Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eichhornia_20paniculata_20[genbank_20GCA_5F001647135.1_202016-05-02] 40,286 sequences; 571,388,321 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq3117 96.9 4e-15 seq32078 91.5 2e-13 >seq3117 Length=39173 Score = 96.9 bits (106), Expect = 4e-15 Identities = 107/143 (75%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 53951 TCAAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACACATCAACGAC 54010 ||||| |||||||||||| || ||||||| ||| ||||| || || | ||| ||| Sbjct 13840 TCAAATTCGTCTCCCCAACAATCAGCCAATCCTGGAGCTTCATTAGGGCAAAACAATGAC 13899 Query 54011 CACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAAT 54070 || | || | ||||| || | || ||| ||||| || ||||||||||| || | |||| Sbjct 13900 CATTGACCATTATCCTGAACCCTTTGCATGAAGAGGTCGGGAATCCAAAGTGCAAAAAAT 13959 Query 54071 AGATCTCTGGTTCTATGTTCCTC 54093 ||||| || | |||||| || || Sbjct 13960 AGATCCCTTGCTCTATGCTCTTC 13982 Score = 91.5 bits (100), Expect = 2e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 54424 AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATT 54483 ||| || ||||| || ||||| || ||||| || || ||||| || ||| | |||| Sbjct 14891 AGTGCCTGCATTGAACAAGGTCGGCGAAGCATGAGTGAACCAACGTTGAGACATCAGATG 14950 Query 54484 GTACGTCTCGATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAA 54543 ||| || ||| || || || || || || || ||||| || | || | ||| || Sbjct 14951 GTATGTTCTGATGGCAGACTCAATGTCATCTTTGTGGATTCCAACAGATACTCTCATCAA 15010 Query 54544 CATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAGCAAGTAGGATTTTTCCAA 54603 ||||||||| ||||| || || | ||| | ||||| || || || |||| | Sbjct 15011 CATGTGCTGCGGTCTCTCCACAACCTTTCCAGAAACTTTCAACAGATATGACCTTTCGAG 15070 Query 54604 AGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 54651 ||||||||| ||||| |||| || |||||| || || ||||| || Sbjct 15071 AGTTTTAAATCCAAAGTAGTCATAGTCAAAGTCACGGTCATAAATTAT 15118 >seq32078 Length=1569 Score = 91.5 bits (100), Expect = 2e-13 Identities = 106/143 (74%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 24135 CATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGT 24194 || ||||| |||||||| ||||||||||| | || | |||||||| || ||||| Sbjct 1148 CAGGCGAAGTCGCAGTGGAGACCCTCGTCACGGGAGATGAGCTCGTTGGAGAAGGTGAGC 1089 Query 24195 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAA 24254 || ||||| ||||| ||||| || ||||| || ||||| ||| || || || ||||| Sbjct 1088 CCAGGCATGAGGCCCCGCTTCTTGAGCCAGAAGATGGAGCAAAAGGAGCCGGAGAAGAAG 1029 Query 24255 ATTCCTTCTACTGCCGCAAAGGC 24277 || || || || |||||||| Sbjct 1028 ATACCCTCGACGCAGGCAAAGGC 1006 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593422616645280