Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eichhornia_20paniculata_20[genbank_20GCA_5F001647135.1_202016-05-02] 40,286 sequences; 571,388,321 total letters Query= NC_007383.1 Length=134394 Score E Sequences producing significant alignments: (Bits) Value seq2385 93.3 4e-14 seq220 87.8 2e-12 seq5010 86.0 5e-12 >seq2385 Length=44452 Score = 93.3 bits (102), Expect = 4e-14 Identities = 143/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | ||||| || || | ||||| ||| |||| ||| | || || ||| | Sbjct 34422 ATGCAGATCTTTGTGAAGACGCTGACTGGCAAAACGATCACCCTTGAGGTTGAGTCATCG 34481 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||||||||| | ||||| ||||||| || || || ||||| ||||| ||||| Sbjct 34482 GACACCATCGACAATGTCAAGGCAAAGATTCAGGATAAGGAGGGCATTCCTCCAGATCAG 34541 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||||| || || | | || || || | ||||||| ||| | || ||||| ||| Sbjct 34542 CAGAGGCTTATCTTTGCAGGGAAACAGTTGGAAGATGGGCGAACCCTCGCTGATTACAAC 34601 Query 24171 ATTCAAAAAGAATCTACAATTCAT 24194 || || || |||||||| ||||| Sbjct 34602 ATCCAGAAGGAATCTACGCTTCAT 34625 >seq220 Length=196394 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | ||||| || || | ||||| || |||| ||| |||| || ||| | Sbjct 149226 ATGCAGATCTTTGTCAAGACCCTCACTGGCAAGACGATCACCCTCGAGGTTGAGAGCTCA 149167 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||||||||| | || || |||||| ||||| |||||||| || || ||||| Sbjct 149166 GACACCATCGACAATGTAAAGGCGAAGATTCAGGACAAGGAAGGCATTCCCCCGGATCAG 149107 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||||| || || | || || ||||| ||||| |||| | | | || || ||| Sbjct 149106 CAGAGGCTCATCTTCGCTGGTAAGCAGCTCGAGGATGGGCGCACTCTTGCTGACTACAAC 149047 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGGA 24218 ||||| || |||||||| | || || ||| | || | || || ||| Sbjct 149046 ATTCAGAAGGAATCTACCCTCCACTTGGTGCTGAGGCTTAGGGGTGGA 148999 >seq5010 Length=51657 Score = 86.0 bits (94), Expect = 5e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | || || || ||| | ||||| ||| | || ||| | ||||||||| | Sbjct 38520 ATGCAGATCTTCGTCAAGACACTTACTGGCAAAACCATCACCCTTGAAGTCGAGAGCTCG 38579 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 || ||||| || | || || || || ||||| || || || || || ||||| Sbjct 38580 GATACCATTGACAACGTTAAGGCTAAAATCCAGGACAAGGAGGGGATTCCCCCGGATCAG 38639 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||||| || || | || |||||||| || || |||| | | | | | |||||||||| Sbjct 38640 CAGAGGCTCATCTTCGCTGGCAAGCAGCTTGAGGATGGCCGTACCCTTGCCGATTATAAC 38699 Query 24171 ATTCAAAAAGAATCTAC 24187 ||||| |||||||| || Sbjct 38700 ATTCAGAAAGAATCCAC 38716 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429724907604330