Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eichhornia_20paniculata_20[genbank_20GCA_5F001647135.1_202016-05-02] 40,286 sequences; 571,388,321 total letters Query= NC_003083.1 Length=118584 Score E Sequences producing significant alignments: (Bits) Value seq2385 91.5 1e-13 seq490 89.7 4e-13 >seq2385 Length=44452 Score = 91.5 bits (100), Expect = 1e-13 Identities = 160/233 (69%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 ||||| || || | || || | ||| |||||||| || || || ||||||||||| ||| Sbjct 34041 CCTCCACGAAGACGGAGAACAAGGTGGAGTGTTGACTCCTTCTGGATGTTGTAGTCAGCC 33982 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | || | ||| || | ||||||||| ||| |||| || | || || ||| || Sbjct 33981 AGGGTGCGGCCATCCTCGAGTTGTTTGCCAGCAAAGATCAGACGCTGCTGGTCCGGAGGA 33922 Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTT 18278 | || ||||| || ||||| ||| || | | | || || | |||| Sbjct 33921 ATTCCCTCCTTGTCCTGAATTTTGGCCTTAACATTGTCGATTGTATCGGATGACTCGACC 33862 Query 18279 TCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCATTTTTAA 18331 |||| |||||| | || ||||||||||| |||||||| |||||||| | ||| Sbjct 33861 TCAAGAGTGATGGTCTTCCCGGTCAATGTCTTTACAAAGATTTGCATCTGTAA 33809 >seq490 Length=81643 Score = 89.7 bits (98), Expect = 4e-13 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 18114 AGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCT 18173 || || | ||| |||||||| || || || ||||||||||| |||| || | ||| Sbjct 58585 AGAACAAGGTGGAGTGTTGACTCCTTCTGGATGTTGTAGTCAGCCAGGGTACGGCCATCC 58526 Query 18174 TCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCG 18233 || | |||||||| ||| |||| || | ||| || ||| || | || ||||| || Sbjct 58525 TCGAGCTGTTTGCCAGCAAAGATCAGACGTTGCTGGTCCGGAGGGATACCCTCCTTGTCC 58466 Query 18234 GCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTT 18293 ||||| |||||| | ||| || ||| | |||| |||| |||||| | Sbjct 58465 TGAATTTTGGCCTTGACATTATCAATTGTATCAGATGACTCGACCTCAAGAGTGATGGTC 58406 Query 18294 TTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 ||||| |||||||| || || || |||||||| Sbjct 58405 TTGCCTGTCAATGTCTTGACGAAGATTTGCAT 58374 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 || || || || | ||| || | ||| || || || || ||||||||||||||||| ||| Sbjct 58828 CCACCACGAAGCCGAAGCACAAGGTGGAGCGTGGACTCCTTTTGAATGTTGTAGTCAGCC 58769 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | || || ||| |||||||| ||||| ||| |||| || | || || ||| ||| Sbjct 58768 AGGGTGCGACCATCCTCCAATTGCTTGCCTGCAAAGATCAGACGCTGCTGGTCCGGGGGG 58709 Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTT 18278 | || ||||| || || | |||||| | ||| ||| || | ||| Sbjct 58708 ATTCCCTCCTTGTCCTGGATCTTGGCCTTGACATTGTCAATAGTATCTGAAGACTCAACC 58649 Query 18279 TCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 |||| ||||| | ||||| ||||| || || ||||| || ||||| Sbjct 58648 TCAAGAGTGATTGTCTTGCCTGTCAAGGTCTTCACAAAGATCTGCAT 58602 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 379157747549070