Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eichhornia_20paniculata_20[genbank_20GCA_5F001647135.1_202016-05-02] 40,286 sequences; 571,388,321 total letters Query= NC_005839.2 Length=131680 Score E Sequences producing significant alignments: (Bits) Value seq410 100 2e-16 seq220 87.8 2e-12 >seq410 Length=85275 Score = 100 bits (110), Expect = 2e-16 Identities = 147/206 (71%), Gaps = 4/206 (2%) Strand=Plus/Minus Query 48524 TGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGC 48583 ||||| ||| |||||| || ||||||||||| || | | || ||||||| |||||| Sbjct 46571 TGAAGAGTGGACTCCTTCTGGATGTTGTAATCGGCGAGTGTGCGTCCGTCCTCGAGCTGC 46512 Query 48584 TTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTC 48643 || ||| || | || | ||||| || ||| ||| | | ||||||||| || ||| Sbjct 46511 TTGCCGGCGAAGATGAGCCGCTGTTGGTCCGGCGGTATTCCCTCCTTGTCCTGGATCTTC 46452 Query 48644 TGCTTGA--TAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGG 48701 ||| | | | || ||||| || | |||||| ||| | || || || || |||| Sbjct 46451 GCCTTCACGTTGTCG--ATGGTGTCCGATGACTCCACCTCAAGGGTGATCGTCTTCCCGG 46394 Query 48702 TGAGAGTTTTCACAAAAATCTGCATC 48727 ||||||| ||||| || ||||||||| Sbjct 46393 TGAGAGTCTTCACGAAGATCTGCATC 46368 >seq220 Length=196394 Score = 87.8 bits (96), Expect = 2e-12 Identities = 136/192 (71%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 48536 TCCTTTTGAATGTTGTAATCAGCCA-ATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTA 48594 ||||| ||||||||||| ||||| | | || ||| | ||||| ||||||||||| || | Sbjct 149036 TCCTTCTGAATGTTGTAGTCAGCAAGAGTG-CGCCCATCCTCGAGCTGCTTACCAGCGAA 149094 Query 48595 AATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGATAGA 48654 || | | |||||||||| || | | |||||||||| ||| ||| ||| | | Sbjct 149095 GATGAGCCTCTGCTGATCCGGGGGAATGCCTTCCTTGTCCTGAATCTTCGCCTTTACATT 149154 Query 48655 CGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCAC 48714 | ||||| || | ||| ||||| || || || || || ||||| || || || Sbjct 149155 GTCGATGGTGTCTGAGCTCTCAACCTCGAGGGTGATCGTCTTGCCAGTGAGGGTCTTGAC 149214 Query 48715 AAAAATCTGCAT 48726 ||| |||||||| Sbjct 149215 AAAGATCTGCAT 149226 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421044371716286