCCGCTTCTTGAGCCAGAAGATGGAGCAAAAGGAGCCGGAGAAG 1032 Query 17081 AATATACCCTCGACGGATGCAAACGCGATTAATCGTTCGGCGTACGT-CGCGTCTTTGTT 17139 || |||||||||||| | ||||| |||| | || ||||| | | | || | || Sbjct 1031 AAGATACCCTCGACGCAGGCAAAGGCGACGATGCGCTCGGCAAAGGAGCTCGACGA-GT- 974 Query 17140 ACGAATCCATTTCTGCACCCACTCGGCTTTTTGCTTT---ATGCAATCCATCGTTTCTAT 17196 | ||||| | | |||| ||||| || |||| | ||| | ||||| || Sbjct 973 --GGATCCAACGCAGAGCCCAGTCGGCCTT---CTTTCCGACGCAGGGGACGGTTTCGAT 919 Query 17197 GGCCTTAAATAATTTCTCTTTTTCCTGTAGGTCGATTATATACGTATCGATGAGTAGGCT 17256 || || | | || |||| ||| | || || || |||| ||| ||| Sbjct 918 CGCGCGGAAGAGGCGCGACTTCTCCTCGGAGTCCTTGATGTAGGTCTCGAGGAGGAGGGA 859 Query 17257 GTACATTTCGGAGTGTATGTTCTCCATGGCTATCTGAAATCCGTAAAAGCATCGGGCTTC 17316 |||||| |||||||| |||||||| ||||| ||||| || ||||| ||| ||||| || Sbjct 858 GTACATCTCGGAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAGAAGGCGCGGGCCTC 799 Query 17317 CGCTATTTGAACTTCC-ACGTAGAATCGTTCCGCTAGATTTTCGTTCACGATGCCGTCGC 17375 | | ||| || || || | ||| || | || || || ||| |||||||||||| Sbjct 798 GGGGACTTGCACGTCGGACAT-GAAGCGGCCGGCGAGGTTCTCGAGGACGATGCCGTCGG 740 Query 17376 TCGCGGCGAAAAACGC 17391 ||||||||| || || Sbjct 739 ACGCGGCGAAGAAGGC 724 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 517284976974480