Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eichhornia_20paniculata_20[genbank_20GCA_5F001647135.1_202016-05-02] 40,286 sequences; 571,388,321 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq33548 131 1e-25 seq8641 131 1e-25 seq490 93.3 3e-14 seq1740 89.7 3e-13 seq1444 87.8 1e-12 seq564 87.8 1e-12 >seq33548 Length=1432 Score = 131 bits (144), Expect = 1e-25 Identities = 86/95 (91%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||||||||||||||||||||||||||| ||||||||| |||| || |||||||| Sbjct 78 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTGGATAGTAGACAGGGACAGTGGGAATCTCGT 137 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 138 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 172 >seq8641 Length=56469 Score = 131 bits (144), Expect = 1e-25 Identities = 86/95 (91%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||||||||||||||||||||||||||| ||||||||| |||| || |||||||| Sbjct 35085 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTGGATAGTAGACAGGGACAGTGGGAATCTCGT 35144 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 35145 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 35179 Score = 96.9 bits (106), Expect = 2e-15 Identities = 67/76 (88%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||| |||||||| ||||||| ||||||||| |||||||||||||||||||||||| | Sbjct 37093 CTCTCTTTTCAAAGTCCTTTTCATCTTTCCCTCGCGGTACTTGTTCGCTATCGGTCTCTC 37152 Query 20007 GGTAATATTTAGCCTT 20022 | ||||||||||| Sbjct 37153 GCCCGTATTTAGCCTT 37168 >seq490 Length=81643 Score = 93.3 bits (102), Expect = 3e-14 Identities = 143/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 38115 TGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCGTCTAATTGT 38174 || || ||| |||||||||||| ||||| |||| || || | || || ||||| Sbjct 58804 TGGAGCGTGGACTCCTTTTGAATGTTGTAGTCAGCCAGGGTGCGACCATCCTCCAATTGC 58745 Query 38175 TTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATAATTTTT 38234 || || ||||| || || || || || || | ||||| || || |||||| || || Sbjct 58744 TTGCCTGCAAAGATCAGACGCTGCTGGTCCGGGGGGATTCCCTCCTTGTCCTGGATCTTG 58685 Query 38235 TGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTTACCCGTC 38294 ||| ||||| | | ||||||| | ||||| || | || || || || || ||| Sbjct 58684 GCCTTGACATTGTCAATAGTATCTGAAGACTCAACCTCAAGAGTGATTGTCTTGCCTGTC 58625 Query 38295 AAGGTTTTCACGAATATCTGCATG 38318 ||||| ||||| || ||||||||| Sbjct 58624 AAGGTCTTCACAAAGATCTGCATG 58601 Score = 87.8 bits (96), Expect = 1e-12 Identities = 134/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 38127 TCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAAT 38186 ||||| || || |||||||||| | ||| | || || | || || || |||||| Sbjct 59248 TCCTTCTGGATGTTGTAATCAGCAAGGGTGCGTCCATCTTCGAGCTGCTTCCCTGCAAAT 59189 Query 38187 ATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTC 38246 || || | ||| || || | ||| | ||| || |||||| ||| ||| ||| || || Sbjct 59188 ATGAGTCTTTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGAATCTTTGCCTTGACGTTG 59129 Query 38247 TGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACG 38306 | | || ||| |||||| || | |||||||| ||||| |||||||| || || Sbjct 59128 TCAATGGTGTCTGACGATTCAACCTCAAGGGTAATAGTCTTACCAGTCAAGGTCTTAACA 59069 Query 38307 AATATCTGCAT 38317 ||||||||||| Sbjct 59068 AATATCTGCAT 59058 Score = 84.2 bits (92), Expect = 1e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 38109 ACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCGTCT 38168 |||| ||| || || |||||||||||||||||| || | | || | || || Sbjct 59722 ACCAGATGCAGGGTTGACTCCTTTTGAATATTGTAGTCTGCTAGGGTGCGCCCATCCTCA 59663 Query 38169 AATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATA 38228 | || || || ||||| || || | ||||| || | || | ||| ||||||||| | Sbjct 59662 AGCTGCTTCCCCGCAAAGATGAGCCTCTGTTGGTCTGGAGGAATGCCCTCTTTGTCCTGA 59603 Query 38229 ATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTTA 38288 |||||| ||| ||||| | | || ||| | |||||| || | || || || || Sbjct 59602 ATTTTTGCCTTGACATTGTCAATGGTGTCTGAAGATTCAACCTCAAGGGTTATGGTCTTG 59543 Query 38289 CCCGTCAAGGTTTTCACGAATATCTGCAT 38317 || |||| || || |||||||||||||| Sbjct 59542 CCAGTCAGAGTCTTGACGAATATCTGCAT 59514 >seq1740 Length=51228 Score = 89.7 bits (98), Expect = 3e-13 Identities = 73/89 (82%), Gaps = 5/89 (6%) Strand=Plus/Minus Query 25908 GTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGG-----GTAATCTCGTTAATCC 25962 |||||||||| |||||||||| | ||||||||| | || | ||||| |||||||| Sbjct 47555 GTTCCCTTGGGTGTGGTTTCGTTGGATAGTAGACAAGGACATTCGGAATCTTGTTAATCC 47496 Query 25963 TTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| || |||||||||||||||||| Sbjct 47495 ATTCATGTGCATCACTAATTAGATGACGA 47467 >seq1444 Length=57038 Score = 87.8 bits (96), Expect = 1e-12 Identities = 54/58 (93%), Gaps = 0/58 (0%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTC 20004 |||||| |||||||| ||||||| ||||||||| |||||||||||||||||||||||| Sbjct 2550 CTCTCTTTTCAAAGTCCTTTTCATCTTTCCCTCGCGGTACTTGTTCGCTATCGGTCTC 2493 >seq564 Length=78751 Score = 87.8 bits (96), Expect = 1e-12 Identities = 145/207 (70%), Gaps = 2/207 (1%) Strand=Plus/Plus Query 38115 TGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCGTCTAATTGT 38174 || || ||| |||||| || || ||||| |||| | ||| |||| || | ||| Sbjct 11251 TGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCAAGGGTGCGTCCGTCCTCGAGTTGC 11310 Query 38175 TTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATAATTTTT 38234 |||||||| ||||| || || || || || | |||| ||||| |||||| ||| || Sbjct 11311 TTTCCGGCGAATATGAGACGCTGCTGGTCCGGCGGGATCCCTTCCTTGTCCTGAATCTTC 11370 Query 38235 TGCTTCACATTCTGGACAGTATCTCCACTT-TCAACTTCTAATGTAATAGTTTTACCCGT 38293 |||||| || | || || || | || || || || | || || || || ||||| Sbjct 11371 GCCTTCACGTTGTCGATGGTGTC-CGACGACTCCACCTCGAGGGTGATCGTCTTCCCCGT 11429 Query 38294 CAAGGTTTTCACGAATATCTGCATGTT 38320 || ||||||||||| |||||||| || Sbjct 11430 CAGCGTTTTCACGAAGATCTGCATCTT 11456 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334782745739666