Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Eichhornia_20paniculata_20[genbank_20GCA_5F001647135.1_202016-05-02]
40,286 sequences; 571,388,321 total letters
Query= NC_008168.1
Length=104710
Score E
Sequences producing significant alignments: (Bits) Value
seq33548 131 1e-25
seq8641 131 1e-25
seq490 93.3 3e-14
seq1740 89.7 3e-13
seq1444 87.8 1e-12
seq564 87.8 1e-12
>seq33548
Length=1432
Score = 131 bits (144), Expect = 1e-25
Identities = 86/95 (91%), Gaps = 5/95 (5%)
Strand=Plus/Plus
Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956
||||||||||||||||||||||||||||| ||||||||| |||| || ||||||||
Sbjct 78 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTGGATAGTAGACAGGGACAGTGGGAATCTCGT 137
Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991
|||||| ||||||||||||||||||||||||||||
Sbjct 138 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 172
>seq8641
Length=56469
Score = 131 bits (144), Expect = 1e-25
Identities = 86/95 (91%), Gaps = 5/95 (5%)
Strand=Plus/Plus
Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956
||||||||||||||||||||||||||||| ||||||||| |||| || ||||||||
Sbjct 35085 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTGGATAGTAGACAGGGACAGTGGGAATCTCGT 35144
Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991
|||||| ||||||||||||||||||||||||||||
Sbjct 35145 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 35179
Score = 96.9 bits (106), Expect = 2e-15
Identities = 67/76 (88%), Gaps = 0/76 (0%)
Strand=Plus/Plus
Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006
|||||| |||||||| ||||||| ||||||||| |||||||||||||||||||||||| |
Sbjct 37093 CTCTCTTTTCAAAGTCCTTTTCATCTTTCCCTCGCGGTACTTGTTCGCTATCGGTCTCTC 37152
Query 20007 GGTAATATTTAGCCTT 20022
| |||||||||||
Sbjct 37153 GCCCGTATTTAGCCTT 37168
>seq490
Length=81643
Score = 93.3 bits (102), Expect = 3e-14
Identities = 143/204 (70%), Gaps = 0/204 (0%)
Strand=Plus/Minus
Query 38115 TGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCGTCTAATTGT 38174
|| || ||| |||||||||||| ||||| |||| || || | || || |||||
Sbjct 58804 TGGAGCGTGGACTCCTTTTGAATGTTGTAGTCAGCCAGGGTGCGACCATCCTCCAATTGC 58745
Query 38175 TTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATAATTTTT 38234
|| || ||||| || || || || || || | ||||| || || |||||| || ||
Sbjct 58744 TTGCCTGCAAAGATCAGACGCTGCTGGTCCGGGGGGATTCCCTCCTTGTCCTGGATCTTG 58685
Query 38235 TGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTTACCCGTC 38294
||| ||||| | | ||||||| | ||||| || | || || || || || |||
Sbjct 58684 GCCTTGACATTGTCAATAGTATCTGAAGACTCAACCTCAAGAGTGATTGTCTTGCCTGTC 58625
Query 38295 AAGGTTTTCACGAATATCTGCATG 38318
||||| ||||| || |||||||||
Sbjct 58624 AAGGTCTTCACAAAGATCTGCATG 58601
Score = 87.8 bits (96), Expect = 1e-12
Identities = 134/191 (70%), Gaps = 0/191 (0%)
Strand=Plus/Minus
Query 38127 TCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAAT 38186
||||| || || |||||||||| | ||| | || || | || || || ||||||
Sbjct 59248 TCCTTCTGGATGTTGTAATCAGCAAGGGTGCGTCCATCTTCGAGCTGCTTCCCTGCAAAT 59189
Query 38187 ATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTC 38246
|| || | ||| || || | ||| | ||| || |||||| ||| ||| ||| || ||
Sbjct 59188 ATGAGTCTTTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGAATCTTTGCCTTGACGTTG 59129
Query 38247 TGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACG 38306
| | || ||| |||||| || | |||||||| ||||| |||||||| || ||
Sbjct 59128 TCAATGGTGTCTGACGATTCAACCTCAAGGGTAATAGTCTTACCAGTCAAGGTCTTAACA 59069
Query 38307 AATATCTGCAT 38317
|||||||||||
Sbjct 59068 AATATCTGCAT 59058
Score = 84.2 bits (92), Expect = 1e-11
Identities = 144/209 (69%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 38109 ACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCGTCT 38168
|||| ||| || || |||||||||||||||||| || | | || | || ||
Sbjct 59722 ACCAGATGCAGGGTTGACTCCTTTTGAATATTGTAGTCTGCTAGGGTGCGCCCATCCTCA 59663
Query 38169 AATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATA 38228
| || || || ||||| || || | ||||| || | || | ||| ||||||||| |
Sbjct 59662 AGCTGCTTCCCCGCAAAGATGAGCCTCTGTTGGTCTGGAGGAATGCCCTCTTTGTCCTGA 59603
Query 38229 ATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTTA 38288
|||||| ||| ||||| | | || ||| | |||||| || | || || || ||
Sbjct 59602 ATTTTTGCCTTGACATTGTCAATGGTGTCTGAAGATTCAACCTCAAGGGTTATGGTCTTG 59543
Query 38289 CCCGTCAAGGTTTTCACGAATATCTGCAT 38317
|| |||| || || ||||||||||||||
Sbjct 59542 CCAGTCAGAGTCTTGACGAATATCTGCAT 59514
>seq1740
Length=51228
Score = 89.7 bits (98), Expect = 3e-13
Identities = 73/89 (82%), Gaps = 5/89 (6%)
Strand=Plus/Minus
Query 25908 GTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGG-----GTAATCTCGTTAATCC 25962
|||||||||| |||||||||| | ||||||||| | || | ||||| ||||||||
Sbjct 47555 GTTCCCTTGGGTGTGGTTTCGTTGGATAGTAGACAAGGACATTCGGAATCTTGTTAATCC 47496
Query 25963 TTTCATGCGCGTCACTAATTAGATGACGA 25991
|||||| || ||||||||||||||||||
Sbjct 47495 ATTCATGTGCATCACTAATTAGATGACGA 47467
>seq1444
Length=57038
Score = 87.8 bits (96), Expect = 1e-12
Identities = 54/58 (93%), Gaps = 0/58 (0%)
Strand=Plus/Minus
Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTC 20004
|||||| |||||||| ||||||| ||||||||| ||||||||||||||||||||||||
Sbjct 2550 CTCTCTTTTCAAAGTCCTTTTCATCTTTCCCTCGCGGTACTTGTTCGCTATCGGTCTC 2493
>seq564
Length=78751
Score = 87.8 bits (96), Expect = 1e-12
Identities = 145/207 (70%), Gaps = 2/207 (1%)
Strand=Plus/Plus
Query 38115 TGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCGTCTAATTGT 38174
|| || ||| |||||| || || ||||| |||| | ||| |||| || | |||
Sbjct 11251 TGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCAAGGGTGCGTCCGTCCTCGAGTTGC 11310
Query 38175 TTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATAATTTTT 38234
|||||||| ||||| || || || || || | |||| ||||| |||||| ||| ||
Sbjct 11311 TTTCCGGCGAATATGAGACGCTGCTGGTCCGGCGGGATCCCTTCCTTGTCCTGAATCTTC 11370
Query 38235 TGCTTCACATTCTGGACAGTATCTCCACTT-TCAACTTCTAATGTAATAGTTTTACCCGT 38293
|||||| || | || || || | || || || || | || || || || |||||
Sbjct 11371 GCCTTCACGTTGTCGATGGTGTC-CGACGACTCCACCTCGAGGGTGATCGTCTTCCCCGT 11429
Query 38294 CAAGGTTTTCACGAATATCTGCATGTT 38320
|| ||||||||||| |||||||| ||
Sbjct 11430 CAGCGTTTTCACGAAGATCTGCATCTT 11456
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 334782745739666
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |