Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eichhornia_20paniculata_20[genbank_20GCA_5F001647135.1_202016-05-02] 40,286 sequences; 571,388,321 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq32078 116 5e-21 seq7765 111 2e-19 seq3117 100 4e-16 >seq32078 Length=1569 Score = 116 bits (128), Expect = 5e-21 Identities = 232/341 (68%), Gaps = 6/341 (2%) Strand=Plus/Minus Query 49960 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGT 50019 || ||||| |||||||| ||||||||||| | || || |||||||| || ||||| Sbjct 1148 CAGGCGAAGTCGCAGTGGAGACCCTCGTCACGGGAGATGAGCTCGTTGGAGAAGGTGAGC 1089 Query 50020 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAG 50079 || ||||| ||||| ||||| || ||||| || ||||| ||| || || || |||||| Sbjct 1088 CCAGGCATGAGGCCCCGCTTCTTGAGCCAGAAGATGGAGCAAAAGGAGCCGGAGAAGAAG 1029 Query 50080 ATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTGGCGCT-GTC--ATGT 50136 || || || || ||||||||| || | | ||| || | || ||| | | || Sbjct 1028 ATACCCTCGACGCAGGCAAAGGCGACGATGCGCTCGGCAAA---GGAGCTCGACGAGTGG 972 Query 50137 ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTA 50196 ||||| ||||||| |||||||||||| || || || | ||||| || || Sbjct 971 ATCCAACGCAGAGCCCAGTCGGCCTTCTTTCCGACGCAGGGGACGGTTTCGATCGCGCGG 912 Query 50197 AAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATT 50256 ||||| || || | || || | || || |||| | || ||||| Sbjct 911 AAGAGGCGCGACTTCTCCTCGGAGTCCTTGATGTAGGTCTCGAGGAGGAGGGAGTACATC 852 Query 50257 TCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAA 50297 || || || ||||| || ||||| ||||| || |||||||| Sbjct 851 TCGGAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAGAA 811 >seq7765 Length=42474 Score = 111 bits (122), Expect = 2e-19 Identities = 231/341 (68%), Gaps = 6/341 (2%) Strand=Plus/Plus Query 49960 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGT 50019 || ||||| |||||||| || |||||||| | || || |||||||| || ||||| Sbjct 40035 CAGGCGAAGTCGCAGTGGAGTCCCTCGTCACGGGAGATGAGCTCGTTGGAGAAGGTGAGC 40094 Query 50020 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAG 50079 || ||||| ||||| ||||| || ||||| || ||||| ||| || || || |||||| Sbjct 40095 CCAGGCATGAGGCCCCGCTTCTTGAGCCAGAAGATGGAGCAAAAGGAGCCGGAGAAGAAG 40154 Query 50080 ATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTGGCGCT-GTCATGT-- 50136 || || || || ||||||||| || | | ||| || | || ||| | | || Sbjct 40155 ATACCCTCGACGCAGGCAAAGGCGACGATGCGCTCGGCAAA---GGAGCTCGACGAGTGG 40211 Query 50137 ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTA 50196 ||||| ||||||| |||||||||||| || || || | ||||| || || Sbjct 40212 ATCCAACGCAGAGCCCAGTCGGCCTTCTTTCCGACGCAGGGGACGGTTTCGATCGCGCGG 40271 Query 50197 AAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATT 50256 ||||| || || | || || | || || |||| | || ||||| Sbjct 40272 AAGAGGCGCGACTTCTCCTCGGAGTCCTTGATGTAGGTCTCGAGGAGGAGGGAGTACATC 40331 Query 50257 TCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAA 50297 || || || ||||| || ||||| ||||| || |||||||| Sbjct 40332 TCGGAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAGAA 40372 >seq3117 Length=39173 Score = 100 bits (110), Expect = 4e-16 Identities = 108/143 (76%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 79861 TCGAACTCGTCTCCCCAAACATCGTCTAATCCAGGACATTCGTCAGGACACATCAACGAC 79920 || || |||||||||||| ||| | ||||| ||| ||| | ||| || | ||| ||| Sbjct 13840 TCAAATTCGTCTCCCCAACAATCAGCCAATCCTGGAGCTTCATTAGGGCAAAACAATGAC 13899 Query 79921 CACTCTCCATCATCCTTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAAT 79980 || | |||| ||||| || | || ||| ||||| || ||||||||||| || | |||| Sbjct 13900 CATTGACCATTATCCTGAACCCTTTGCATGAAGAGGTCGGGAATCCAAAGTGCAAAAAAT 13959 Query 79981 AGATCTCTGGTTCTATGCTCCTC 80003 ||||| || | ||||||||| || Sbjct 13960 AGATCCCTTGCTCTATGCTCTTC 13982 Score = 100 bits (110), Expect = 4e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 80334 AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATT 80393 ||| || ||||| || ||||| || ||||| || || ||||| || ||||| |||| Sbjct 14891 AGTGCCTGCATTGAACAAGGTCGGCGAAGCATGAGTGAACCAACGTTGAGACATCAGATG 14950 Query 80394 GTACGTCTCAATAGCTGATTCTATATCCCATTGATGAATTCCTACCGCGACACGCATTAA 80453 ||| || || || || || || || || || ||||| || | || | ||| || Sbjct 14951 GTATGTTCTGATGGCAGACTCAATGTCATCTTTGTGGATTCCAACAGATACTCTCATCAA 15010 Query 80454 CATGTGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAAGATTTTTCCAA 80513 ||||||||| ||||| || || | ||| | | |||||||| || || |||| | Sbjct 15011 CATGTGCTGCGGTCTCTCCACAACCTTTCCAGAAACTTTCAACAGATATGACCTTTCGAG 15070 Query 80514 AGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 80561 ||||||||| ||||| |||| || |||||| || || ||||| || Sbjct 15071 AGTTTTAAATCCAAAGTAGTCATAGTCAAAGTCACGGTCATAAATTAT 15118 Score = 84.2 bits (92), Expect = 3e-11 Identities = 156/229 (68%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 80088 TTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAAT 80147 |||| |||||| ||||| | || | || || | ||| |||| |||| ||| |||| Sbjct 14548 TTTGCCTCCTCCTTGATCAACATAACGTGCAGTATCATTGAAAACCCTCAGCATAGGAAC 14607 Query 80148 AATACCATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACT 80207 ||| ||||| ||||| ||||| || || ||| || || || | || || || || Sbjct 14608 AATGCCATTAGATGTTCCATTTGTACCACGGATGTAACTACCTGTTGCTCGGATGTTGTG 14667 Query 80208 AATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATC 80267 || ||| | || ||||| || || || |||| || || || | ||||| Sbjct 14668 AACTGAAACTCCAATTCCTCCAGCAGACTTGCTTATTATAGCACACTCCTTAAGAGTATC 14727 Query 80268 ATAGATGCCCTCTATGCTATCATCAATCATGTTAAGTAGAAAACAGCTA 80316 |||||||||||| ||||||||||| ||||| | || ||||| ||| Sbjct 14728 ATAGATGCCCTCAATGCTATCATCTTTCATGCATATCAGGAAACAACTA 14776 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 717907097789040