Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eichhornia_20paniculata_20[genbank_20GCA_5F001647135.1_202016-05-02] 40,286 sequences; 571,388,321 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq490 104 2e-17 seq410 95.1 1e-14 seq5010 87.8 2e-12 >seq490 Length=81643 Score = 104 bits (114), Expect = 2e-17 Identities = 162/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 139537 GCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCT 139596 ||| || || | || | ||| | ||| | || ||||| || || ||||| || || Sbjct 58601 GCCACCACGAAGGCGGAGAACAAGGTGGAGTGTTGACTCCTTCTGGATGTTGTAGTCAGC 58542 Query 139597 CATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 || || | || ||||||||||| |||||| |||||||||||||||| || ||||| Sbjct 58541 CAGGGTACGGCCATCCTCGAGCTGTTTGCCAGCAAAGATCAGACGTTGCTGGTCCGGAGG 58482 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCA 139715 || || || ||||| ||| |||| | || | | || | ||| || | | ||| | Sbjct 58481 GATACCCTCCTTGTC-CTGAATTTTGGCCTTGACATTATCAATTGTATCAGATGACTCGA 58423 Query 139716 CCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 |||||| || | |||||||| ||||| || || ||||| |||||||| Sbjct 58422 CCTCAAGAGTGATGGTCTTGCCTGTCAATGTCTTGACGAAGATTTGCAT 58374 Score = 98.7 bits (108), Expect = 1e-15 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || || | ||| | || | ||| | |||||| || ||||||||||||||||| Sbjct 59056 CCACCACGGAGACGGAGGACAAGGTGGAGCGTAGATTCCTTTTGAATGTTATAATCAGCA 58997 Query 139598 ATTGTGC-TCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 | || | || | || || ||||| || || ||| |||| || | |||||| || || || Sbjct 58996 AGAGTACGTCCA-TCCTCAAGCTGCTTCCCTGCAAAGATGAGCCTTTGCTGGTCAGGGGG 58938 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 ||||| ||||| || ||| || ||| | | || | ||||| | || ||| || Sbjct 58937 GATGCCCTCTTTATCCTGGATCTTCGCTTTGACATTGTCAATGGTGTCCGAGGACTCAAC 58878 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||||| ||| | |||||||| ||||| || || || || || ||||| Sbjct 58877 CTCAAGGGTGATAGTCTTGCCCGTCAATGTCTTCACAAAGATCTGCAT 58830 >seq410 Length=85275 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 ||||| || | ||| | || | ||||| || ||||| || || ||||| |||||| Sbjct 46595 CCGCCACGAAGACGAAGGACGAGGTGAAGAGTGGACTCCTTCTGGATGTTGTAATCGGCG 46536 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | ||||| ||| |||||||| || || || |||| || || || || || || ||| Sbjct 46535 AGTGTGCGTCCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGCCGCTGTTGGTCCGGCGGT 46476 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717 || || || ||||| ||| || || | | || | ||||| | | ||||||| Sbjct 46475 ATTCCCTCCTTGTCCTGGATCTTCGCCTTCACGTTGTCGATGGTGTCCGATGACTCCACC 46416 Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 |||| ||| | |||||| ||||| | || || ||||| || ||||| Sbjct 46415 TCAAGGGTGATCGTCTTCCCGGTGAGAGTCTTCACGAAGATCTGCAT 46369 >seq5010 Length=51657 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || || | ||| | ||| | ||| | || ||||| || || |||||||| ||| Sbjct 38290 CCACCACGGAGACGGAGAACCAGGTGGAGGGTGGACTCCTTCTGGATGTTATAGTCGGCG 38231 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | |||| || |||||||| ||||| ||| |||||| | ||||| || || || Sbjct 38230 AGGGTGCGGCCATCCTCGAGCTGCTTACCGGCAAAGATCAACCTCTGCTGGTCCGGGGGG 38171 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717 ||||| || ||||| ||| || || | | || | ||||| | | ||| ||| Sbjct 38170 ATGCCCTCCTTGTCCTGGATCTTGGCCTTCACGTTGTCGATGGTGTCAGAGCTCTCGACC 38111 Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 || | ||| | ||||||||||||| || || ||||| || |||||| Sbjct 38110 TCCAAGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCATA 38063 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 495814194571200