Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eichhornia_20paniculata_20[genbank_20GCA_5F001647135.1_202016-05-02] 40,286 sequences; 571,388,321 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq32078 159 4e-34 seq7765 154 2e-32 seq2510 154 2e-32 seq2656 129 7e-25 seq4514 120 4e-22 seq5771 102 1e-16 seq70 100 3e-16 seq4174 95.1 1e-14 seq3117 87.8 2e-12 >seq32078 Length=1569 Score = 159 bits (176), Expect = 4e-34 Identities = 170/223 (76%), Gaps = 5/223 (2%) Strand=Plus/Minus Query 127531 GTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACC 127590 ||||||||||||||||||||||||||| || || |||||| || || |||||||| || Sbjct 1134 GTGGAGACCCTCGTCACGGGAGATGAGCTCGTTGGAGAAGGTGAGCCCAGGCATGAGGCC 1075 Query 127591 CCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACA 127650 ||||||||| | |||||| || | ||||| ||||| ||||||||||| ||||| || || Sbjct 1074 CCGCTTCTTGAGCCAGAAGATGGAGCAAAAGGAGCCGGAGAAGAAGATACCCTCGACGCA 1015 Query 127651 CGCGAACGCAAATAGACGCTCGGCAAAGGAGCGGGAC-TTTGTATCAAACCACTTCATCG 127709 || || || | | |||||||||||||||| ||| || ||| ||| || | Sbjct 1014 GGCAAAGGCGACGATGCGCTCGGCAAAGGAGCTCGACGAGTGGATCCAAC----GCAGAG 959 Query 127710 CCCACTGTGCCTTTTTCTCGATACATGGGACGGTCTGGATCGC 127752 |||| | ||||| || ||| || |||||||| | |||||| Sbjct 958 CCCAGTCGGCCTTCTTTCCGACGCAGGGGACGGTTTCGATCGC 916 >seq7765 Length=42474 Score = 154 bits (170), Expect = 2e-32 Identities = 169/223 (76%), Gaps = 5/223 (2%) Strand=Plus/Plus Query 127531 GTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACC 127590 |||||| |||||||||||||||||||| || || |||||| || || |||||||| || Sbjct 40049 GTGGAGTCCCTCGTCACGGGAGATGAGCTCGTTGGAGAAGGTGAGCCCAGGCATGAGGCC 40108 Query 127591 CCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACA 127650 ||||||||| | |||||| || | ||||| ||||| ||||||||||| ||||| || || Sbjct 40109 CCGCTTCTTGAGCCAGAAGATGGAGCAAAAGGAGCCGGAGAAGAAGATACCCTCGACGCA 40168 Query 127651 CGCGAACGCAAATAGACGCTCGGCAAAGGAGCGGGAC-TTTGTATCAAACCACTTCATCG 127709 || || || | | |||||||||||||||| ||| || ||| ||| || | Sbjct 40169 GGCAAAGGCGACGATGCGCTCGGCAAAGGAGCTCGACGAGTGGATCCAAC----GCAGAG 40224 Query 127710 CCCACTGTGCCTTTTTCTCGATACATGGGACGGTCTGGATCGC 127752 |||| | ||||| || ||| || |||||||| | |||||| Sbjct 40225 CCCAGTCGGCCTTCTTTCCGACGCAGGGGACGGTTTCGATCGC 40267 >seq2510 Length=43382 Score = 154 bits (170), Expect = 2e-32 Identities = 169/223 (76%), Gaps = 5/223 (2%) Strand=Plus/Minus Query 127531 GTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACC 127590 |||||| |||||||||||||||||||| || || |||||| || || |||||||| || Sbjct 21228 GTGGAGTCCCTCGTCACGGGAGATGAGCTCGTTGGAGAAGGTTAGCCCAGGCATGAGGCC 21169 Query 127591 CCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACA 127650 |||||||| | |||||| || | || || ||||| ||||||||||| ||||| || || Sbjct 21168 TCGCTTCTTGAGCCAGAAGATGGAGCAGAAGGAGCCGGAGAAGAAGATACCCTCGACGCA 21109 Query 127651 CGCGAACGCAAATAGACGCTCGGCAAAGGAGCGGGAC-TTTGTATCAAACCACTTCATCG 127709 || || || | | |||||||||||||| | ||| || ||| ||| || || Sbjct 21108 GGCAAAGGCGACGATGCGCTCGGCAAAGGAACTCGACGAGTGGATCCAAC----GCAGCG 21053 Query 127710 CCCACTGTGCCTTTTTCTCGATACATGGGACGGTCTGGATCGC 127752 |||||| ||||| || ||| || |||||||||| |||||| Sbjct 21052 CCCACTCGGCCTTCTTTCCGACGCAGGGGACGGTCTCGATCGC 21010 >seq2656 Length=42395 Score = 129 bits (142), Expect = 7e-25 Identities = 162/222 (73%), Gaps = 3/222 (1%) Strand=Plus/Plus Query 127531 GTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACC 127590 |||||| |||||||| || |||||||| || || ||||| || || |||||||| || Sbjct 41680 GTGGAGGCCCTCGTCGCGAGAGATGAGCTCGTTGGAGAACGTGAGGCCAGGCATGAGTCC 41739 Query 127591 CCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACA 127650 |||||||| | |||||| || || || || ||||| ||||||||||| || || || || Sbjct 41740 GCGCTTCTTGAGCCAGAAGATTGCGCAGAAGGAGCCGGAGAAGAAGATGCCTTCGACGCA 41799 Query 127651 CGCGAACGCAAATAGACGCTCGGCAAAGGAGCGGGACTTTGTATCAAACCACTTCATCGC 127710 ||||| |||| || |||||||| |||| ||| | | | ||| | ||| Sbjct 41800 GGCGAAGGCAACGAGGCGCTCGGCGTAGGAATCCGAC---GAACGGATCCAGCGGACCGC 41856 Query 127711 CCACTGTGCCTTTTTCTCGATACATGGGACGGTCTGGATCGC 127752 ||| | ||||| || ||| || |||||||||| |||||| Sbjct 41857 CCAGTCGGCCTTCTTGCCGACGCAGGGGACGGTCTCGATCGC 41898 >seq4514 Length=32024 Score = 120 bits (132), Expect = 4e-22 Identities = 221/319 (69%), Gaps = 4/319 (1%) Strand=Plus/Plus Query 12750 CGGTTCGTCGCCGCGATGACAACGATGCCCGTCTCGTTATCGAAGCCATCCATCTCAGTC 12809 ||||| || || || ||||||| ||| || || | || ||||||||||||||||| Sbjct 21808 CGGTTTGTAGCAGCAATGACAATGATACCAGTATTTCCTTCAAAGCCATCCATCTCAGTT 21867 Query 12810 AAGAGTTGATTGATGGTTTGTTCACGTTCATCATTCGCGGGCATACCACCCGCACTGCGT 12869 ||||| || || | |||||||| | ||||||||| | | ||| | | | | Sbjct 21868 AAGAGCTGGTTAAGTGTTTGTTCCCTTTCATCATTTCCACCTCCAATACCTGTTCCTCTT 21927 Query 12870 TGCTTACCGACGGCGTCAATTTCGTCAATGAAAACGATACACGGTTGATTTTC-ACGGGC 12928 ||| | || || || ||||| || |||| |||||| || || ||| |||||| || | Sbjct 21928 TGCCTTCCAACAGCATCAATCTCATCAACGAAAACAATGCATGGTGCATTTTCTTTGGCC 21987 Query 12929 AACTTCAAAGATATCTCGCACTCTCTTGGCACCGACACCCACAAACATCTCCACAAAATT 12988 ||| ||| | ||| || ||||| ||||| ||||| ||||||||||| ||||| | Sbjct 21988 TTCTTGAAA-AGATCACGAACTCTTGAAGCACCAACACCAACAAACATCTCTACAAACTC 22046 Query 12989 GGCGGCGGAACATTG-GATGAAGGGGACGTTGGATTCACCCGCGATGGCTCGGGCGAGGA 13047 || | ||| |||| || || || || | |||||| || || || || || | Sbjct 22047 GGAACCAGAA-ATTGAGAAAAATGGAACACCAGCTTCACCAGCAATTGCCTTAGCCAGCA 22105 Query 13048 GGGTCTTCCCCGTCCCTGG 13066 | |||||||| || ||||| Sbjct 22106 GTGTCTTCCCAGTGCCTGG 22124 >seq5771 Length=39350 Score = 102 bits (112), Expect = 1e-16 Identities = 194/284 (68%), Gaps = 14/284 (5%) Strand=Plus/Minus Query 12790 CGAAGCCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCACGTTCATCATTCGCGG 12849 |||| || |||||||| |||||||| |||||||| || ||||| | ||| || ||| | Sbjct 4003 CGAACCCGTCCATCTCTGTCAAGAGCTGATTGATAGTCTGTTCTCTTTCGTCGTTCCCT- 3945 Query 12850 GCATACCA--CCCGCACTGCGTTGCTTACCGACGGCGTCAATTTCGTCAATGAAAACGAT 12907 | | | | || |||| || ||| | ||||| || ||||||||||| ||||| || || Sbjct 3944 -CCTCCAAGTCCAGCACCACGCTGCCTTCCGACAGCATCAATTTCGTCTATGAACACAAT 3886 Query 12908 ACACGG-----TTGATTTTCACGGGCAACTTCAAAGATATCTCGCACTCTCTTGGCACCG 12962 || || | |||||| || || || | || || || || ||||||| Sbjct 3885 GCAGGGGGCCTTGGATTTT-----GCCTTCTCGAACAAGTCACGGACCCTTGAGGCACCG 3831 Query 12963 ACACCCACAAACATCTCCACAAAATTGGCGGCGGAACATTGGATGAAGGGGACGTTGGAT 13022 || ||||| |||| ||| || || | || || | |||| || |||||| ||| | Sbjct 3830 ACCCCCACGAACAGCTCAACGAACTCGGATGCCGCACATGAGAAGAAGGGCACGCCTGCC 3771 Query 13023 TCACCCGCGATGGCTCGGGCGAGGAGGGTCTTCCCCGTCCCTGG 13066 || || || | || ||||| || || ||||| || || || || Sbjct 3770 TCCCCGGCCACCGCCCGGGCCAGAAGAGTCTTACCGGTTCCCGG 3727 >seq70 Length=129315 Score = 100 bits (110), Expect = 3e-16 Identities = 219/321 (68%), Gaps = 8/321 (2%) Strand=Plus/Plus Query 12750 CGGTTCGTCGCCGCGATGACAACGATGCCCGTCTCGTTATCGAAGCCATCCATCTCAGTC 12809 ||||| || || || || |||| || || || | || ||||||||||||||||| Sbjct 36480 CGGTTTGTAGCTGCAATAACAATGACACCAGTGTTTCCTTCAAAGCCATCCATCTCAGTT 36539 Query 12810 AAGAGTTGATTGATGGTTTGTTCACGTTCATCATTCGCGGGCATACCA--CCCGCACTGC 12867 ||||| || || | |||||||| | |||||||| | | | | | || || | | Sbjct 36540 AAGAGCTGGTTAAGCGTTTGTTCTCTCTCATCATTTCC--ACCTCCAATTCCTGCTCCTC 36597 Query 12868 GTTGCTTACCGACGGCGTCAATTTCGTCAATGAAAACGATACACGGTTGATTTTC-ACGG 12926 |||| | || || || |||||||| |||| |||||| || || ||| |||||| || Sbjct 36598 TTTGCCTTCCAACTGCATCAATTTCATCAACGAAAACAATGCATGGTGCATTTTCTTTGG 36657 Query 12927 GCAACTTCAAAGATATCTCGCACTCTCTTGGCACCGACACCCACAAACATCTCCACAAAA 12986 | ||| ||| | || || ||||| ||||| || || ||||||||||| ||||| Sbjct 36658 CCTTCTTGAAA-AGTTCACGAACTCTTGAAGCACCAACGCCGACAAACATCTCTACAAAC 36716 Query 12987 TTGGCGGCGGAACATTG-GATGAAGGGGACGTTGGATTCACCCGCGATGGCTCGGGCGAG 13045 | | | ||| |||| || || || || | |||||| ||||| || || || Sbjct 36717 TCAGAACCTGAA-ATTGAGAAAAATGGAACACCAGCTTCACCGGCGATTGCCTTAGCCAG 36775 Query 13046 GAGGGTCTTCCCCGTCCCTGG 13066 || |||||||| || || || Sbjct 36776 CAGTGTCTTCCCAGTACCCGG 36796 >seq4174 Length=33674 Score = 95.1 bits (104), Expect = 1e-14 Identities = 190/279 (68%), Gaps = 2/279 (1%) Strand=Plus/Plus Query 12789 TCGAAGCCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCACGTTCATCATTCGCG 12848 || || ||||||||||| ||||| |||||||| | || ||||| | ||||||||| | Sbjct 23028 TCAAAACCATCCATCTCGGTCAAAAGTTGATTTAGAGTCTGTTCTCTTTCATCATTTCCT 23087 Query 12849 GGCATACCACCCGCACTGCGTTGCTTACCGACGGCGTCAATTTCGTCAATGAAAACGATA 12908 | | || | | | ||| | || || || ||||||||||||| ||||| ||| Sbjct 23088 CCCCCAATGCCTGTTCCTCTTTGTCTCCCAACAGCATCAATTTCGTCAACAAAAACAATA 23147 Query 12909 CACGGTTGATTTTCACGGGCAACTTCAAAGATATCTCGCACTCTCTTGGCACCGACACCC 12968 || ||| ||| || || || || | ||| || |||| ||||||||||| Sbjct 23148 CAAGGTGCATTCTCTTTTGCCTTTTTGAAAAGATCACGGACTCGTGAAGCACCGACACCA 23207 Query 12969 ACAAACATCTCCACAAAATTGGCGGCGGAACATTG-GATGAAGGGGACGTTGGATTCACC 13027 ||||||||||| ||||| | | | ||| || | || || ||||| | ||||| Sbjct 23208 ACAAACATCTCAACAAATTCTGATCCCGAA-ATAGAGAAAAATGGGACTCCAGCCTCACC 23266 Query 13028 CGCGATGGCTCGGGCGAGGAGGGTCTTCCCCGTCCCTGG 13066 || || ||| || || || ||||| || |||||||| Sbjct 23267 TGCAATAGCTTTAGCAAGAAGAGTCTTTCCAGTCCCTGG 23305 >seq3117 Length=39173 Score = 87.8 bits (96), Expect = 2e-12 Identities = 72/88 (82%), Gaps = 0/88 (0%) Strand=Plus/Plus Query 115902 ATAGATGTTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGA 115961 ||| ||||||| ||||||||||||||||||||||||||| |||| ||||| || || Sbjct 12417 ATAAATGTTGGACGTGTATGGCTCAAAGCACTCATTGTTTCCCAGTATTTGACTAGTTGA 12476 Query 115962 GGCTGTGGGCATGGGTGCCATGAGAAGG 115989 || |||||||| || || || |||||| Sbjct 12477 AGCAGTGGGCATAGGAGCAATAAGAAGG 12504 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613198253111760