Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eichhornia_20paniculata_20[genbank_20GCA_5F001647135.1_202016-05-02] 40,286 sequences; 571,388,321 total letters Query= NC_009011.2 Length=131331 Score E Sequences producing significant alignments: (Bits) Value seq2385 120 3e-22 seq490 116 3e-21 seq220 114 1e-20 seq410 87.8 2e-12 seq5010 86.0 5e-12 seq564 86.0 5e-12 >seq2385 Length=44452 Score = 120 bits (132), Expect = 3e-22 Identities = 165/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 114156 CCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATC-GCT 114214 || ||||| || | | ||| | ||| | || || || |||||||| ||||| || ||| Sbjct 35104 CCACCACGGAGGCGAAGAACCAGATGCAGGGTCGACTCCTTTTGAATATTGTAGTCTGCT 35045 Query 114215 CATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGG 114274 | || || || ||||| || || ||||| ||||||| | ||| ||||||||||| Sbjct 35044 -AGGGTGCGCCCGTCCTCAAGCTGCTTCCCAGCAAAGATGAGCCTCTGCTGGTCCGGAGG 34986 Query 114275 AATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGAC 114334 |||||| |||||||| ||||||| || | | |||| |||||| | ||||| || Sbjct 34985 AATGCCCTCTTTGTCCTGAATCTTTGCCTTGACGTTGTCAATGGTGTCTGAAGATTCAAC 34926 Query 114335 GTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || | ||| | || ||||| ||||| || || ||||| |||||||| Sbjct 34925 CTCAAGGGTAATGGTCTTGCCAGTCAGGGTCTTGACAAAGATCTGCAT 34878 Score = 109 bits (120), Expect = 5e-19 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| ||||| || | | || | ||| | ||||||||| || || ||||||||||| Sbjct 34651 ATACCACCACGAAGGCGGAGGACGAGATGAAGCGTAGATTCCTTCTGGATGTTGTAATCA 34592 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 | || || |||||| | ||||| || || |||| || | ||| || || ||| Sbjct 34591 GCGAGGGTTCGCCCATCTTCCAACTGTTTCCCTGCAAAGATAAGCCTCTGCTGATCTGGA 34532 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 |||||||| || || || ||||||| || | | || | |||||| | || || Sbjct 34531 GGAATGCCCTCCTTATCCTGAATCTTTGCCTTGACATTGTCGATGGTGTCCGATGACTCA 34472 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || || | ||| | ||||||||| ||||| || || ||||| |||||||| Sbjct 34471 ACCTCAAGGGTGATCGTTTTGCCAGTCAGCGTCTTCACAAAGATCTGCAT 34422 Score = 105 bits (116), Expect = 6e-18 Identities = 142/198 (72%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 114185 CGTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACC 114244 ||||||||| ||||| ||||||||||| || ||| || ||| ||||| || || || Sbjct 34847 CGTAGATTCCTTTTGGATGTTGTAATCAGCCAAAGTGCGTCCATCCTCAAGCTGCTTCCC 34788 Query 114245 AGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTT 114304 || | ||||| | || |||||||| || ||||| || ||||| ||||| || Sbjct 34787 TGCAAAAATGAGCCTTTGCTGGTCCGGGGGGATGCCCTCCTTGTCTTGGATCTTGGCCTT 34728 Query 114305 TAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGT 114364 | | || | |||||| | || || || || | ||| | ||||||||| ||||| || Sbjct 34727 AACATTGTCGATGGTGTCCGATGACTCAACCTCAAGGGTGATCGTTTTGCCAGTCAGCGT 34668 Query 114365 TTTTACAAAAATCTGCAT 114382 || ||||| |||||||| Sbjct 34667 CTTCACAAAGATCTGCAT 34650 Score = 95.1 bits (104), Expect = 1e-14 Identities = 161/231 (70%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 || || ||||| || | | ||| | || | || || || || || |||||||| || Sbjct 34044 ATGCCTCCACGAAGACGGAGAACAAGGTGGAGTGTTGACTCCTTCTGGATGTTGTAGTCA 33985 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 || || || ||| || |||||||| ||||| |||| |||||||| ||||||||| Sbjct 33984 GCCAGGGTGCGGCCATCCTCGAGTTGTTTGCCAGCAAAGATCAGACGCTGCTGGTCCGGA 33925 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGC-TGTTCAACGGTGTCGGTGGATTC 114331 ||||| || || ||||| ||| ||| | ||| | | || | || |||| || || Sbjct 33924 GGAATTCCCTCCTTGTCCTGAAT-TTTGGCCTTAACATTGTCGATTGTATCGGATGACTC 33866 Query 114332 GACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 ||| || | || | || || ||||||| || |||||||| || ||||| Sbjct 33865 GACCTCAAGAGTGATGGTCTTCCCGGTCAATGTCTTTACAAAGATTTGCAT 33815 >seq490 Length=81643 Score = 116 bits (128), Expect = 3e-21 Identities = 164/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 114156 CCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATC-GCT 114214 || ||||| || | | ||| | ||| | || || || |||||||| ||||| || ||| Sbjct 59740 CCACCACGGAGGCGAAGAACCAGATGCAGGGTTGACTCCTTTTGAATATTGTAGTCTGCT 59681 Query 114215 CATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGG 114274 | || || ||| ||||| || || || || ||||||| | ||||||||| ||||| Sbjct 59680 -AGGGTGCGCCCATCCTCAAGCTGCTTCCCCGCAAAGATGAGCCTCTGTTGGTCTGGAGG 59622 Query 114275 AATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGAC 114334 |||||| |||||||| ||| ||| || | | |||| |||||| | ||||| || Sbjct 59621 AATGCCCTCTTTGTCCTGAATTTTTGCCTTGACATTGTCAATGGTGTCTGAAGATTCAAC 59562 Query 114335 GTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || | ||| | || ||||| |||||||| || || || |||||||| Sbjct 59561 CTCAAGGGTTATGGTCTTGCCAGTCAGAGTCTTGACGAATATCTGCAT 59514 Score = 111 bits (122), Expect = 1e-19 Identities = 163/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| ||||| || | | || | || | ||||||||| ||||||||||| ||||| Sbjct 59059 ATACCACCACGGAGACGGAGGACAAGGTGGAGCGTAGATTCCTTTTGAATGTTATAATCA 59000 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 | |||||| ||| ||||| || || || || ||||||| | || ||||| || Sbjct 58999 GCAAGAGTACGTCCATCCTCAAGCTGCTTCCCTGCAAAGATGAGCCTTTGCTGGTCAGGG 58940 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 || ||||| ||||| || ||||| ||| | | |||| |||||| | ||| || Sbjct 58939 GGGATGCCCTCTTTATCCTGGATCTTCGCTTTGACATTGTCAATGGTGTCCGAGGACTCA 58880 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 114383 || || | ||| | || ||||| |||| || || ||||| ||||||||| Sbjct 58879 ACCTCAAGGGTGATAGTCTTGCCCGTCAATGTCTTCACAAAGATCTGCATG 58829 Score = 95.1 bits (104), Expect = 1e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| ||||| || | | || | || | |||||||| || || ||||||||||| Sbjct 59287 ATACCACCACGGAGGCGGAGGACAAGGTGGAGTGTAGATTCCTTCTGGATGTTGTAATCA 59228 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 | || || |||||| || || || || || | ||||| | || |||||||| Sbjct 59227 GCAAGGGTGCGTCCATCTTCGAGCTGCTTCCCTGCAAATATGAGTCTTTGCTGGTCCGGG 59168 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 |||||||| || ||||| ||||||| || | | |||| |||||| | ||||| Sbjct 59167 GGAATGCCCTCCTTGTCCTGAATCTTTGCCTTGACGTTGTCAATGGTGTCTGACGATTCA 59108 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || || | ||| | || || || |||| || || ||||| |||||||| Sbjct 59107 ACCTCAAGGGTAATAGTCTTACCAGTCAAGGTCTTAACAAATATCTGCAT 59058 >seq220 Length=196394 Score = 114 bits (126), Expect = 1e-20 Identities = 156/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 114165 AGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGA 114224 || |||| || || || | |||||||| || ||||||||||| || | ||| || Sbjct 149009 AGCCTCAGCACCAAGTGGAGGGTAGATTCCTTCTGAATGTTGTAGTCAGCAAGAGTGCGC 149068 Query 114225 GAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCT 114284 ||| || || || ||||||||| ||||||| | ||| || ||||| ||||||||||| Sbjct 149069 CCATCCTCGAGCTGCTTACCAGCGAAGATGAGCCTCTGCTGATCCGGGGGAATGCCTTCC 149128 Query 114285 TTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTC 114344 ||||| |||||| |||| | || | |||||| | | || || || | ||| Sbjct 149129 TTGTCCTGAATCTTCGCCTTTACATTGTCGATGGTGTCTGAGCTCTCAACCTCGAGGGTG 149188 Query 114345 ACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 | ||| ||||| || || || || ||||| |||||||| Sbjct 149189 ATCGTCTTGCCAGTGAGGGTCTTGACAAAGATCTGCAT 149226 >seq410 Length=85275 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 114155 ACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCT 114214 ||||||||| || | | || | || | || || || || || |||||||||||| Sbjct 46596 ACCGCCACGAAGACGAAGGACGAGGTGAAGAGTGGACTCCTTCTGGATGTTGTAATCGGC 46537 Query 114215 CATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGG 114274 | || || || || || || || || ||| ||||||| |||||||||||||| || Sbjct 46536 GAGTGTGCGTCCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGCCGCTGTTGGTCCGGCGG 46477 Query 114275 AATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGAC 114334 || || || ||||| ||||| || | | || | |||||| | || || || Sbjct 46476 TATTCCCTCCTTGTCCTGGATCTTCGCCTTCACGTTGTCGATGGTGTCCGATGACTCCAC 46417 Query 114335 GTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || | ||| | ||| || ||||| ||||| || || || |||||||| Sbjct 46416 CTCAAGGGTGATCGTCTTCCCGGTGAGAGTCTTCACGAAGATCTGCAT 46369 >seq5010 Length=51657 Score = 86.0 bits (94), Expect = 5e-12 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 || |||||||| || | | || | || | || || ||||| ||||||||||| || Sbjct 38521 ATGCCGCCACGGAGGCGGAGCACCAGGTGGAGGGTGGACTCTTTCTGAATGTTGTAGTCC 38462 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 | || || || || || || || || || | || || | ||| |||||||| Sbjct 38461 GCAAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCAAAAATAAGCCTCTGCTGGTCCGGG 38402 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 || || ||||| || || |||||| || | | |||| |||||||| | ||| Sbjct 38401 GGGATACCTTCCTTATCCTGAATCTTGGCCTTCACGTTATCAATGGTGTCGGAGCTCTCG 38342 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || |||| ||| | ||| ||||| |||||||| || || || |||||||| Sbjct 38341 ACCTCCAAGGTAATCGTCTTGCCTGTCAGAGTCTTCACGAAGATCTGCAT 38292 >seq564 Length=78751 Score = 86.0 bits (94), Expect = 5e-12 Identities = 112/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 114228 TCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTG 114287 || || ||||| || || ||| | ||||||||||| |||||||| || || ||||| ||| Sbjct 11299 TCCTCGAGTTGCTTTCCGGCGAATATGAGACGCTGCTGGTCCGGCGGGATCCCTTCCTTG 11358 Query 114288 TCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACC 114347 || |||||| || | | || | |||||| | || || || || | ||| | | Sbjct 11359 TCCTGAATCTTCGCCTTCACGTTGTCGATGGTGTCCGACGACTCCACCTCGAGGGTGATC 11418 Query 114348 GTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || || || ||||| ||||| || || |||||||| Sbjct 11419 GTCTTCCCCGTCAGCGTTTTCACGAAGATCTGCAT 11453 Score = 82.4 bits (90), Expect = 6e-11 Identities = 111/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 114228 TCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTG 114287 || || ||||| || || ||| | ||||||||||| |||||||| || || ||||| ||| Sbjct 22138 TCCTCGAGTTGCTTTCCCGCGAATATGAGACGCTGCTGGTCCGGCGGGATCCCTTCCTTG 22197 Query 114288 TCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACC 114347 || |||||| || | | || | |||||| | || || || || | ||| | | Sbjct 22198 TCCTGAATCTTCGCCTTCACGTTGTCGATGGTGTCCGACGACTCCACCTCGAGGGTGATC 22257 Query 114348 GTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || || || ||||| || || || || |||||||| Sbjct 22258 GTCTTCCCCGTCAGGGTCTTCACGAAGATCTGCAT 22292 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419928120049032