Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Eichhornia_20paniculata_20[genbank_20GCA_5F001647135.1_202016-05-02]
40,286 sequences; 571,388,321 total letters
Query= NC_006998.1
Length=194711
Score E
Sequences producing significant alignments: (Bits) Value
seq32078 105 8e-18
seq3117 91.5 2e-13
>seq32078
Length=1569
Score = 105 bits (116), Expect = 8e-18
Identities = 232/342 (68%), Gaps = 8/342 (2%)
Strand=Plus/Minus
Query 33304 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGT 33363
|| ||||| |||||||| ||||||||||| | || || |||||||| || |||||
Sbjct 1148 CAGGCGAAGTCGCAGTGGAGACCCTCGTCACGGGAGATGAGCTCGTTGGAGAAGGTGAGC 1089
Query 33364 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAG 33423
|| ||||| ||||| ||||| || ||||| || ||||| || || || || ||||||
Sbjct 1088 CCAGGCATGAGGCCCCGCTTCTTGAGCCAGAAGATGGAGCAAAAGGAGCCGGAGAAGAAG 1029
Query 33424 ATTCCTTCTACTGCA-GCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCT-GTC--ATG 33479
|| || || || ||| |||||||| | | | ||| || | || ||| | | ||
Sbjct 1028 ATACCCTCGAC-GCAGGCAAAGGCGACGATGCGCTCGGCAAA---GGAGCTCGACGAGTG 973
Query 33480 TATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATT 33539
||||| ||||||| |||||||||||| || || || | ||||| || ||
Sbjct 972 GATCCAACGCAGAGCCCAGTCGGCCTTCTTTCCGACGCAGGGGACGGTTTCGATCGCGCG 913
Query 33540 AAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACAT 33599
||||| || || | || || | || || |||| | || |||||
Sbjct 912 GAAGAGGCGCGACTTCTCCTCGGAGTCCTTGATGTAGGTCTCGAGGAGGAGGGAGTACAT 853
Query 33600 TTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAA 33641
|| || || ||||| || ||||| ||||| || ||||||||
Sbjct 852 CTCGGAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAGAA 811
>seq3117
Length=39173
Score = 91.5 bits (100), Expect = 2e-13
Identities = 106/143 (74%), Gaps = 0/143 (0%)
Strand=Plus/Plus
Query 63138 TCGAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACACATCAACGAC 63197
|| || |||||||||||| || ||||||| ||| ||||| || || | ||| |||
Sbjct 13840 TCAAATTCGTCTCCCCAACAATCAGCCAATCCTGGAGCTTCATTAGGGCAAAACAATGAC 13899
Query 63198 CACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAAT 63257
|| | || | ||||| || | || ||| ||||| || ||||||||||| || | ||||
Sbjct 13900 CATTGACCATTATCCTGAACCCTTTGCATGAAGAGGTCGGGAATCCAAAGTGCAAAAAAT 13959
Query 63258 AGATCTCTGGTTCTATGTTCCTC 63280
||||| || | |||||| || ||
Sbjct 13960 AGATCCCTTGCTCTATGCTCTTC 13982
Score = 91.5 bits (100), Expect = 2e-13
Identities = 157/228 (69%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 63611 AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATT 63670
||| || ||||| || ||||| || ||||| || || ||||| || ||| | ||||
Sbjct 14891 AGTGCCTGCATTGAACAAGGTCGGCGAAGCATGAGTGAACCAACGTTGAGACATCAGATG 14950
Query 63671 GTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAA 63730
||| || || || || || || || || || ||||| || | || | ||| ||
Sbjct 14951 GTATGTTCTGATGGCAGACTCAATGTCATCTTTGTGGATTCCAACAGATACTCTCATCAA 15010
Query 63731 CATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAA 63790
||||||||| ||||| || || | ||| | |||||||| || || |||| |
Sbjct 15011 CATGTGCTGCGGTCTCTCCACAACCTTTCCAGAAACTTTCAACAGATATGACCTTTCGAG 15070
Query 63791 AGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 63838
||||||||| ||||| |||| || |||||| || || ||||| ||
Sbjct 15071 AGTTTTAAATCCAAAGTAGTCATAGTCAAAGTCACGGTCATAAATTAT 15118
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 622633499363760
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |