Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eichhornia_20paniculata_20[genbank_20GCA_5F001647135.1_202016-05-02] 40,286 sequences; 571,388,321 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq2656 140 5e-28 seq2510 100 4e-16 seq32078 96.9 5e-15 seq7765 96.9 5e-15 >seq2656 Length=42395 Score = 140 bits (154), Expect = 5e-28 Identities = 561/864 (65%), Gaps = 36/864 (4%) Strand=Plus/Minus Query 125019 ATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTCGATCTG 125078 || ||||| | ||||| ||||| || || || |||||| ||||| ||||| || Sbjct 42219 ATCTGGGAGTTCTACAAGAAGGCGGTAGCATCTTTCTGGACGACGGAAGAAGTCGACCTC 42160 Query 125079 TCCAAGGACCTGTACGATTGGGAGA-CTCGTTTGACTGAAACTGAGCGAGAGTTTATATC 125137 ||| ||||| | | ||| | ||| | ||| || || || | || || || Sbjct 42159 TCCGGCGACCTCGGCCACTGGCTCAACTCCCT-GACGGACGACGATCGCCACTTCATCTC 42101 Query 125138 GCACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTCAACGACAATCTGTTGACACG 125197 ||| | | |||||||| |||| |||||| || ||||| ||| || || | || Sbjct 42100 CCACGTCCTCGCCTTCTTCGCCGCCTCCGACGGCATCGTTCTCGAGAACCTCGCCGCCCG 42041 Query 125198 ATTCTCTCAAGAGTTGACCATTCCAGAGGTGTCGTGCTTT-TACGGATTCCAAATCATGA 125256 ||| | || || | || |||| | || || || ||||| ||||| || | Sbjct 42040 GTTCATGAACGACGTGCAGCTCCCGGAGGCG-CGCGCCTTCTACGGGTTCCAGATTGCCA 41982 Query 125257 TTGAGAACGTGCACTCGGAAATGTACTCTACACTGATTGACATGTACATTCGCGATCCGC 125316 | |||||| | ||||| || |||||||| || | || || || || ||| Sbjct 41981 TCGAGAACATCCACTCCGAGATGTACTCCCTCCTCCTCGAGTCTTATATCAAGGACCCGG 41922 Query 125317 AACGTAAACACATGC-TCTTTAACGCAATCGACACGGTGCCGTCTATACGTAAAAAGGCT 125375 | || || || || |||| || ||||| || || || | | | || ||||| Sbjct 41921 A-CGAGAAGACCCGCCTCTTCCGGGCGATCGAGACCGTCCCCTGCGTCGGCAAGAAGGCC 41863 Query 125376 CAATGGGTGATTCGGTGGATCGATGACGACAAGTCTTCGTACGCCGACAGACTGGTGGCA 125435 | |||| | | || |||||| | || | | ||| |||||||| | || || || Sbjct 41862 GACTGGGCGGTCCGCTGGATCCGTT-CGTC--GGATTCCTACGCCGAGCGCCTCGTTGCC 41806 Query 125436 TTCGCCGCCGTAGAGGGCATCTTCTTTTCGGG-TAGTTTTGCGGCCATCTTTTGGCTCAA 125494 |||||| ||| || ||||||||||| || || | || |||| | ||||| |||||||| Sbjct 41805 TTCGCCTGCGTCGAAGGCATCTTCTTCTCCGGCTCCTTCTGCG-CAATCTTCTGGCTCAA 41747 Query 125495 GAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTATATCTCGAGACGAGGG 125554 |||||||||||||||||| || || ||| | |||||| | || ||||| |||||||| Sbjct 41746 GAAGCGCGGACTCATGCCTGGCCTCACGTTCTCCAACGAGCTCATCTCTCGCGACGAGGG 41687 Query 125555 CCTACACTGTGACTT----TGCCAT-TCTACTG-TTTCGCAACTATCTGCGTCCCGAGTG 125608 ||| ||||| ||||| |||| | ||||| | | | |||| | | ||||| Sbjct 41686 CCTCCACTGCGACTTCGCCTGCCTTCTCTACAGCCTCCTCAACAACAAGTTGCCCGA--- 41630 Query 125609 CAGATCCAGCGATGAAAAGGTCATCAACATTGTAACCGATGCCGTGAGGATAGAACAAGA 125668 || || || || || ||| || | || || || || || | || Sbjct 41629 -------AGAGAGGATTAGATC-----CATCGTCAAAGAGGCGGTCGACATTGAGCGGGA 41582 Query 125669 GTTTCTAACCGAATCCCTACCGGT-CAGCATGATTGGCATGAACTGCAAGCTAATGTGCG 125727 ||| | ||| | || || || || || | || |||||| | |||| ||| | Sbjct 41581 GTTCGTCTGCGACGCTCTGCCTGTGGCGCTTG-TAGGGATGAACGGGGAGCTGATGAGTC 41523 Query 125728 AGTACATAGAGTTTGTGGCAGATCGTCTACTGTACGAG-TTGATTGGCCGCAAGATTTAC 125786 | ||||| ||||| || || ||||| || ||| | | | |||| || |||| || || Sbjct 41522 AATACATCGAGTTCGTAGCCGATCGGCTGCTGGGAGCGCTCGATT-GCAGCAAAATCTAT 41464 Query 125787 AACGCCAAGAATCCCTTTGATTTCATGACCAGCATATCACTAGAGGGTAAGACCAACTTT 125846 || | ||||| || || | ||| |||||| || |||| ||||||||||| Sbjct 41463 GGCGTCCCAAATCCGTTCGACTGGATGGAGCTCATATCGCTGCAGGGGAAGACCAACTTC 41404 Query 125847 TTCGAGAAGAAGGTCAGCGAGTAC 125870 |||||||||| ||| |||||||| Sbjct 41403 TTCGAGAAGAGGGTTGGCGAGTAC 41380 >seq2510 Length=43382 Score = 100 bits (110), Expect = 4e-16 Identities = 233/343 (68%), Gaps = 9/343 (3%) Strand=Plus/Plus Query 125234 CTTTTACGGATTCCAAATCATGATTGAGAACGTGCACTCGGAAATGTACTCTACACTGAT 125293 ||| ||||| ||||| ||| || |||||| | ||||| || |||||||| || | Sbjct 20904 CTTCTACGGCTTCCAGATCGCCATCGAGAACATCCACTCCGAGATGTACTCCCTCCTCCT 20963 Query 125294 TGACATGTACATTCGCGA-TCCGCAACGTAAACACATGC-TCTTTAACGCAATCGACACG 125351 || | ||||| || |||| | | || | || |||| ||| ||||| || Sbjct 20964 CGAGACCTACATCAAGGACTCCG--AGGAGAAGTCGCGCCTCTTCCGCGCGATCGAGACC 21021 Query 125352 GTGCCGTCTATACGTAAAAAGGCTCAATGGGTGATTCGGTGGATCGATGACGACAAGTCT 125411 || || | | | || ||||| | |||| | | || |||||| | || | ||| Sbjct 21022 GTCCCCTGCGTCGGAAAGAAGGCCGAGTGGGCGCTGCGTTGGATCCACT-CGTCGAGT-- 21078 Query 125412 TCGTACGCCGACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGG-TAG 125470 || | ||||| | | || || || ||| ||| ||||| |||||||| || || | Sbjct 21079 TCCTTTGCCGAGCGCATCGTCGCCTTTGCCTGCGTCGAGGGTATCTTCTTCTCCGGCTCC 21138 Query 125471 TTTTGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAA 125530 || ||| ||||||| |||||||||||||| || |||||||| || || || | || Sbjct 21139 TTCTGCT-CCATCTTCTGGCTCAAGAAGCGAGGCCTCATGCCTGGGCTAACCTTCTCCAA 21197 Query 125531 CGAGTTTATATCTCGAGACGAGGGCCTACACTGTGACTTTGCC 125573 |||| | || || || |||||||| || ||||| ||||| ||| Sbjct 21198 CGAGCTCATCTCCCGTGACGAGGGACTCCACTGCGACTTCGCC 21240 >seq32078 Length=1569 Score = 96.9 bits (106), Expect = 5e-15 Identities = 110/145 (76%), Gaps = 2/145 (1%) Strand=Plus/Plus Query 125430 GTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGG-TAGTTTTGCGGCCATCTTTTG 125488 || || || ||| ||| ||||| |||||||| || || | |||||| ||||||| || Sbjct 1003 GTCGCCTTTGCCTGCGTCGAGGGTATCTTCTTCTCCGGCTCCTTTTGCT-CCATCTTCTG 1061 Query 125489 GCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTATATCTCGAGA 125548 |||||||||||| || |||||||| || || || | |||||| | || || || || Sbjct 1062 GCTCAAGAAGCGGGGCCTCATGCCTGGGCTCACCTTCTCCAACGAGCTCATCTCCCGTGA 1121 Query 125549 CGAGGGCCTACACTGTGACTTTGCC 125573 |||||| || ||||| ||||| ||| Sbjct 1122 CGAGGGTCTCCACTGCGACTTCGCC 1146 >seq7765 Length=42474 Score = 96.9 bits (106), Expect = 5e-15 Identities = 110/145 (76%), Gaps = 2/145 (1%) Strand=Plus/Minus Query 125430 GTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGG-TAGTTTTGCGGCCATCTTTTG 125488 || || || ||| ||| ||||| |||||||| || || | |||||| ||||||| || Sbjct 40180 GTCGCCTTTGCCTGCGTCGAGGGTATCTTCTTCTCCGGCTCCTTTTGCT-CCATCTTCTG 40122 Query 125489 GCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTATATCTCGAGA 125548 |||||||||||| || |||||||| || || || | |||||| | || || || || Sbjct 40121 GCTCAAGAAGCGGGGCCTCATGCCTGGGCTCACCTTCTCCAACGAGCTCATCTCCCGTGA 40062 Query 125549 CGAGGGCCTACACTGTGACTTTGCC 125573 |||||| || ||||| ||||| ||| Sbjct 40061 CGAGGGACTCCACTGCGACTTCGCC 40037 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 740686021113360