Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Eichhornia_20paniculata_20[genbank_20GCA_5F001647135.1_202016-05-02]
40,286 sequences; 571,388,321 total letters
Query= NC_004156.2
Length=231621
Score E
Sequences producing significant alignments: (Bits) Value
seq2656 140 5e-28
seq2510 100 4e-16
seq32078 96.9 5e-15
seq7765 96.9 5e-15
>seq2656
Length=42395
Score = 140 bits (154), Expect = 5e-28
Identities = 561/864 (65%), Gaps = 36/864 (4%)
Strand=Plus/Minus
Query 125019 ATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTCGATCTG 125078
|| ||||| | ||||| ||||| || || || |||||| ||||| ||||| ||
Sbjct 42219 ATCTGGGAGTTCTACAAGAAGGCGGTAGCATCTTTCTGGACGACGGAAGAAGTCGACCTC 42160
Query 125079 TCCAAGGACCTGTACGATTGGGAGA-CTCGTTTGACTGAAACTGAGCGAGAGTTTATATC 125137
||| ||||| | | ||| | ||| | ||| || || || | || || ||
Sbjct 42159 TCCGGCGACCTCGGCCACTGGCTCAACTCCCT-GACGGACGACGATCGCCACTTCATCTC 42101
Query 125138 GCACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTCAACGACAATCTGTTGACACG 125197
||| | | |||||||| |||| |||||| || ||||| ||| || || | ||
Sbjct 42100 CCACGTCCTCGCCTTCTTCGCCGCCTCCGACGGCATCGTTCTCGAGAACCTCGCCGCCCG 42041
Query 125198 ATTCTCTCAAGAGTTGACCATTCCAGAGGTGTCGTGCTTT-TACGGATTCCAAATCATGA 125256
||| | || || | || |||| | || || || ||||| ||||| || |
Sbjct 42040 GTTCATGAACGACGTGCAGCTCCCGGAGGCG-CGCGCCTTCTACGGGTTCCAGATTGCCA 41982
Query 125257 TTGAGAACGTGCACTCGGAAATGTACTCTACACTGATTGACATGTACATTCGCGATCCGC 125316
| |||||| | ||||| || |||||||| || | || || || || |||
Sbjct 41981 TCGAGAACATCCACTCCGAGATGTACTCCCTCCTCCTCGAGTCTTATATCAAGGACCCGG 41922
Query 125317 AACGTAAACACATGC-TCTTTAACGCAATCGACACGGTGCCGTCTATACGTAAAAAGGCT 125375
| || || || || |||| || ||||| || || || | | | || |||||
Sbjct 41921 A-CGAGAAGACCCGCCTCTTCCGGGCGATCGAGACCGTCCCCTGCGTCGGCAAGAAGGCC 41863
Query 125376 CAATGGGTGATTCGGTGGATCGATGACGACAAGTCTTCGTACGCCGACAGACTGGTGGCA 125435
| |||| | | || |||||| | || | | ||| |||||||| | || || ||
Sbjct 41862 GACTGGGCGGTCCGCTGGATCCGTT-CGTC--GGATTCCTACGCCGAGCGCCTCGTTGCC 41806
Query 125436 TTCGCCGCCGTAGAGGGCATCTTCTTTTCGGG-TAGTTTTGCGGCCATCTTTTGGCTCAA 125494
|||||| ||| || ||||||||||| || || | || |||| | ||||| ||||||||
Sbjct 41805 TTCGCCTGCGTCGAAGGCATCTTCTTCTCCGGCTCCTTCTGCG-CAATCTTCTGGCTCAA 41747
Query 125495 GAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTATATCTCGAGACGAGGG 125554
|||||||||||||||||| || || ||| | |||||| | || ||||| ||||||||
Sbjct 41746 GAAGCGCGGACTCATGCCTGGCCTCACGTTCTCCAACGAGCTCATCTCTCGCGACGAGGG 41687
Query 125555 CCTACACTGTGACTT----TGCCAT-TCTACTG-TTTCGCAACTATCTGCGTCCCGAGTG 125608
||| ||||| ||||| |||| | ||||| | | | |||| | | |||||
Sbjct 41686 CCTCCACTGCGACTTCGCCTGCCTTCTCTACAGCCTCCTCAACAACAAGTTGCCCGA--- 41630
Query 125609 CAGATCCAGCGATGAAAAGGTCATCAACATTGTAACCGATGCCGTGAGGATAGAACAAGA 125668
|| || || || || ||| || | || || || || || | ||
Sbjct 41629 -------AGAGAGGATTAGATC-----CATCGTCAAAGAGGCGGTCGACATTGAGCGGGA 41582
Query 125669 GTTTCTAACCGAATCCCTACCGGT-CAGCATGATTGGCATGAACTGCAAGCTAATGTGCG 125727
||| | ||| | || || || || || | || |||||| | |||| ||| |
Sbjct 41581 GTTCGTCTGCGACGCTCTGCCTGTGGCGCTTG-TAGGGATGAACGGGGAGCTGATGAGTC 41523
Query 125728 AGTACATAGAGTTTGTGGCAGATCGTCTACTGTACGAG-TTGATTGGCCGCAAGATTTAC 125786
| ||||| ||||| || || ||||| || ||| | | | |||| || |||| || ||
Sbjct 41522 AATACATCGAGTTCGTAGCCGATCGGCTGCTGGGAGCGCTCGATT-GCAGCAAAATCTAT 41464
Query 125787 AACGCCAAGAATCCCTTTGATTTCATGACCAGCATATCACTAGAGGGTAAGACCAACTTT 125846
|| | ||||| || || | ||| |||||| || |||| |||||||||||
Sbjct 41463 GGCGTCCCAAATCCGTTCGACTGGATGGAGCTCATATCGCTGCAGGGGAAGACCAACTTC 41404
Query 125847 TTCGAGAAGAAGGTCAGCGAGTAC 125870
|||||||||| ||| ||||||||
Sbjct 41403 TTCGAGAAGAGGGTTGGCGAGTAC 41380
>seq2510
Length=43382
Score = 100 bits (110), Expect = 4e-16
Identities = 233/343 (68%), Gaps = 9/343 (3%)
Strand=Plus/Plus
Query 125234 CTTTTACGGATTCCAAATCATGATTGAGAACGTGCACTCGGAAATGTACTCTACACTGAT 125293
||| ||||| ||||| ||| || |||||| | ||||| || |||||||| || |
Sbjct 20904 CTTCTACGGCTTCCAGATCGCCATCGAGAACATCCACTCCGAGATGTACTCCCTCCTCCT 20963
Query 125294 TGACATGTACATTCGCGA-TCCGCAACGTAAACACATGC-TCTTTAACGCAATCGACACG 125351
|| | ||||| || |||| | | || | || |||| ||| ||||| ||
Sbjct 20964 CGAGACCTACATCAAGGACTCCG--AGGAGAAGTCGCGCCTCTTCCGCGCGATCGAGACC 21021
Query 125352 GTGCCGTCTATACGTAAAAAGGCTCAATGGGTGATTCGGTGGATCGATGACGACAAGTCT 125411
|| || | | | || ||||| | |||| | | || |||||| | || | |||
Sbjct 21022 GTCCCCTGCGTCGGAAAGAAGGCCGAGTGGGCGCTGCGTTGGATCCACT-CGTCGAGT-- 21078
Query 125412 TCGTACGCCGACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGG-TAG 125470
|| | ||||| | | || || || ||| ||| ||||| |||||||| || || |
Sbjct 21079 TCCTTTGCCGAGCGCATCGTCGCCTTTGCCTGCGTCGAGGGTATCTTCTTCTCCGGCTCC 21138
Query 125471 TTTTGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAA 125530
|| ||| ||||||| |||||||||||||| || |||||||| || || || | ||
Sbjct 21139 TTCTGCT-CCATCTTCTGGCTCAAGAAGCGAGGCCTCATGCCTGGGCTAACCTTCTCCAA 21197
Query 125531 CGAGTTTATATCTCGAGACGAGGGCCTACACTGTGACTTTGCC 125573
|||| | || || || |||||||| || ||||| ||||| |||
Sbjct 21198 CGAGCTCATCTCCCGTGACGAGGGACTCCACTGCGACTTCGCC 21240
>seq32078
Length=1569
Score = 96.9 bits (106), Expect = 5e-15
Identities = 110/145 (76%), Gaps = 2/145 (1%)
Strand=Plus/Plus
Query 125430 GTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGG-TAGTTTTGCGGCCATCTTTTG 125488
|| || || ||| ||| ||||| |||||||| || || | |||||| ||||||| ||
Sbjct 1003 GTCGCCTTTGCCTGCGTCGAGGGTATCTTCTTCTCCGGCTCCTTTTGCT-CCATCTTCTG 1061
Query 125489 GCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTATATCTCGAGA 125548
|||||||||||| || |||||||| || || || | |||||| | || || || ||
Sbjct 1062 GCTCAAGAAGCGGGGCCTCATGCCTGGGCTCACCTTCTCCAACGAGCTCATCTCCCGTGA 1121
Query 125549 CGAGGGCCTACACTGTGACTTTGCC 125573
|||||| || ||||| ||||| |||
Sbjct 1122 CGAGGGTCTCCACTGCGACTTCGCC 1146
>seq7765
Length=42474
Score = 96.9 bits (106), Expect = 5e-15
Identities = 110/145 (76%), Gaps = 2/145 (1%)
Strand=Plus/Minus
Query 125430 GTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGG-TAGTTTTGCGGCCATCTTTTG 125488
|| || || ||| ||| ||||| |||||||| || || | |||||| ||||||| ||
Sbjct 40180 GTCGCCTTTGCCTGCGTCGAGGGTATCTTCTTCTCCGGCTCCTTTTGCT-CCATCTTCTG 40122
Query 125489 GCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTATATCTCGAGA 125548
|||||||||||| || |||||||| || || || | |||||| | || || || ||
Sbjct 40121 GCTCAAGAAGCGGGGCCTCATGCCTGGGCTCACCTTCTCCAACGAGCTCATCTCCCGTGA 40062
Query 125549 CGAGGGCCTACACTGTGACTTTGCC 125573
|||||| || ||||| ||||| |||
Sbjct 40061 CGAGGGACTCCACTGCGACTTCGCC 40037
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 740686021113360
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |