Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Eichhornia_20paniculata_20[genbank_20GCA_5F001647135.1_202016-05-02]
40,286 sequences; 571,388,321 total letters
Query= NC_004117.1
Length=158482
Score E
Sequences producing significant alignments: (Bits) Value
seq2385 109 6e-19
seq490 96.9 4e-15
>seq2385
Length=44452
Score = 109 bits (120), Expect = 6e-19
Identities = 161/228 (71%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 142957 GCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCT 143016
|||||| || | ||| | ||| | || | ||| || || || || |||||||| ||
Sbjct 34042 GCCTCCACGAAGACGGAGAACAAGGTGGAGTGTTGACTCCTTCTGGATGTTGTAGTCAGC 33983
Query 143017 CATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 143076
|| |||| || ||||||||||| |||||| |||||||||| ||||| || |||||
Sbjct 33982 CAGGGTGCGGCCATCCTCGAGTTGTTTGCCAGCAAAGATCAGACGCTGCTGGTCCGGAGG 33923
Query 143077 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTAC 143136
|| || || ||||| |||||| || | | || | || || | | || ||
Sbjct 33922 AATTCCCTCCTTGTCCTGAATTTTGGCCTTAACATTGTCGATTGTATCGGATGACTCGAC 33863
Query 143137 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184
|||| ||| | ||||| ||||||||||| ||||| || ||||||||
Sbjct 33862 CTCAAGAGTGATGGTCTTCCCGGTCAATGTCTTTACAAAGATTTGCAT 33815
>seq490
Length=81643
Score = 96.9 bits (106), Expect = 4e-15
Identities = 140/198 (71%), Gaps = 0/198 (0%)
Strand=Plus/Minus
Query 142987 TGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGTTTACC 143046
||| || || || || |||||||| || || || | || ||||| ||||| ||
Sbjct 58571 TGTTGACTCCTTCTGGATGTTGTAGTCAGCCAGGGTACGGCCATCCTCGAGCTGTTTGCC 58512
Query 143047 AGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTT 143106
|||| |||||||||||||||| || ||||| || || || ||||| |||||| ||
Sbjct 58511 AGCAAAGATCAGACGTTGCTGGTCCGGAGGGATACCCTCCTTGTCCTGAATTTTGGCCTT 58452
Query 143107 TAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGT 143166
| | || | || || | | || || |||| ||| | |||||||| ||||||||
Sbjct 58451 GACATTATCAATTGTATCAGATGACTCGACCTCAAGAGTGATGGTCTTGCCTGTCAATGT 58392
Query 143167 TTTTACGAATATTTGCAT 143184
|| ||||| ||||||||
Sbjct 58391 CTTGACGAAGATTTGCAT 58374
Score = 84.2 bits (92), Expect = 2e-11
Identities = 140/200 (70%), Gaps = 2/200 (1%)
Strand=Plus/Minus
Query 142987 TGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGC-TCGAGTCTTCGAGTTGTTTAC 143045
||||||||| || || ||||||||||| | |||| || | |||||||| || || |
Sbjct 59255 TGTAGATTCCTTCTGGATGTTGTAATCAGCAAGGGTGCGTCCA-TCTTCGAGCTGCTTCC 59197
Query 143046 CAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTT 143105
| ||| | || || | |||||| || || || ||||| || ||||| ||| ||| |
Sbjct 59196 CTGCAAATATGAGTCTTTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGAATCTTTGCCT 59137
Query 143106 TTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATG 143165
| | | || | ||||| | | ||| || |||| || | ||||| || ||||| |
Sbjct 59136 TGACGTTGTCAATGGTGTCTGACGATTCAACCTCAAGGGTAATAGTCTTACCAGTCAAGG 59077
Query 143166 TTTTTACGAATATTTGCATA 143185
| || || ||||| ||||||
Sbjct 59076 TCTTAACAAATATCTGCATA 59057
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 506759080223520
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |