Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eichhornia_20paniculata_20[genbank_20GCA_5F001647135.1_202016-05-02] 40,286 sequences; 571,388,321 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq2385 156 1e-32 seq220 152 1e-31 seq490 145 2e-29 seq5010 125 2e-23 seq263 120 7e-22 seq564 111 4e-19 >seq2385 Length=44452 Score = 156 bits (172), Expect = 1e-32 Identities = 163/214 (76%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 104347 AAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTC 104406 ||| || ||||| | || || || || |||||||| ||||| | ||| || | ||||| Sbjct 35090 AAGAACCAGATGCAGGGTCGACTCCTTTTGAATATTGTAGTCTGCTAGGGTGCGCCCGTC 35031 Query 104407 TTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATC 104466 || || || || |||||||| || |||||||| || || ||||| || || ||||| || Sbjct 35030 CTCAAGCTGCTTCCCAGCAAAGATGAGCCTCTGCTGGTCCGGAGGAATGCCCTCTTTGTC 34971 Query 104467 CTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGT 104526 |||||||||||| || || || || | ||| || || ||| ||||| || ||||| || Sbjct 34970 CTGAATCTTTGCCTTGACGTTGTCAATGGTGTCTGAAGATTCAACCTCAAGGGTAATGGT 34911 Query 104527 CTTACCAGTAAGTGTTTTTACAAATATCTGCATT 104560 ||| ||||| || || || ||||| ||||||||| Sbjct 34910 CTTGCCAGTCAGGGTCTTGACAAAGATCTGCATT 34877 Score = 143 bits (158), Expect = 6e-29 Identities = 159/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 104348 AGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCT 104407 || || ||||| | |||||||| ||||| || || || |||| || |||| || ||| Sbjct 34633 AGGACGAGATGAAGCGTAGATTCCTTCTGGATGTTGTAATCAGCGAGGGTTCGCCCATCT 34574 Query 104408 TCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCC 104467 || | ||||| || ||||| || |||||||| ||||| ||||| || || || |||||| Sbjct 34573 TCCAACTGTTTCCCTGCAAAGATAAGCCTCTGCTGATCTGGAGGAATGCCCTCCTTATCC 34514 Query 104468 TGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTC 104527 ||||||||||| || ||||| || | ||| || | || ||||| || || || || Sbjct 34513 TGAATCTTTGCCTTGACATTGTCGATGGTGTCCGATGACTCAACCTCAAGGGTGATCGTT 34454 Query 104528 TTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || ||||| || || || ||||| |||||||| Sbjct 34453 TTGCCAGTCAGCGTCTTCACAAAGATCTGCAT 34422 >seq220 Length=196394 Score = 152 bits (168), Expect = 1e-31 Identities = 174/231 (75%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 ||||| || || ||||| || || | || | |||||||| |||||||| || |||||| Sbjct 148997 ATTCCACCCCTAAGCCTCAGCACCAAGTGGAGGGTAGATTCCTTCTGAATGTTGTAGTCA 149056 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 | ||||| | || || || || || || ||||| || || |||||||| ||||| || Sbjct 149057 GCAAGAGTGCGCCCATCCTCGAGCTGCTTACCAGCGAAGATGAGCCTCTGCTGATCCGGG 149116 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGT-TC 104508 || || ||||| || ||||||||||| || |||||||| || | ||| || || | || Sbjct 149117 GGAATGCCTTCCTTGTCCTGAATCTTCGCCTTTACATTGTCGATGGTGTC-TGAGCTCTC 149175 Query 104509 TACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 ||||| || || || ||||| ||||| || || || ||||| |||||||| Sbjct 149176 AACCTCGAGGGTGATCGTCTTGCCAGTGAGGGTCTTGACAAAGATCTGCAT 149226 Score = 111 bits (122), Expect = 4e-19 Identities = 155/215 (72%), Gaps = 2/215 (1%) Strand=Plus/Plus Query 104347 AAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTC 104406 ||| || ||||| | || || ||||||||||| |||||||| | | ||| | || || Sbjct 148786 AAGCACCAGATGGAGAGTGGACTCTTTCTGAATGTTATAGTCTGCCAAAGTGCGCCCATC 148845 Query 104407 TTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATC 104466 || || || || ||||| || || || ||||| || || || || || || || || || Sbjct 148846 CTCCAGCTGCTTCCCAGCGAAGATGAGTCTCTGCTGGTCCGGCGGGATCCCCTCCTTGTC 148905 Query 104467 CTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGT-TCTACCTCTAGTGTAATAG 104525 || ||||| || || ||||| || | || || || | || ||||| || ||||| | Sbjct 148906 TTGGATCTTCGCCTTCACATTATCAATAGTGTC-AGAGCTCTCCACCTCCAGGGTAATGG 148964 Query 104526 TCTTACCAGTAAGTGTTTTTACAAATATCTGCATT 104560 |||||||||| || || || || || || |||||| Sbjct 148965 TCTTACCAGTGAGGGTCTTCACGAAGATTTGCATT 148999 >seq490 Length=81643 Score = 145 bits (160), Expect = 2e-29 Identities = 160/213 (75%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 104347 AAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTC 104406 ||| || ||||| | || || || || |||||||| ||||| | ||| || | || || Sbjct 59726 AAGAACCAGATGCAGGGTTGACTCCTTTTGAATATTGTAGTCTGCTAGGGTGCGCCCATC 59667 Query 104407 TTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATC 104466 || || || || || ||||| || ||||||||||| || ||||| || || ||||| || Sbjct 59666 CTCAAGCTGCTTCCCCGCAAAGATGAGCCTCTGTTGGTCTGGAGGAATGCCCTCTTTGTC 59607 Query 104467 CTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGT 104526 |||||| ||||| || ||||| || | ||| || || ||| ||||| || || || || Sbjct 59606 CTGAATTTTTGCCTTGACATTGTCAATGGTGTCTGAAGATTCAACCTCAAGGGTTATGGT 59547 Query 104527 CTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 ||| ||||| || || || || ||||||||||| Sbjct 59546 CTTGCCAGTCAGAGTCTTGACGAATATCTGCAT 59514 Score = 138 bits (152), Expect = 3e-27 Identities = 151/198 (76%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 |||||||| || ||||| ||||| |||| ||||| | || || || || || || || Sbjct 59026 GTAGATTCCTTTTGAATGTTATAATCAGCAAGAGTACGTCCATCCTCAAGCTGCTTCCCT 58967 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 ||||| || ||||| || || ||||| || || || ||||||||||| ||||| ||||| Sbjct 58966 GCAAAGATGAGCCTTTGCTGGTCAGGGGGGATGCCCTCTTTATCCTGGATCTTCGCTTTG 58907 Query 104483 ACATTTTCTACGGTATCGCTAGG-TTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGT 104541 ||||| || | ||| || | ||| || ||||| || || |||||||| || || | ||| Sbjct 58906 ACATTGTCAATGGTGTC-CGAGGACTCAACCTCAAGGGTGATAGTCTTGCCCGTCAATGT 58848 Query 104542 TTTTACAAATATCTGCAT 104559 || ||||| |||||||| Sbjct 58847 CTTCACAAAGATCTGCAT 58830 Score = 134 bits (148), Expect = 3e-26 Identities = 157/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 104348 AGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCT 104407 || || || || | ||||||||| ||||| || || || |||| || || | || ||| Sbjct 59269 AGGACAAGGTGGAGTGTAGATTCCTTCTGGATGTTGTAATCAGCAAGGGTGCGTCCATCT 59210 Query 104408 TCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCC 104467 || || || || || ||||| || || || || || || || || || || || || ||| Sbjct 59209 TCGAGCTGCTTCCCTGCAAATATGAGTCTTTGCTGGTCCGGGGGAATGCCCTCCTTGTCC 59150 Query 104468 TGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTC 104527 ||||||||||| || || || || | ||| || | ||| ||||| || ||||||||| Sbjct 59149 TGAATCTTTGCCTTGACGTTGTCAATGGTGTCTGACGATTCAACCTCAAGGGTAATAGTC 59090 Query 104528 TTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 |||||||| | || || |||||||||||||| Sbjct 59089 TTACCAGTCAAGGTCTTAACAAATATCTGCAT 59058 >seq5010 Length=51657 Score = 125 bits (138), Expect = 2e-23 Identities = 148/198 (75%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || ||||||||||| || ||||| | || || | ||||| || || || || || Sbjct 38488 GTGGACTCTTTCTGAATGTTGTAGTCCGCAAGGGTGCGGCCGTCCTCGAGCTGCTTGCCG 38429 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 |||||||| |||||||| || || || || || ||||| |||||||||||||| || || Sbjct 38428 GCAAAAATAAGCCTCTGCTGGTCCGGGGGGATACCTTCCTTATCCTGAATCTTGGCCTTC 38369 Query 104483 ACATTTTCTACGGTATCGCTAGGT-TCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGT 104541 || || || | ||| ||| || | || ||||| | ||||| ||||| || || || || Sbjct 38368 ACGTTATCAATGGTGTCG-GAGCTCTCGACCTCCAAGGTAATCGTCTTGCCTGTCAGAGT 38310 Query 104542 TTTTACAAATATCTGCAT 104559 || || || |||||||| Sbjct 38309 CTTCACGAAGATCTGCAT 38292 Score = 116 bits (128), Expect = 9e-21 Identities = 146/198 (74%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || |||||||||||||| ||||| || | || || | || || || || || || ||| Sbjct 38716 GTGGATTCTTTCTGAATGTTATAATCGGCAAGGGTACGGCCATCCTCAAGCTGCTTGCCA 38657 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 || || || |||||||| ||||| || || || || || || ||||| || || || || Sbjct 38656 GCGAAGATGAGCCTCTGCTGATCCGGGGGAATCCCCTCCTTGTCCTGGATTTTAGCCTTA 38597 Query 104483 ACATTTTCTACGGTATCGCTAGGT-TCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGT 104541 || || || | |||||| | || | || || || || || || || || ||||||||||| Sbjct 38596 ACGTTGTCAATGGTATC-CGAGCTCTCGACTTCAAGGGTGATGGTTTTGCCAGTAAGTGT 38538 Query 104542 TTTTACAAATATCTGCAT 104559 || || || |||||||| Sbjct 38537 CTTGACGAAGATCTGCAT 38520 >seq263 Length=97214 Score = 120 bits (132), Expect = 7e-22 Identities = 147/198 (74%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || ||||| ||||||||||| ||||| | | || | || || || || || |||||| Sbjct 77881 GTGGATTCCTTCTGAATATTGTAGTCGGCCAAGGTGCGGCCATCCTCAAGCTGCTTTCCA 77940 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 || || || |||||||| ||||| || || || || || || ||||| || || ||||| Sbjct 77941 GCGAAGATGAGCCTCTGCTGATCCGGGGGAATACCCTCCTTGTCCTGGATTTTGGCTTTA 78000 Query 104483 ACATTTTCTACGGTATCGCTAGGT-TCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGT 104541 ||||| || | ||| || | || | || ||||| || || || ||||| ||||| || || Sbjct 78001 ACATTGTCAATGGTGTC-CGAGCTCTCGACCTCAAGGGTTATGGTCTTGCCAGTGAGCGT 78059 Query 104542 TTTTACAAATATCTGCAT 104559 || || || |||||||| Sbjct 78060 CTTGACGAAGATCTGCAT 78077 >seq564 Length=78751 Score = 111 bits (122), Expect = 4e-19 Identities = 145/201 (72%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || || ||||| || || ||||||| || || | ||||| || ||||| ||||| Sbjct 11257 GTGGACTCCTTCTGGATGTTGTAGTCAGCAAGGGTGCGTCCGTCCTCGAGTTGCTTTCCG 11316 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 || || || || | ||| || || || || || ||||| || ||||||||||| || || Sbjct 11317 GCGAATATGAGACGCTGCTGGTCCGGCGGGATCCCTTCCTTGTCCTGAATCTTCGCCTTC 11376 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 || || || | ||| || | || ||||| || || || ||||| || || || ||| Sbjct 11377 ACGTTGTCGATGGTGTCCGACGACTCCACCTCGAGGGTGATCGTCTTCCCCGTCAGCGTT 11436 Query 104543 TTTACAAATATCTGCATTTTG 104563 || || || |||||||| ||| Sbjct 11437 TTCACGAAGATCTGCATCTTG 11457 Score = 111 bits (122), Expect = 4e-19 Identities = 156/218 (72%), Gaps = 1/218 (0%) Strand=Plus/Plus Query 104348 AGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCT 104407 || || || || | ||| || || ||||| || || ||||||| || || | ||||| Sbjct 22081 AGGACGAGGTGGAGTGTGGACTCCTTCTGGATGTTGTAGTCAGCAAGGGTGCGTCCGTCC 22140 Query 104408 TCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCC 104467 || ||||| ||||| || || || || | ||| || || || || || ||||| || ||| Sbjct 22141 TCGAGTTGCTTTCCCGCGAATATGAGACGCTGCTGGTCCGGCGGGATCCCTTCCTTGTCC 22200 Query 104468 TGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTC 104527 |||||||| || || || || || | ||| || | || ||||| || || || ||| Sbjct 22201 TGAATCTTCGCCTTCACGTTGTCGATGGTGTCCGACGACTCCACCTCGAGGGTGATCGTC 22260 Query 104528 TTACCAGTAAGTGTTTTTACAAATATCTGCAT-TTTGT 104564 || || || || || || || || |||||||| ||||| Sbjct 22261 TTCCCCGTCAGGGTCTTCACGAAGATCTGCATCTTTGT 22298 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1150804089164488