Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Eichhornia_20paniculata_20[genbank_20GCA_5F001647135.1_202016-05-02]
40,286 sequences; 571,388,321 total letters
Query= NC_003529.1
Length=155060
Score E
Sequences producing significant alignments: (Bits) Value
seq490 104 2e-17
seq410 95.1 1e-14
seq5010 87.8 2e-12
>seq490
Length=81643
Score = 104 bits (114), Expect = 2e-17
Identities = 162/229 (71%), Gaps = 2/229 (1%)
Strand=Plus/Minus
Query 139537 GCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCT 139596
||| || || | || | ||| | ||| | || ||||| || || ||||| || ||
Sbjct 58601 GCCACCACGAAGGCGGAGAACAAGGTGGAGTGTTGACTCCTTCTGGATGTTGTAGTCAGC 58542
Query 139597 CATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656
|| || | || ||||||||||| |||||| |||||||||||||||| || |||||
Sbjct 58541 CAGGGTACGGCCATCCTCGAGCTGTTTGCCAGCAAAGATCAGACGTTGCTGGTCCGGAGG 58482
Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCA 139715
|| || || ||||| ||| |||| | || | | || | ||| || | | ||| |
Sbjct 58481 GATACCCTCCTTGTC-CTGAATTTTGGCCTTGACATTATCAATTGTATCAGATGACTCGA 58423
Query 139716 CCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764
|||||| || | |||||||| ||||| || || ||||| ||||||||
Sbjct 58422 CCTCAAGAGTGATGGTCTTGCCTGTCAATGTCTTGACGAAGATTTGCAT 58374
Score = 98.7 bits (108), Expect = 1e-15
Identities = 160/228 (70%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597
|| || || | ||| | || | ||| | |||||| || |||||||||||||||||
Sbjct 59056 CCACCACGGAGACGGAGGACAAGGTGGAGCGTAGATTCCTTTTGAATGTTATAATCAGCA 58997
Query 139598 ATTGTGC-TCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656
| || | || | || || ||||| || || ||| |||| || | |||||| || || ||
Sbjct 58996 AGAGTACGTCCA-TCCTCAAGCTGCTTCCCTGCAAAGATGAGCCTTTGCTGGTCAGGGGG 58938
Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716
||||| ||||| || ||| || ||| | | || | ||||| | || ||| ||
Sbjct 58937 GATGCCCTCTTTATCCTGGATCTTCGCTTTGACATTGTCAATGGTGTCCGAGGACTCAAC 58878
Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764
||||| ||| | |||||||| ||||| || || || || || |||||
Sbjct 58877 CTCAAGGGTGATAGTCTTGCCCGTCAATGTCTTCACAAAGATCTGCAT 58830
>seq410
Length=85275
Score = 95.1 bits (104), Expect = 1e-14
Identities = 157/227 (69%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597
||||| || | ||| | || | ||||| || ||||| || || ||||| ||||||
Sbjct 46595 CCGCCACGAAGACGAAGGACGAGGTGAAGAGTGGACTCCTTCTGGATGTTGTAATCGGCG 46536
Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657
| ||||| ||| |||||||| || || || |||| || || || || || || |||
Sbjct 46535 AGTGTGCGTCCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGCCGCTGTTGGTCCGGCGGT 46476
Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717
|| || || ||||| ||| || || | | || | ||||| | | |||||||
Sbjct 46475 ATTCCCTCCTTGTCCTGGATCTTCGCCTTCACGTTGTCGATGGTGTCCGATGACTCCACC 46416
Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764
|||| ||| | |||||| ||||| | || || ||||| || |||||
Sbjct 46415 TCAAGGGTGATCGTCTTCCCGGTGAGAGTCTTCACGAAGATCTGCAT 46369
>seq5010
Length=51657
Score = 87.8 bits (96), Expect = 2e-12
Identities = 156/228 (68%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597
|| || || | ||| | ||| | ||| | || ||||| || || |||||||| |||
Sbjct 38290 CCACCACGGAGACGGAGAACCAGGTGGAGGGTGGACTCCTTCTGGATGTTATAGTCGGCG 38231
Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657
| |||| || |||||||| ||||| ||| |||||| | ||||| || || ||
Sbjct 38230 AGGGTGCGGCCATCCTCGAGCTGCTTACCGGCAAAGATCAACCTCTGCTGGTCCGGGGGG 38171
Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717
||||| || ||||| ||| || || | | || | ||||| | | ||| |||
Sbjct 38170 ATGCCCTCCTTGTCCTGGATCTTGGCCTTCACGTTGTCGATGGTGTCAGAGCTCTCGACC 38111
Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765
|| | ||| | ||||||||||||| || || ||||| || ||||||
Sbjct 38110 TCCAAGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCATA 38063
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 495814194571200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |