Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eichhornia_20paniculata_20[genbank_20GCA_5F001647135.1_202016-05-02] 40,286 sequences; 571,388,321 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq32078 105 8e-18 seq3117 91.5 2e-13 >seq32078 Length=1569 Score = 105 bits (116), Expect = 8e-18 Identities = 232/342 (68%), Gaps = 8/342 (2%) Strand=Plus/Minus Query 33304 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGT 33363 || ||||| |||||||| ||||||||||| | || || |||||||| || ||||| Sbjct 1148 CAGGCGAAGTCGCAGTGGAGACCCTCGTCACGGGAGATGAGCTCGTTGGAGAAGGTGAGC 1089 Query 33364 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAG 33423 || ||||| ||||| ||||| || ||||| || ||||| || || || || |||||| Sbjct 1088 CCAGGCATGAGGCCCCGCTTCTTGAGCCAGAAGATGGAGCAAAAGGAGCCGGAGAAGAAG 1029 Query 33424 ATTCCTTCTACTGCA-GCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCT-GTC--ATG 33479 || || || || ||| |||||||| | | | ||| || | || ||| | | || Sbjct 1028 ATACCCTCGAC-GCAGGCAAAGGCGACGATGCGCTCGGCAAA---GGAGCTCGACGAGTG 973 Query 33480 TATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATT 33539 ||||| ||||||| |||||||||||| || || || | ||||| || || Sbjct 972 GATCCAACGCAGAGCCCAGTCGGCCTTCTTTCCGACGCAGGGGACGGTTTCGATCGCGCG 913 Query 33540 AAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACAT 33599 ||||| || || | || || | || || |||| | || ||||| Sbjct 912 GAAGAGGCGCGACTTCTCCTCGGAGTCCTTGATGTAGGTCTCGAGGAGGAGGGAGTACAT 853 Query 33600 TTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAA 33641 || || || ||||| || ||||| ||||| || |||||||| Sbjct 852 CTCGGAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAGAA 811 >seq3117 Length=39173 Score = 91.5 bits (100), Expect = 2e-13 Identities = 106/143 (74%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 63138 TCGAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACACATCAACGAC 63197 || || |||||||||||| || ||||||| ||| ||||| || || | ||| ||| Sbjct 13840 TCAAATTCGTCTCCCCAACAATCAGCCAATCCTGGAGCTTCATTAGGGCAAAACAATGAC 13899 Query 63198 CACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAAT 63257 || | || | ||||| || | || ||| ||||| || ||||||||||| || | |||| Sbjct 13900 CATTGACCATTATCCTGAACCCTTTGCATGAAGAGGTCGGGAATCCAAAGTGCAAAAAAT 13959 Query 63258 AGATCTCTGGTTCTATGTTCCTC 63280 ||||| || | |||||| || || Sbjct 13960 AGATCCCTTGCTCTATGCTCTTC 13982 Score = 91.5 bits (100), Expect = 2e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 63611 AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATT 63670 ||| || ||||| || ||||| || ||||| || || ||||| || ||| | |||| Sbjct 14891 AGTGCCTGCATTGAACAAGGTCGGCGAAGCATGAGTGAACCAACGTTGAGACATCAGATG 14950 Query 63671 GTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAA 63730 ||| || || || || || || || || || ||||| || | || | ||| || Sbjct 14951 GTATGTTCTGATGGCAGACTCAATGTCATCTTTGTGGATTCCAACAGATACTCTCATCAA 15010 Query 63731 CATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAA 63790 ||||||||| ||||| || || | ||| | |||||||| || || |||| | Sbjct 15011 CATGTGCTGCGGTCTCTCCACAACCTTTCCAGAAACTTTCAACAGATATGACCTTTCGAG 15070 Query 63791 AGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 63838 ||||||||| ||||| |||| || |||||| || || ||||| || Sbjct 15071 AGTTTTAAATCCAAAGTAGTCATAGTCAAAGTCACGGTCATAAATTAT 15118 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622633499363760