Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eichhornia_20paniculata_20[genbank_20GCA_5F001647135.1_202016-05-02] 40,286 sequences; 571,388,321 total letters Query= NC_009503.1 Length=124121 Score E Sequences producing significant alignments: (Bits) Value seq490 93.3 3e-14 seq2468 82.4 6e-11 >seq490 Length=81643 Score = 93.3 bits (102), Expect = 3e-14 Identities = 154/221 (70%), Gaps = 6/221 (3%) Strand=Plus/Minus Query 33910 AGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCCAATTGTCGC 33969 ||||| ||||| || || |||||| |||||| ||||||||||| || |||| || Sbjct 58819 AGCCGAAGCACAAGGTGGAGCGTGGACTCCTTTTGAATGTTGTAGTCAGCCAGGGTGCGA 58760 Query 33970 TCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGCACGCTCTCT 34029 | || |||||||||||||| ||||| ||||| |||||||| ||| || | | ||| Sbjct 58759 CCATCCTCCAATTGCTTGCCTGCAAAGATCAGACGCTGCTGGTCCGGGGGGATTCCCTCC 58700 Query 34030 TTGTCCATAATTTTTTGCTT---AATGGAACTCACACTATCAGTAGATTCGCATTCGACC 34086 |||||| || || ||| | || | | | |||| | ||| || || | Sbjct 58699 TTGTCCTGGATCTTGGCCTTGACATTGTCA---ATAGTATCTGAAGACTCAACCTCAAGA 58643 Query 34087 GTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCAT 34127 || ||||| || || || | || ||||||||||| ||||| Sbjct 58642 GTGATTGTCTTGCCTGTCAAGGTCTTCACAAAGATCTGCAT 58602 >seq2468 Length=52418 Score = 82.4 bits (90), Expect = 6e-11 Identities = 96/127 (76%), Gaps = 2/127 (2%) Strand=Plus/Minus Query 33910 AGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCCAATTGT-CG 33968 || || || || ||||| || ||| ||||||||| |||||||| || || || || || Sbjct 935 AGGCGAAGGACGAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGC-AAGGGTACG 877 Query 33969 CTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGCACGCTCTC 34028 | |||| || | ||||||||||| || || || |||||||| ||| ||| | || ||| Sbjct 876 CCCGTCTTCAAGCTGCTTGCCGGCGAAGATGAGCCGCTGCTGGTCCGGCGGGATGCCCTC 817 Query 34029 TTTGTCC 34035 |||||| Sbjct 816 CTTGTCC 810 Score = 82.4 bits (90), Expect = 6e-11 Identities = 96/127 (76%), Gaps = 2/127 (2%) Strand=Plus/Minus Query 33910 AGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCCAATTGT-CG 33968 || || || || ||||| || ||| ||||||||| |||||||| || || || || || Sbjct 10134 AGGCGAAGGACGAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGC-AAGGGTGCG 10076 Query 33969 CTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGCACGCTCTC 34028 | |||| || | ||||||||||| || || || |||||||| ||| ||| | || ||| Sbjct 10075 CCCGTCTTCAAGCTGCTTGCCGGCGAAGATGAGCCGCTGCTGGTCCGGCGGGATGCCCTC 10016 Query 34029 TTTGTCC 34035 |||||| Sbjct 10015 CTTGTCC 10009 Score = 82.4 bits (90), Expect = 6e-11 Identities = 96/127 (76%), Gaps = 2/127 (2%) Strand=Plus/Minus Query 33910 AGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCCAATTGT-CG 33968 || || || || ||||| || ||| ||||||||| |||||||| || || || || || Sbjct 10479 AGGCGAAGGACGAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGC-AAGGGTGCG 10421 Query 33969 CTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGCACGCTCTC 34028 | |||| || | ||||||||||| || || || |||||||| ||| ||| | || ||| Sbjct 10420 CCCGTCTTCAAGCTGCTTGCCGGCGAAGATGAGCCGCTGCTGGTCCGGCGGGATGCCCTC 10361 Query 34029 TTTGTCC 34035 |||||| Sbjct 10360 CTTGTCC 10354 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396867448069372