Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eichhornia_20paniculata_20[genbank_20GCA_5F001647135.1_202016-05-02] 40,286 sequences; 571,388,321 total letters Query= NC_005337.1 Length=134431 Score E Sequences producing significant alignments: (Bits) Value seq1637 138 1e-27 seq722 111 1e-19 >seq1637 Length=52524 Score = 138 bits (152), Expect = 1e-27 Identities = 175/236 (74%), Gaps = 6/236 (3%) Strand=Plus/Minus Query 5501 ACGCCCGTGGACCCGAATCCGCCTGCGCCTCTTTCCGTATCGTCCAGGCACGCCACCTCT 5560 || || ||||| |||||||| || |||| || ||||||||||||| || ||||| Sbjct 48085 ACTCCGGTGGATCCGAATCCTCCGACGCCCCTCGCCGTATCGTCCAGATCGGCGACCTCG 48026 Query 5561 TCCACATCGGG-GAACGCAGCGCGCTCGCAGATCAGCTGCGCTATTCGGTCGCCCGTCTT 5619 | | || || | | | | | ||| | ||||| ||||| ||||||||||| | ||| Sbjct 48025 ACGGCCTCCGGCGTAATTATC-CTCTCCAATATCAGTTGCGCGATTCGGTCGCCGGCCTT 47967 Query 5620 TACCTCGAAATCGTTGTGGCCGAA--GTTGAACAGCACCACGCCCACGTTGCCGCGGTAG 5677 |||||||| || || |||| |||||||||||| ||||| || || |||||| Sbjct 47966 CACCTCGAAGTCCGCGT--CCGAGTGGTTGAACAGCACGACGCCGACCGGTCCCCGGTAG 47909 Query 5678 TCGGCGTCTATCACGCCCGCGCCCACGTCGATGAAGTGCTTGACCGCCAGGCCGGA 5733 |||||||| ||||||||||| ||||||||||| ||||||| |||||| || || Sbjct 47908 TCGGCGTCAATCACGCCCGCTCCCACGTCGATCGAGTGCTTCCACGCCAGCCCCGA 47853 >seq722 Length=72705 Score = 111 bits (122), Expect = 1e-19 Identities = 169/236 (72%), Gaps = 6/236 (3%) Strand=Plus/Minus Query 5501 ACGCCCGTGGACCCGAATCCGCCTGCGCCTCTTTCCGTATCGTCCAGGCACGCCACCTCT 5560 ||||| || || || ||||| || ||||||| |||| |||||||| | ||||| Sbjct 68656 ACGCCAGTCGATCCAAATCCTCCGCCGCCTCTCGCCGTCTCGTCCAGATCGTCGACCTCA 68597 Query 5561 TCCACATCGGGGAACGCAGCGCGCTCGCAG-ATCAGCTGCGCTATTCGGTCGCCCGTCTT 5619 | || || || | | ||| ||| ||||||||||| || ||||| || | ||| Sbjct 68596 GCGACCTCCGGCGTCATGATCCTCTC-CAGTATCAGCTGCGCAATCCGGTCCCCGGCCTT 68538 Query 5620 TACCTCGAAATCGTTGTGGCCGAA--GTTGAACAGCACCACGCCCACGTTGCCGCGGTAG 5677 |||||||| || || |||| |||||||||||| || || || ||| | ||| Sbjct 68537 CACCTCGAAGTCCAGGT--CCGAGTGGTTGAACAGCACGACACCGACCGGGCCCCTGTAA 68480 Query 5678 TCGGCGTCTATCACGCCCGCGCCCACGTCGATGAAGTGCTTGACCGCCAGGCCGGA 5733 |||||||| |||||||| ||||||||| |||| ||||||| |||||| || || Sbjct 68479 TCGGCGTCGATCACGCCGGCGCCCACGCCGATCGAGTGCTTCCACGCCAGCCCCGA 68424 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429843249471632