Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eichhornia_20paniculata_20[genbank_20GCA_5F001647135.1_202016-05-02] 40,286 sequences; 571,388,321 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq32078 91.5 2e-13 seq3117 91.5 2e-13 >seq32078 Length=1569 Score = 91.5 bits (100), Expect = 2e-13 Identities = 106/143 (74%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 36158 CATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGT 36217 || ||||| |||||||| ||||||||||| | || | |||||||| || ||||| Sbjct 1148 CAGGCGAAGTCGCAGTGGAGACCCTCGTCACGGGAGATGAGCTCGTTGGAGAAGGTGAGC 1089 Query 36218 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAA 36277 || ||||| ||||| ||||| || ||||| || ||||| ||| || || || ||||| Sbjct 1088 CCAGGCATGAGGCCCCGCTTCTTGAGCCAGAAGATGGAGCAAAAGGAGCCGGAGAAGAAG 1029 Query 36278 ATTCCTTCTACTGCCGCAAAGGC 36300 || || || || |||||||| Sbjct 1028 ATACCCTCGACGCAGGCAAAGGC 1006 >seq3117 Length=39173 Score = 91.5 bits (100), Expect = 2e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 66455 AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATT 66514 ||| || ||||| || ||||| || ||||| || || ||||| || ||| | |||| Sbjct 14891 AGTGCCTGCATTGAACAAGGTCGGCGAAGCATGAGTGAACCAACGTTGAGACATCAGATG 14950 Query 66515 GTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAA 66574 ||| || || || || || || || || || ||||| || | || | ||| || Sbjct 14951 GTATGTTCTGATGGCAGACTCAATGTCATCTTTGTGGATTCCAACAGATACTCTCATCAA 15010 Query 66575 CATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAA 66634 ||||||||| ||||| || || | ||| | |||||||| || || |||| | Sbjct 15011 CATGTGCTGCGGTCTCTCCACAACCTTTCCAGAAACTTTCAACAGATATGACCTTTCGAG 15070 Query 66635 AGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 66682 ||||||||| ||||| |||| || |||||| || || ||||| || Sbjct 15071 AGTTTTAAATCCAAAGTAGTCATAGTCAAAGTCACGGTCATAAATTAT 15118 Score = 87.8 bits (96), Expect = 2e-12 Identities = 105/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 65982 TCGAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACACATCAACGAC 66041 || || |||||||||||| || ||||||| ||| ||||| || || | ||| ||| Sbjct 13840 TCAAATTCGTCTCCCCAACAATCAGCCAATCCTGGAGCTTCATTAGGGCAAAACAATGAC 13899 Query 66042 CACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAAT 66101 || | || | ||||| || | || ||| ||||| || ||||||||||| || | |||| Sbjct 13900 CATTGACCATTATCCTGAACCCTTTGCATGAAGAGGTCGGGAATCCAAAGTGCAAAAAAT 13959 Query 66102 AAATCTCTGGTTCTATGTTCCTC 66124 | ||| || | |||||| || || Sbjct 13960 AGATCCCTTGCTCTATGCTCTTC 13982 Score = 86.0 bits (94), Expect = 8e-12 Identities = 158/232 (68%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 66206 CCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGG 66265 || |||| |||||| ||||| | || | || || | ||| |||| |||| ||| || Sbjct 14545 CCTTTTGCCTCCTCCTTGATCAACATAACGTGCAGTATCATTGAAAACCCTCAGCATAGG 14604 Query 66266 AATAATACCATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTTGCACGAATATT 66325 || ||| ||||| ||||| ||||| || || ||| || || || |||| || || || Sbjct 14605 AACAATGCCATTAGATGTTCCATTTGTACCACGGATGTAACTACCTGTTGCTCGGATGTT 14664 Query 66326 ACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGT 66385 || ||| | || ||||| || || || |||| || || || | || Sbjct 14665 GTGAACTGAAACTCCAATTCCTCCAGCAGACTTGCTTATTATAGCACACTCCTTAAGAGT 14724 Query 66386 ATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTA 66437 ||||||||||||||| || |||||||| ||||| | || ||||| ||| Sbjct 14725 ATCATAGATGCCCTCAATGCTATCATCTTTCATGCATATCAGGAAACAACTA 14776 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 657841360632240