Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eichhornia_20paniculata_20[genbank_20GCA_5F001647135.1_202016-05-02] 40,286 sequences; 571,388,321 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq32078 159 4e-34 seq7765 156 5e-33 seq2510 156 5e-33 seq2656 123 3e-23 seq4514 114 2e-20 seq70 100 3e-16 seq992 89.7 6e-13 seq4174 86.0 7e-12 seq3117 82.4 9e-11 >seq32078 Length=1569 Score = 159 bits (176), Expect = 4e-34 Identities = 169/222 (76%), Gaps = 3/222 (1%) Strand=Plus/Minus Query 126058 GTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCTGGCATGAGACC 126117 ||||||||||||||||||||||||||| || || |||||| || || |||||||| || Sbjct 1134 GTGGAGACCCTCGTCACGGGAGATGAGCTCGTTGGAGAAGGTGAGCCCAGGCATGAGGCC 1075 Query 126118 CCGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATTCCCTCCACACA 126177 ||||||||| | |||||| || | ||||| || || ||||||||||| ||||| || || Sbjct 1074 CCGCTTCTTGAGCCAGAAGATGGAGCAAAAGGAGCCGGAGAAGAAGATACCCTCGACGCA 1015 Query 126178 CGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGCGACTTTGTGTCAAACCACTTCATCGC 126237 || || || | || ||||| |||||||||| |||| | || | ||| || || Sbjct 1014 GGCAAAGGCGACGATGCGCTCGGCAAAGGAGCTCGAC---GAGTGGATCCAACGCAGAGC 958 Query 126238 CCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGC 126279 ||| | ||||| || ||| || |||||||| | |||||| Sbjct 957 CCAGTCGGCCTTCTTTCCGACGCAGGGGACGGTTTCGATCGC 916 >seq7765 Length=42474 Score = 156 bits (172), Expect = 5e-33 Identities = 168/222 (76%), Gaps = 3/222 (1%) Strand=Plus/Plus Query 126058 GTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCTGGCATGAGACC 126117 |||||| |||||||||||||||||||| || || |||||| || || |||||||| || Sbjct 40049 GTGGAGTCCCTCGTCACGGGAGATGAGCTCGTTGGAGAAGGTGAGCCCAGGCATGAGGCC 40108 Query 126118 CCGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATTCCCTCCACACA 126177 ||||||||| | |||||| || | ||||| || || ||||||||||| ||||| || || Sbjct 40109 CCGCTTCTTGAGCCAGAAGATGGAGCAAAAGGAGCCGGAGAAGAAGATACCCTCGACGCA 40168 Query 126178 CGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGCGACTTTGTGTCAAACCACTTCATCGC 126237 || || || | || ||||| |||||||||| |||| | || | ||| || || Sbjct 40169 GGCAAAGGCGACGATGCGCTCGGCAAAGGAGCTCGAC---GAGTGGATCCAACGCAGAGC 40225 Query 126238 CCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGC 126279 ||| | ||||| || ||| || |||||||| | |||||| Sbjct 40226 CCAGTCGGCCTTCTTTCCGACGCAGGGGACGGTTTCGATCGC 40267 >seq2510 Length=43382 Score = 156 bits (172), Expect = 5e-33 Identities = 168/222 (76%), Gaps = 3/222 (1%) Strand=Plus/Minus Query 126058 GTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCTGGCATGAGACC 126117 |||||| |||||||||||||||||||| || || |||||| || || |||||||| || Sbjct 21228 GTGGAGTCCCTCGTCACGGGAGATGAGCTCGTTGGAGAAGGTTAGCCCAGGCATGAGGCC 21169 Query 126118 CCGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATTCCCTCCACACA 126177 |||||||| | |||||| || | || || || || ||||||||||| ||||| || || Sbjct 21168 TCGCTTCTTGAGCCAGAAGATGGAGCAGAAGGAGCCGGAGAAGAAGATACCCTCGACGCA 21109 Query 126178 CGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGCGACTTTGTGTCAAACCACTTCATCGC 126237 || || || | || ||||| |||||||| | |||| | || | ||| || ||| Sbjct 21108 GGCAAAGGCGACGATGCGCTCGGCAAAGGAACTCGAC---GAGTGGATCCAACGCAGCGC 21052 Query 126238 CCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGC 126279 ||||| ||||| || ||| || |||||||||| |||||| Sbjct 21051 CCACTCGGCCTTCTTTCCGACGCAGGGGACGGTCTCGATCGC 21010 >seq2656 Length=42395 Score = 123 bits (136), Expect = 3e-23 Identities = 161/222 (73%), Gaps = 3/222 (1%) Strand=Plus/Plus Query 126058 GTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCTGGCATGAGACC 126117 |||||| |||||||| || |||||||| || || ||||| || || |||||||| || Sbjct 41680 GTGGAGGCCCTCGTCGCGAGAGATGAGCTCGTTGGAGAACGTGAGGCCAGGCATGAGTCC 41739 Query 126118 CCGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATTCCCTCCACACA 126177 |||||||| | |||||| || || || || || || ||||||||||| || || || || Sbjct 41740 GCGCTTCTTGAGCCAGAAGATTGCGCAGAAGGAGCCGGAGAAGAAGATGCCTTCGACGCA 41799 Query 126178 CGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGCGACTTTGTGTCAAACCACTTCATCGC 126237 ||||| |||| ||| ||||| || |||| |||| | | ||| | ||| Sbjct 41800 GGCGAAGGCAACGAGGCGCTCGGCGTAGGAATCCGAC---GAACGGATCCAGCGGACCGC 41856 Query 126238 CCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGC 126279 ||| | ||||| || ||| || |||||||||| |||||| Sbjct 41857 CCAGTCGGCCTTCTTGCCGACGCAGGGGACGGTCTCGATCGC 41898 >seq4514 Length=32024 Score = 114 bits (126), Expect = 2e-20 Identities = 220/319 (69%), Gaps = 4/319 (1%) Strand=Plus/Plus Query 10835 CGGTTCGTCGCCGCGATGACAACGATGCCCGTCTCGTTATCAAAGCCATCCATCTCAGTC 10894 ||||| || || || ||||||| ||| || || | |||||||||||||||||||| Sbjct 21808 CGGTTTGTAGCAGCAATGACAATGATACCAGTATTTCCTTCAAAGCCATCCATCTCAGTT 21867 Query 10895 AAGAGTTGATTGATGGTTTGTTCGCGTTCATCATTCGCGGGCATACCACCCGCACTGCGT 10954 ||||| || || | |||||||| | ||||||||| | | ||| | | | | Sbjct 21868 AAGAGCTGGTTAAGTGTTTGTTCCCTTTCATCATTTCCACCTCCAATACCTGTTCCTCTT 21927 Query 10955 TGCTTACCGACGGCGTCAATTTCATCGATGAAAACGATACACGGTTGATTTTC-ACGGGC 11013 ||| | || || || ||||| ||||| | |||||| || || ||| |||||| || | Sbjct 21928 TGCCTTCCAACAGCATCAATCTCATCAACGAAAACAATGCATGGTGCATTTTCTTTGGCC 21987 Query 11014 AACTTCAAAGATATCTCGGACTCTCTTGGCACCGACACCCACAAACATTTCCACAAAATT 11073 ||| ||| | ||| || ||||| ||||| ||||| |||||||| || ||||| | Sbjct 21988 TTCTTGAAA-AGATCACGAACTCTTGAAGCACCAACACCAACAAACATCTCTACAAACTC 22046 Query 11074 GGCGGCGGAACATTG-GATGAAGGGGACGTTGGATTCACCCGCGATGGCTCGGGCGAGGA 11132 || | ||| |||| || || || || | |||||| || || || || || | Sbjct 22047 GGAACCAGAA-ATTGAGAAAAATGGAACACCAGCTTCACCAGCAATTGCCTTAGCCAGCA 22105 Query 11133 GGGTCTTCCCCGTCCCAGG 11151 | |||||||| || || || Sbjct 22106 GTGTCTTCCCAGTGCCTGG 22124 >seq70 Length=129315 Score = 100 bits (110), Expect = 3e-16 Identities = 219/321 (68%), Gaps = 8/321 (2%) Strand=Plus/Plus Query 10835 CGGTTCGTCGCCGCGATGACAACGATGCCCGTCTCGTTATCAAAGCCATCCATCTCAGTC 10894 ||||| || || || || |||| || || || | |||||||||||||||||||| Sbjct 36480 CGGTTTGTAGCTGCAATAACAATGACACCAGTGTTTCCTTCAAAGCCATCCATCTCAGTT 36539 Query 10895 AAGAGTTGATTGATGGTTTGTTCGCGTTCATCATTCGCGGGCATACCA--CCCGCACTGC 10952 ||||| || || | |||||||| | |||||||| | | | | | || || | | Sbjct 36540 AAGAGCTGGTTAAGCGTTTGTTCTCTCTCATCATTTCC--ACCTCCAATTCCTGCTCCTC 36597 Query 10953 GTTGCTTACCGACGGCGTCAATTTCATCGATGAAAACGATACACGGTTGATTTTC-ACGG 11011 |||| | || || || ||||||||||| | |||||| || || ||| |||||| || Sbjct 36598 TTTGCCTTCCAACTGCATCAATTTCATCAACGAAAACAATGCATGGTGCATTTTCTTTGG 36657 Query 11012 GCAACTTCAAAGATATCTCGGACTCTCTTGGCACCGACACCCACAAACATTTCCACAAAA 11071 | ||| ||| | || || ||||| ||||| || || |||||||| || ||||| Sbjct 36658 CCTTCTTGAAA-AGTTCACGAACTCTTGAAGCACCAACGCCGACAAACATCTCTACAAAC 36716 Query 11072 TTGGCGGCGGAACATTG-GATGAAGGGGACGTTGGATTCACCCGCGATGGCTCGGGCGAG 11130 | | | ||| |||| || || || || | |||||| ||||| || || || Sbjct 36717 TCAGAACCTGAA-ATTGAGAAAAATGGAACACCAGCTTCACCGGCGATTGCCTTAGCCAG 36775 Query 11131 GAGGGTCTTCCCCGTCCCAGG 11151 || |||||||| || || || Sbjct 36776 CAGTGTCTTCCCAGTACCCGG 36796 >seq992 Length=120957 Score = 89.7 bits (98), Expect = 6e-13 Identities = 190/281 (68%), Gaps = 12/281 (4%) Strand=Plus/Minus Query 10877 AAGCCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCGCGTTCATCATT--CGCGG 10934 || ||||||||||| ||||| || |||||||| || || || | || || || | | Sbjct 3160 AACCCATCCATCTCTGTCAATAGCTGATTGATTGTCTGCTCTCTCTCGTCGTTTCCACCT 3101 Query 10935 GCATACCACCCGCACTGCGTTGCTTACCGACGGCGTCAATTTCATCGATGAAAACGATAC 10994 || | || |||| || ||| | || || || ||||||||||| ||||| || || | Sbjct 3100 CCAAGC--CCGGCACCACGCTGCCTTCCCACAGCATCAATTTCATCTATGAACACAATGC 3043 Query 10995 ACGG----TTGATTTTCACGGGCAACTTCAAAGATATCTCGGACTCTCTTGGCACCGACA 11050 | || || |||| || || || | || ||||||||| |||||| || Sbjct 3042 AGGGGGCCTTCGATTTC----GCCTTCTCGAACAAGTCCCGGACTCTCGAGGCACCCACT 2987 Query 11051 CCCACAAACATTTCCACAAAATTGGCGGCGGAACATTGGATGAAGGGGACGTTGGATTCA 11110 |||||||||| ||| || || | || || | |||| || |||||| ||| || || Sbjct 2986 CCCACAAACAATTCAACGAACTCGGATGCCGCACATGAGAAGAAGGGCACGCCGGCCTCC 2927 Query 11111 CCCGCGATGGCTCGGGCGAGGAGGGTCTTCCCCGTCCCAGG 11151 || || | || | ||| || || ||||| || || || || Sbjct 2926 CCGGCCACTGCCCTGGCCAGCAGAGTCTTACCAGTTCCGGG 2886 >seq4174 Length=33674 Score = 86.0 bits (94), Expect = 7e-12 Identities = 188/279 (67%), Gaps = 2/279 (1%) Strand=Plus/Plus Query 10874 TCAAAGCCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCGCGTTCATCATTCGCG 10933 ||||| ||||||||||| ||||| |||||||| | || ||||| | ||||||||| | Sbjct 23028 TCAAAACCATCCATCTCGGTCAAAAGTTGATTTAGAGTCTGTTCTCTTTCATCATTTCCT 23087 Query 10934 GGCATACCACCCGCACTGCGTTGCTTACCGACGGCGTCAATTTCATCGATGAAAACGATA 10993 | | || | | | ||| | || || || |||||||| || | ||||| ||| Sbjct 23088 CCCCCAATGCCTGTTCCTCTTTGTCTCCCAACAGCATCAATTTCGTCAACAAAAACAATA 23147 Query 10994 CACGGTTGATTTTCACGGGCAACTTCAAAGATATCTCGGACTCTCTTGGCACCGACACCC 11053 || ||| ||| || || || || | ||| ||||||| ||||||||||| Sbjct 23148 CAAGGTGCATTCTCTTTTGCCTTTTTGAAAAGATCACGGACTCGTGAAGCACCGACACCA 23207 Query 11054 ACAAACATTTCCACAAAATTGGCGGCGGAACATTG-GATGAAGGGGACGTTGGATTCACC 11112 |||||||| || ||||| | | | ||| || | || || ||||| | ||||| Sbjct 23208 ACAAACATCTCAACAAATTCTGATCCCGAA-ATAGAGAAAAATGGGACTCCAGCCTCACC 23266 Query 11113 CGCGATGGCTCGGGCGAGGAGGGTCTTCCCCGTCCCAGG 11151 || || ||| || || || ||||| || ||||| || Sbjct 23267 TGCAATAGCTTTAGCAAGAAGAGTCTTTCCAGTCCCTGG 23305 >seq3117 Length=39173 Score = 82.4 bits (90), Expect = 9e-11 Identities = 71/88 (81%), Gaps = 0/88 (0%) Strand=Plus/Plus Query 113941 ATAGATATTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCGGTGGA 114000 ||| || |||| ||||||||||||||||||||||||||| |||| ||||| || || Sbjct 12417 ATAAATGTTGGACGTGTATGGCTCAAAGCACTCATTGTTTCCCAGTATTTGACTAGTTGA 12476 Query 114001 GGCTGTGGGCATGGGTGCCATGAGAAGG 114028 || |||||||| || || || |||||| Sbjct 12477 AGCAGTGGGCATAGGAGCAATAAGAAGG 12504 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 597052787660880