Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eichhornia_20paniculata_20[genbank_20GCA_5F001647135.1_202016-05-02] 40,286 sequences; 571,388,321 total letters Query= NC_009899.1 Length=344691 Score E Sequences producing significant alignments: (Bits) Value seq2656 123 5e-23 seq32078 118 2e-21 seq7765 118 2e-21 seq2510 113 1e-19 >seq2656 Length=42395 Score = 123 bits (136), Expect = 5e-23 Identities = 289/431 (67%), Gaps = 4/431 (1%) Strand=Plus/Minus Query 243292 GCTGAGCGTCTCGTCGCCTGGGTGTGCGTTGAAGGTATTCTGTTTTCCGGGAGTTTCTGC 243351 || ||||| ||||| |||| | ||||| ||||| || | || ||||| |||||| Sbjct 41823 GCCGAGCGCCTCGTTGCCTTCGCCTGCGTCGAAGGCATCTTCTTCTCCGGCTCCTTCTGC 41764 Query 243352 GCCATCTTTTGGCTGCGGAACAAAGGTGTGATGCCTGGCCTCGGTCTGTCTAACGAGTTC 243411 || ||||| ||||| ||| || | |||||||||||| | || |||||| || Sbjct 41763 GCAATCTTCTGGCTCAAGAAGCGCGGACTCATGCCTGGCCTCACGTTCTCCAACGAGCTC 41704 Query 243412 ATCAGTCGCGACGAGGGCCTTCACCAACAGTTCGGTGAGCTTATGTATTCAAAGCTCCAG 243471 ||| ||||||||||||||| ||| | |||| ||| | || ||| | Sbjct 41703 ATCTCTCGCGACGAGGGCCTCCACTGCGACTTCGCCTGCCTTCTCTACAGCCTCCTCAAC 41644 Query 243472 AACAAGCTACCATTCGAAACGGTCAAACAAATCATCACAGAAGCAGTTGAAAACGAAAAG 243531 |||||| | || || | | | | | ||| ||| ||| || || || | || | Sbjct 41643 AACAAGTTGCCCGAAGAGAGGATTAGATCCATCGTCAAAGAGGCGGTCGACATTGAGCGG 41584 Query 243532 GAATTCATTTGCGACGCTATTCC-ATGCCGGCTTATTGGCATGAACTCTGAACTCATGGG 243590 || ||| | ||||||||| | || || | |||| | || |||||| || || ||| | Sbjct 41583 GAGTTCGTCTGCGACGCTCTGCCTGTGGC-GCTTGTAGGGATGAACGGGGAGCTGATGAG 41525 Query 243591 ACAGTACATCGAATTCGTAGCCGACCGCATTTTCATCGCGCTTGGTTATGAGAAAGTGTA 243650 || |||||||| ||||||||||| || | | ||||| | || ||| | || Sbjct 41524 TCAATACATCGAGTTCGTAGCCGATCGGCTGCTGGGAGCGCTCGATTGCAGCAAAATCTA 41465 Query 243651 CAAC-TCCAAGAACCCCTTTGCCTTTATGGAGCTCATTTCGCTTCAAGGGAAAACTAACT 243709 | ||| | || || || | || ||||||||||| ||||| || ||||| || |||| Sbjct 41464 TGGCGTCCCA-AATCCGTTCGACTGGATGGAGCTCATATCGCTGCAGGGGAAGACCAACT 41406 Query 243710 TCTTCGAAAAG 243720 ||||||| ||| Sbjct 41405 TCTTCGAGAAG 41395 >seq32078 Length=1569 Score = 118 bits (130), Expect = 2e-21 Identities = 305/459 (66%), Gaps = 12/459 (3%) Strand=Plus/Plus Query 243286 TCATTTGCTGAGCGTCTCGTCGCCTGGGTGTGCGTTGAAGGTATTCTGTTTTCCGGGAGT 243345 || ||||| ||||| ||||||||| | ||||| || ||||| | || ||||| Sbjct 985 TCCTTTGCCGAGCGCATCGTCGCCTTTGCCTGCGTCGAGGGTATCTTCTTCTCCGGCTCC 1044 Query 243346 TTCTGCGCCATCTTTTGGCTGCGGAACAAAGGTGTGATGCCTGGCCTCGGTCTGTCTAAC 243405 || ||| ||||||| ||||| ||| || | |||||||| ||| | || ||| Sbjct 1045 TTTTGCTCCATCTTCTGGCTCAAGAAGCGGGGCCTCATGCCTGGGCTCACCTTCTCCAAC 1104 Query 243406 GAGTTCATCAGTCGCGACGAGGGCCTTCACCAACAGTTCGGTGAGCTTATGTATTCAAAG 243465 ||| ||||| || |||||||| || ||| | |||| || | || | Sbjct 1105 GAGCTCATCTCCCGTGACGAGGGTCTCCACTGCGACTTCGCCTGCCTCCTCTAC---AGC 1161 Query 243466 CTCCAGAACAAGCTA---CCATTCGAAACGGTCAAACAAATCATCACAGAAGCAGTTGAA 243522 |||| |||||| | || |||| || || ||| | ||| || || || Sbjct 1162 CTCCTGAACAACAAATTGCCCGAGGAAAAAGTGAAGTCCATCGTGGAAGACGCCGTCGAT 1221 Query 243523 AACGAAAAGGAATTCATTTGCGACGCTATTCCA--TGCCGGCTTATTGGCATGAACTCTG 243580 | |||| ||||||| | || ||||| | ||| ||| || | ||||||||| | Sbjct 1222 ATCGAACGGGAATTCGTGTGTGACGCGTTGCCAGTTGCA--CTGGTGGGCATGAACGGGG 1279 Query 243581 AACTCATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTCATCGCGCTTGGTTATG 243640 || ||| | |||||||| |||||||| |||||||| | | || || ||||| || Sbjct 1280 TTCTGATGAGCCAGTACATTGAATTCGTGGCCGACCGGTTGATGATGGCTCTTGGCTAC- 1338 Query 243641 AGAAAG-TGTACAACTCCAAGAACCCCTTTGCCTTTATGGAGCTCATTTCGCTTCAAGGG 243699 || ||| | || | || ||| || |||| || ||||||||||| ||| | || ||| Sbjct 1339 AGCAAGATTTATGGCGTCACGAATCCTTTTGACTGGATGGAGCTCATCTCGTTGCAGGGG 1398 Query 243700 AAAACTAACTTCTTCGAAAAGCGTGTCAGTGATTATCAA 243738 |||||||| ||||| || || | ||| | ||||| ||| Sbjct 1399 AAAACTAATTTCTTTGAGAAAAGAGTCGGCGATTACCAA 1437 >seq7765 Length=42474 Score = 118 bits (130), Expect = 2e-21 Identities = 305/459 (66%), Gaps = 12/459 (3%) Strand=Plus/Minus Query 243286 TCATTTGCTGAGCGTCTCGTCGCCTGGGTGTGCGTTGAAGGTATTCTGTTTTCCGGGAGT 243345 || ||||| ||||| ||||||||| | ||||| || ||||| | || ||||| Sbjct 40198 TCCTTTGCCGAGCGCATCGTCGCCTTTGCCTGCGTCGAGGGTATCTTCTTCTCCGGCTCC 40139 Query 243346 TTCTGCGCCATCTTTTGGCTGCGGAACAAAGGTGTGATGCCTGGCCTCGGTCTGTCTAAC 243405 || ||| ||||||| ||||| ||| || | |||||||| ||| | || ||| Sbjct 40138 TTTTGCTCCATCTTCTGGCTCAAGAAGCGGGGCCTCATGCCTGGGCTCACCTTCTCCAAC 40079 Query 243406 GAGTTCATCAGTCGCGACGAGGGCCTTCACCAACAGTTCGGTGAGCTTATGTATTCAAAG 243465 ||| ||||| || |||||||| || ||| | |||| || | || | Sbjct 40078 GAGCTCATCTCCCGTGACGAGGGACTCCACTGCGACTTCGCCTGCCTCCTCTAC---AGC 40022 Query 243466 CTCCAGAACAAGCTA---CCATTCGAAACGGTCAAACAAATCATCACAGAAGCAGTTGAA 243522 |||| |||||| | || |||| || || ||| | ||| || || || Sbjct 40021 CTCCTGAACAACAAATTGCCCGAGGAAAAAGTGAAGTCCATCGTGGAAGACGCCGTCGAT 39962 Query 243523 AACGAAAAGGAATTCATTTGCGACGCTATTCCA--TGCCGGCTTATTGGCATGAACTCTG 243580 | |||| ||||||| | || ||||| | ||| ||| || | ||||||||| | Sbjct 39961 ATCGAACGGGAATTCGTGTGTGACGCGTTGCCAGTTGCA--CTGGTGGGCATGAACGGGG 39904 Query 243581 AACTCATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTCATCGCGCTTGGTTATG 243640 || ||| | |||||||| |||||||| |||||||| | | || || ||||| || Sbjct 39903 TTCTGATGAGCCAGTACATTGAATTCGTGGCCGACCGGTTGATGATGGCTCTTGGCTAC- 39845 Query 243641 AGAAAG-TGTACAACTCCAAGAACCCCTTTGCCTTTATGGAGCTCATTTCGCTTCAAGGG 243699 || ||| | || | || ||| || |||| || ||||||||||| ||| | || ||| Sbjct 39844 AGCAAGATTTATGGCGTCACGAATCCTTTTGACTGGATGGAGCTCATCTCGTTGCAGGGG 39785 Query 243700 AAAACTAACTTCTTCGAAAAGCGTGTCAGTGATTATCAA 243738 |||||||| ||||| || || | ||| | ||||| ||| Sbjct 39784 AAAACTAATTTCTTTGAGAAAAGAGTCGGCGATTACCAA 39746 >seq2510 Length=43382 Score = 113 bits (124), Expect = 1e-19 Identities = 304/459 (66%), Gaps = 12/459 (3%) Strand=Plus/Plus Query 243286 TCATTTGCTGAGCGTCTCGTCGCCTGGGTGTGCGTTGAAGGTATTCTGTTTTCCGGGAGT 243345 || ||||| ||||| ||||||||| | ||||| || ||||| | || ||||| Sbjct 21079 TCCTTTGCCGAGCGCATCGTCGCCTTTGCCTGCGTCGAGGGTATCTTCTTCTCCGGCTCC 21138 Query 243346 TTCTGCGCCATCTTTTGGCTGCGGAACAAAGGTGTGATGCCTGGCCTCGGTCTGTCTAAC 243405 |||||| ||||||| ||||| ||| ||| | |||||||| || | || ||| Sbjct 21139 TTCTGCTCCATCTTCTGGCTCAAGAAGCGAGGCCTCATGCCTGGGCTAACCTTCTCCAAC 21198 Query 243406 GAGTTCATCAGTCGCGACGAGGGCCTTCACCAACAGTTCGGTGAGCTTATGTATTCAAAG 243465 ||| ||||| || |||||||| || ||| | |||| || | || | Sbjct 21199 GAGCTCATCTCCCGTGACGAGGGACTCCACTGCGACTTCGCCTGCCTCCTCTAC---AGC 21255 Query 243466 CTCCAGAACAAGCTA---CCATTCGAAACGGTCAAACAAATCATCACAGAAGCAGTTGAA 243522 |||| |||||| | || |||| || || ||| | ||| || || || Sbjct 21256 CTCCTGAACAACAAATTGCCCGAGGAAAAAGTGAAGTCTATCGTGGAAGACGCCGTCGAT 21315 Query 243523 AACGAAAAGGAATTCATTTGCGACGCTATTCCA--TGCCGGCTTATTGGCATGAACTCTG 243580 | |||| ||||||| | || ||||| | ||| ||| || | || |||||| | Sbjct 21316 ATCGAACGGGAATTCGTGTGTGACGCGTTGCCAGTTGCA--CTGGTGGGTATGAACGGGG 21373 Query 243581 AACTCATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTCATCGCGCTTGGTTATG 243640 || ||| | |||||||| |||||||| || ||||| | | || || ||||| || Sbjct 21374 TTCTGATGAGTCAGTACATTGAATTCGTCGCGGACCGGTTGATGATGGCTCTTGGCTAC- 21432 Query 243641 AGAAAG-TGTACAACTCCAAGAACCCCTTTGCCTTTATGGAGCTCATTTCGCTTCAAGGG 243699 || ||| | || | || ||| || |||| || ||||||||||| ||| | || ||| Sbjct 21433 AGCAAGATTTATGGCGTCACGAATCCTTTTGACTGGATGGAGCTCATCTCGTTGCAGGGG 21492 Query 243700 AAAACTAACTTCTTCGAAAAGCGTGTCAGTGATTATCAA 243738 |||||||| ||||| || || | ||| | ||||| ||| Sbjct 21493 AAAACTAATTTCTTTGAGAAAAGAGTCGGCGATTACCAA 21531 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1102310732634100