Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Eichhornia_20paniculata_20[genbank_20GCA_5F001647135.1_202016-05-02]
40,286 sequences; 571,388,321 total letters
Query= NC_014767.1
Length=184095
Score E
Sequences producing significant alignments: (Bits) Value
seq32078 114 2e-20
seq7765 114 2e-20
seq5771 114 2e-20
seq2656 107 2e-18
seq2510 100 3e-16
>seq32078
Length=1569
Score = 114 bits (126), Expect = 2e-20
Identities = 156/218 (72%), Gaps = 0/218 (0%)
Strand=Plus/Minus
Query 119508 TGAAGCCCTTCATCCCGAGAGATGAGCTCATTACTGAAGCAAAGTCCAGGCATGAGTCCT 119567
|| || || || || || ||||||||||| || |||| || ||||||||||| ||
Sbjct 1133 TGGAGACCCTCGTCACGGGAGATGAGCTCGTTGGAGAAGGTGAGCCCAGGCATGAGGCCC 1074
Query 119568 CTTTTCTTTAGCCAAAAGATGGCACAAAAACTTCCAGAAAAGAAGATGCCCTCCACACAG 119627
| ||||| ||||| ||||||| ||||| || || |||||||| ||||| || |||
Sbjct 1073 CGCTTCTTGAGCCAGAAGATGGAGCAAAAGGAGCCGGAGAAGAAGATACCCTCGACGCAG 1014
Query 119628 GCGAAAGCGAATAGACGCTCAGCAAAAGGTCGAGACTTGTCGAACCACTTGAGAGCCCAG 119687
|| || |||| | ||||| ||||| | | ||| || || ||| |||||||||
Sbjct 1013 GCAAAGGCGACGATGCGCTCGGCAAAGGAGCTCGACGAGTGGATCCAACGCAGAGCCCAG 954
Query 119688 TTGGCCTTACGCTCTATGCAGGGGACAGTTTGGATGGC 119725
| |||||| | | ||||||||| |||| ||| ||
Sbjct 953 TCGGCCTTCTTTCCGACGCAGGGGACGGTTTCGATCGC 916
>seq7765
Length=42474
Score = 114 bits (126), Expect = 2e-20
Identities = 156/218 (72%), Gaps = 0/218 (0%)
Strand=Plus/Plus
Query 119508 TGAAGCCCTTCATCCCGAGAGATGAGCTCATTACTGAAGCAAAGTCCAGGCATGAGTCCT 119567
|| || || || || || ||||||||||| || |||| || ||||||||||| ||
Sbjct 40050 TGGAGTCCCTCGTCACGGGAGATGAGCTCGTTGGAGAAGGTGAGCCCAGGCATGAGGCCC 40109
Query 119568 CTTTTCTTTAGCCAAAAGATGGCACAAAAACTTCCAGAAAAGAAGATGCCCTCCACACAG 119627
| ||||| ||||| ||||||| ||||| || || |||||||| ||||| || |||
Sbjct 40110 CGCTTCTTGAGCCAGAAGATGGAGCAAAAGGAGCCGGAGAAGAAGATACCCTCGACGCAG 40169
Query 119628 GCGAAAGCGAATAGACGCTCAGCAAAAGGTCGAGACTTGTCGAACCACTTGAGAGCCCAG 119687
|| || |||| | ||||| ||||| | | ||| || || ||| |||||||||
Sbjct 40170 GCAAAGGCGACGATGCGCTCGGCAAAGGAGCTCGACGAGTGGATCCAACGCAGAGCCCAG 40229
Query 119688 TTGGCCTTACGCTCTATGCAGGGGACAGTTTGGATGGC 119725
| |||||| | | ||||||||| |||| ||| ||
Sbjct 40230 TCGGCCTTCTTTCCGACGCAGGGGACGGTTTCGATCGC 40267
>seq5771
Length=39350
Score = 114 bits (126), Expect = 2e-20
Identities = 310/470 (66%), Gaps = 6/470 (1%)
Strand=Plus/Minus
Query 11503 CGATCGAAACGACCTGGGCGGAGTAGAGCATCATCAAGAATATCGACACGGTTTGTAGCG 11562
|||||||| || || || || || |||||| ||| || | || | ||| || ||
Sbjct 4091 CGATCGAACCGCCCAGGCCGCAGCAGAGCAGAATCGAGGACGTCCGGCCTGTTGGTGGCC 4032
Query 11563 GCAATGACTACAATGCCAGTCTCATTGTCGAAACCGTCCATTTCTGTGAGAAGCTGGTTG 11622
|| | || | || || | | | |||| |||||||| ||||| | ||||| |||
Sbjct 4031 GCCAAAACAATAACACCGCTGTTACCTGCGAACCCGTCCATCTCTGTCAAGAGCTGATTG 3972
Query 11623 ATCGTCTGTTCACGCTCATCGTTGGAGGGCATACCA--CCTGCCGAACGCTTCTTACCGA 11680
|| |||||||| | || ||||| | | | | || || ||||| | | ||||
Sbjct 3971 ATAGTCTGTTCTCTTTCGTCGTTCCCT--CCTCCAAGTCCAGCACCACGCTGCCTTCCGA 3914
Query 11681 CAGCGTCAATCTCATCGATGAATACGATACACGGTTGGTTGGCACGTGCCTGTTCGAAAA 11740
|||| ||||| || || ||||| || || || || |||| ||||| ||||| |
Sbjct 3913 CAGCATCAATTTCGTCTATGAACACAATGCAGGGGGCCTTGGATTTTGCCTTCTCGAACA 3854
Query 11741 GTTCACGTACACGCTTCGCTCCAACACCTACGAACATCTCAACGAAGTTTGCGGCAGAAC 11800
||||| || | || || || || ||||||| ||||||||| | | || | ||
Sbjct 3853 AGTCACGGACCCTTGAGGCACCGACCCCCACGAACAGCTCAACGAACTCGGATGCCGCAC 3794
Query 11801 ACTGA-ATGAAGGGAACATTAGACTCACCAGCGATGGCTCGAGCGAGGAGAGTCTTACCC 11859
| ||| | |||||| || | ||| || || | || || || || |||||||||||
Sbjct 3793 A-TGAGAAGAAGGGCACGCCTGCCTCCCCGGCCACCGCCCGGGCCAGAAGAGTCTTACCG 3735
Query 11860 GTACCAGGTGCACCAGCGAGAAGGGCGCCACGGGGGATCTTGGCACCACTTCCAAAGTAG 11919
|| || || | || | || ||| ||| |||||| || || ||| | |||
Sbjct 3734 GTTCCCGGCGGCCCGACCAGGAGGCAGCCCTTGGGGATTTTCGCTCCAAGCGCCGTGTAC 3675
Query 11920 CGCTCAGGCTTCTTGAGGAAGTCCACAATCTCCTCAAGTTCCTCCTTGGC 11969
||||| ||||||||||||||||| | ||||| | ||| ||||||
Sbjct 3674 TTGTCAGGGTTCTTGAGGAAGTCCACCACCTCCTGCAACTCCAGCTTGGC 3625
>seq2656
Length=42395
Score = 107 bits (118), Expect = 2e-18
Identities = 300/451 (67%), Gaps = 16/451 (4%)
Strand=Plus/Plus
Query 119208 TAGTCACCCACCCTCTTTTCGAAGAAATTCGTCTTACCATCGAGTGAGATGTTTTCCATA 119267
|| || || |||||||| |||||||| || ||||| || | || || ||| |||||
Sbjct 41381 TACTCGCCAACCCTCTTCTCGAAGAAGTTGGTCTTCCCCTGCAGCGATATGAGCTCCATC 41440
Query 119268 AAGTCAAAAGGATTTTTGGAGTTCCAGATTGGTGGTTG--ACCAACTTGTTTCAGAAGAC 119325
|||| || |||||| | | ||||| | | || | | | | ||| || |
Sbjct 41441 CAGTCGAACGGATTTGGGACGCCATAGATT--TTGCTGCAATCGAGCGCTCCCAGCAGCC 41498
Query 119326 GATCGGAGACATACTCGATATATTCGGACATCTTTTCCGAATTCATACCTATGAGATTAC 119385
|||||| || ||||||| |||| |||| ||| ||||| |||| || |
Sbjct 41499 GATCGGCTACGAACTCGATGTATTGACTCATCAGCTCCCCGTTCATCCCTACAAGCGC-C 41557
Query 119386 ACGGG-AGAGCATCGAGGATGAAGTTCTTCTCGATCTCCACAGCTTCTTTCACGATGGAG 119444
|| || ||||| ||| || ||| | | ||| || || || || ||||| ||||||||
Sbjct 41558 ACAGGCAGAGCGTCGCAGACGAACTCCCGCTCAATGTCGACCGCCTCTTTGACGATGGAT 41617
Query 119445 TGAATAGTTTCTGTCGATGGT---TTGTTTCTCAAGAG--TTTAAACAACTCTACGGCAA 119499
||| | ||| ||| || ||||| | | ||| | || | || | ||| |
Sbjct 41618 CTAATCCTCTCT-TCG--GGCAACTTGTTGTTGAGGAGGCTGTAGAGAAGGCA--GGCGA 41672
Query 119500 ATTCTTGATGAAGCCCTTCATCCCGAGAGATGAGCTCATTACTGAAGCAAAGTCCAGGCA 119559
| || || || || || || |||||||||||||| || ||| || |||||||
Sbjct 41673 AGTCGCAGTGGAGGCCCTCGTCGCGAGAGATGAGCTCGTTGGAGAACGTGAGGCCAGGCA 41732
Query 119560 TGAGTCCTCTTTTCTTTAGCCAAAAGATGGCACAAAAACTTCCAGAAAAGAAGATGCCCT 119619
||||||| | ||||| ||||| ||||| || || || || || ||||||||||| |
Sbjct 41733 TGAGTCCGCGCTTCTTGAGCCAGAAGATTGCGCAGAAGGAGCCGGAGAAGAAGATGCCTT 41792
Query 119620 CCACACAGGCGAAAGCGAATAGACGCTCAGC 119650
| || |||||||| || | || ||||| ||
Sbjct 41793 CGACGCAGGCGAAGGCAACGAGGCGCTCGGC 41823
>seq2510
Length=43382
Score = 100 bits (110), Expect = 3e-16
Identities = 153/218 (70%), Gaps = 0/218 (0%)
Strand=Plus/Minus
Query 119508 TGAAGCCCTTCATCCCGAGAGATGAGCTCATTACTGAAGCAAAGTCCAGGCATGAGTCCT 119567
|| || || || || || ||||||||||| || |||| || ||||||||||| |||
Sbjct 21227 TGGAGTCCCTCGTCACGGGAGATGAGCTCGTTGGAGAAGGTTAGCCCAGGCATGAGGCCT 21168
Query 119568 CTTTTCTTTAGCCAAAAGATGGCACAAAAACTTCCAGAAAAGAAGATGCCCTCCACACAG 119627
| ||||| ||||| ||||||| || || || || |||||||| ||||| || |||
Sbjct 21167 CGCTTCTTGAGCCAGAAGATGGAGCAGAAGGAGCCGGAGAAGAAGATACCCTCGACGCAG 21108
Query 119628 GCGAAAGCGAATAGACGCTCAGCAAAAGGTCGAGACTTGTCGAACCACTTGAGAGCCCAG 119687
|| || |||| | ||||| ||||| | | ||| || || ||| || |||||
Sbjct 21107 GCAAAGGCGACGATGCGCTCGGCAAAGGAACTCGACGAGTGGATCCAACGCAGCGCCCAC 21048
Query 119688 TTGGCCTTACGCTCTATGCAGGGGACAGTTTGGATGGC 119725
| |||||| | | ||||||||| || | ||| ||
Sbjct 21047 TCGGCCTTCTTTCCGACGCAGGGGACGGTCTCGATCGC 21010
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 588679406410800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |