Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eichhornia_20paniculata_20[genbank_20GCA_5F001647135.1_202016-05-02] 40,286 sequences; 571,388,321 total letters Query= NC_004117.1 Length=158482 Score E Sequences producing significant alignments: (Bits) Value seq2385 109 6e-19 seq490 96.9 4e-15 >seq2385 Length=44452 Score = 109 bits (120), Expect = 6e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 142957 GCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCT 143016 |||||| || | ||| | ||| | || | ||| || || || || |||||||| || Sbjct 34042 GCCTCCACGAAGACGGAGAACAAGGTGGAGTGTTGACTCCTTCTGGATGTTGTAGTCAGC 33983 Query 143017 CATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 143076 || |||| || ||||||||||| |||||| |||||||||| ||||| || ||||| Sbjct 33982 CAGGGTGCGGCCATCCTCGAGTTGTTTGCCAGCAAAGATCAGACGCTGCTGGTCCGGAGG 33923 Query 143077 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTAC 143136 || || || ||||| |||||| || | | || | || || | | || || Sbjct 33922 AATTCCCTCCTTGTCCTGAATTTTGGCCTTAACATTGTCGATTGTATCGGATGACTCGAC 33863 Query 143137 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 |||| ||| | ||||| ||||||||||| ||||| || |||||||| Sbjct 33862 CTCAAGAGTGATGGTCTTCCCGGTCAATGTCTTTACAAAGATTTGCAT 33815 >seq490 Length=81643 Score = 96.9 bits (106), Expect = 4e-15 Identities = 140/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 142987 TGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGTTTACC 143046 ||| || || || || |||||||| || || || | || ||||| ||||| || Sbjct 58571 TGTTGACTCCTTCTGGATGTTGTAGTCAGCCAGGGTACGGCCATCCTCGAGCTGTTTGCC 58512 Query 143047 AGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTT 143106 |||| |||||||||||||||| || ||||| || || || ||||| |||||| || Sbjct 58511 AGCAAAGATCAGACGTTGCTGGTCCGGAGGGATACCCTCCTTGTCCTGAATTTTGGCCTT 58452 Query 143107 TAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGT 143166 | | || | || || | | || || |||| ||| | |||||||| |||||||| Sbjct 58451 GACATTATCAATTGTATCAGATGACTCGACCTCAAGAGTGATGGTCTTGCCTGTCAATGT 58392 Query 143167 TTTTACGAATATTTGCAT 143184 || ||||| |||||||| Sbjct 58391 CTTGACGAAGATTTGCAT 58374 Score = 84.2 bits (92), Expect = 2e-11 Identities = 140/200 (70%), Gaps = 2/200 (1%) Strand=Plus/Minus Query 142987 TGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGC-TCGAGTCTTCGAGTTGTTTAC 143045 ||||||||| || || ||||||||||| | |||| || | |||||||| || || | Sbjct 59255 TGTAGATTCCTTCTGGATGTTGTAATCAGCAAGGGTGCGTCCA-TCTTCGAGCTGCTTCC 59197 Query 143046 CAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTT 143105 | ||| | || || | |||||| || || || ||||| || ||||| ||| ||| | Sbjct 59196 CTGCAAATATGAGTCTTTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGAATCTTTGCCT 59137 Query 143106 TTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATG 143165 | | | || | ||||| | | ||| || |||| || | ||||| || ||||| | Sbjct 59136 TGACGTTGTCAATGGTGTCTGACGATTCAACCTCAAGGGTAATAGTCTTACCAGTCAAGG 59077 Query 143166 TTTTTACGAATATTTGCATA 143185 | || || ||||| |||||| Sbjct 59076 TCTTAACAAATATCTGCATA 59057 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 506759080223520