Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Eichhornia_20paniculata_20[genbank_20GCA_5F001647135.1_202016-05-02]
40,286 sequences; 571,388,321 total letters
Query= NC_005337.1
Length=134431
Score E
Sequences producing significant alignments: (Bits) Value
seq1637 138 1e-27
seq722 111 1e-19
>seq1637
Length=52524
Score = 138 bits (152), Expect = 1e-27
Identities = 175/236 (74%), Gaps = 6/236 (3%)
Strand=Plus/Minus
Query 5501 ACGCCCGTGGACCCGAATCCGCCTGCGCCTCTTTCCGTATCGTCCAGGCACGCCACCTCT 5560
|| || ||||| |||||||| || |||| || ||||||||||||| || |||||
Sbjct 48085 ACTCCGGTGGATCCGAATCCTCCGACGCCCCTCGCCGTATCGTCCAGATCGGCGACCTCG 48026
Query 5561 TCCACATCGGG-GAACGCAGCGCGCTCGCAGATCAGCTGCGCTATTCGGTCGCCCGTCTT 5619
| | || || | | | | | ||| | ||||| ||||| ||||||||||| | |||
Sbjct 48025 ACGGCCTCCGGCGTAATTATC-CTCTCCAATATCAGTTGCGCGATTCGGTCGCCGGCCTT 47967
Query 5620 TACCTCGAAATCGTTGTGGCCGAA--GTTGAACAGCACCACGCCCACGTTGCCGCGGTAG 5677
|||||||| || || |||| |||||||||||| ||||| || || ||||||
Sbjct 47966 CACCTCGAAGTCCGCGT--CCGAGTGGTTGAACAGCACGACGCCGACCGGTCCCCGGTAG 47909
Query 5678 TCGGCGTCTATCACGCCCGCGCCCACGTCGATGAAGTGCTTGACCGCCAGGCCGGA 5733
|||||||| ||||||||||| ||||||||||| ||||||| |||||| || ||
Sbjct 47908 TCGGCGTCAATCACGCCCGCTCCCACGTCGATCGAGTGCTTCCACGCCAGCCCCGA 47853
>seq722
Length=72705
Score = 111 bits (122), Expect = 1e-19
Identities = 169/236 (72%), Gaps = 6/236 (3%)
Strand=Plus/Minus
Query 5501 ACGCCCGTGGACCCGAATCCGCCTGCGCCTCTTTCCGTATCGTCCAGGCACGCCACCTCT 5560
||||| || || || ||||| || ||||||| |||| |||||||| | |||||
Sbjct 68656 ACGCCAGTCGATCCAAATCCTCCGCCGCCTCTCGCCGTCTCGTCCAGATCGTCGACCTCA 68597
Query 5561 TCCACATCGGGGAACGCAGCGCGCTCGCAG-ATCAGCTGCGCTATTCGGTCGCCCGTCTT 5619
| || || || | | ||| ||| ||||||||||| || ||||| || | |||
Sbjct 68596 GCGACCTCCGGCGTCATGATCCTCTC-CAGTATCAGCTGCGCAATCCGGTCCCCGGCCTT 68538
Query 5620 TACCTCGAAATCGTTGTGGCCGAA--GTTGAACAGCACCACGCCCACGTTGCCGCGGTAG 5677
|||||||| || || |||| |||||||||||| || || || ||| | |||
Sbjct 68537 CACCTCGAAGTCCAGGT--CCGAGTGGTTGAACAGCACGACACCGACCGGGCCCCTGTAA 68480
Query 5678 TCGGCGTCTATCACGCCCGCGCCCACGTCGATGAAGTGCTTGACCGCCAGGCCGGA 5733
|||||||| |||||||| ||||||||| |||| ||||||| |||||| || ||
Sbjct 68479 TCGGCGTCGATCACGCCGGCGCCCACGCCGATCGAGTGCTTCCACGCCAGCCCCGA 68424
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 429843249471632
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |