Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eichhornia_20paniculata_20[genbank_20GCA_5F001647135.1_202016-05-02] 40,286 sequences; 571,388,321 total letters Query= NC_001993.1 Length=236120 Score E Sequences producing significant alignments: (Bits) Value seq490 116 6e-21 seq2385 91.5 2e-13 >seq490 Length=81643 Score = 116 bits (128), Expect = 6e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| ||||| | ||||| || || ||||| || ||||| | ||| ||||| | Sbjct 59514 ATGCAGATATTCGTCAAGACTCTGACTGGCAAGACCATAACCCTTGAGGTTGAATCTTCA 59573 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || || ||| ||| | || |||||||| || ||||| || || || || || ||| Sbjct 59574 GACACCATTGACAATGTCAAGGCAAAAATTCAGGACAAAGAGGGCATTCCTCCAGACCAA 59633 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 || ||||| || ||||| || || || | |||||| | || || ||| ||| || ||| Sbjct 59634 CAGAGGCTCATCTTTGCGGGGAAGCAGCTTGAGGATGGGCGCACCCTAGCAGACTACAAT 59693 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGG 124765 |||||||| || ||||| ||||| ||||| | || | || ||||| Sbjct 59694 ATTCAAAAGGAGTCAACCCTGCATCTGGTTCTTCGCCTCCGTGGTGG 59740 >seq2385 Length=44452 Score = 91.5 bits (100), Expect = 2e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597 |||||| || ||| | ||||| || || ||||| || || || | ||| ||||| | Sbjct 34877 AATGCAGATCTTTGTCAAGACCCTGACTGGCAAGACCATTACCCTTGAGGTTGAATCTTC 34936 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 || || ||| || | || || ||||| || ||||| || || || || || || Sbjct 34937 AGACACCATTGACAACGTCAAGGCAAAGATTCAGGACAAAGAGGGCATTCCTCCGGACCA 34996 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 || ||||| || ||||| || || || | ||||| | || || ||| ||| || || Sbjct 34997 GCAGAGGCTCATCTTTGCTGGGAAGCAGCTTGAGGACGGGCGCACCCTAGCAGACTACAA 35056 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGG 124765 ||||||||| || || || ||||| ||||| | || | || ||||| Sbjct 35057 TATTCAAAAGGAGTCGACCCTGCATCTGGTTCTTCGCCTCCGTGGTGG 35104 Score = 89.7 bits (98), Expect = 8e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| || ||| | ||||| || || |||||||| || || | ||| |||| || Sbjct 34650 ATGCAGATCTTTGTGAAGACGCTGACTGGCAAAACGATCACCCTTGAGGTTGAGTCATCG 34709 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || || || ||| | || || || ||||| || || || || || || || || Sbjct 34710 GACACCATCGACAATGTTAAGGCCAAGATCCAAGACAAGGAGGGCATCCCCCCGGACCAG 34769 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 |||||||| ||||||||||| || || | |||||| | || || || | ||||| || Sbjct 34770 CAAAGGCTCATTTTTGCAGGGAAGCAGCTTGAGGATGGACGCACTTTGGCTGATTACAAC 34829 Query 124719 ATTCAAAAAGAATCAAC 124735 || ||||| ||||| || Sbjct 34830 ATCCAAAAGGAATCTAC 34846 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 755075571244800