Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eichhornia_20paniculata_20[genbank_20GCA_5F001647135.1_202016-05-02] 40,286 sequences; 571,388,321 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq32078 114 2e-20 seq7765 114 2e-20 seq5771 114 2e-20 seq2656 107 2e-18 seq2510 100 3e-16 >seq32078 Length=1569 Score = 114 bits (126), Expect = 2e-20 Identities = 156/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 119508 TGAAGCCCTTCATCCCGAGAGATGAGCTCATTACTGAAGCAAAGTCCAGGCATGAGTCCT 119567 || || || || || || ||||||||||| || |||| || ||||||||||| || Sbjct 1133 TGGAGACCCTCGTCACGGGAGATGAGCTCGTTGGAGAAGGTGAGCCCAGGCATGAGGCCC 1074 Query 119568 CTTTTCTTTAGCCAAAAGATGGCACAAAAACTTCCAGAAAAGAAGATGCCCTCCACACAG 119627 | ||||| ||||| ||||||| ||||| || || |||||||| ||||| || ||| Sbjct 1073 CGCTTCTTGAGCCAGAAGATGGAGCAAAAGGAGCCGGAGAAGAAGATACCCTCGACGCAG 1014 Query 119628 GCGAAAGCGAATAGACGCTCAGCAAAAGGTCGAGACTTGTCGAACCACTTGAGAGCCCAG 119687 || || |||| | ||||| ||||| | | ||| || || ||| ||||||||| Sbjct 1013 GCAAAGGCGACGATGCGCTCGGCAAAGGAGCTCGACGAGTGGATCCAACGCAGAGCCCAG 954 Query 119688 TTGGCCTTACGCTCTATGCAGGGGACAGTTTGGATGGC 119725 | |||||| | | ||||||||| |||| ||| || Sbjct 953 TCGGCCTTCTTTCCGACGCAGGGGACGGTTTCGATCGC 916 >seq7765 Length=42474 Score = 114 bits (126), Expect = 2e-20 Identities = 156/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 119508 TGAAGCCCTTCATCCCGAGAGATGAGCTCATTACTGAAGCAAAGTCCAGGCATGAGTCCT 119567 || || || || || || ||||||||||| || |||| || ||||||||||| || Sbjct 40050 TGGAGTCCCTCGTCACGGGAGATGAGCTCGTTGGAGAAGGTGAGCCCAGGCATGAGGCCC 40109 Query 119568 CTTTTCTTTAGCCAAAAGATGGCACAAAAACTTCCAGAAAAGAAGATGCCCTCCACACAG 119627 | ||||| ||||| ||||||| ||||| || || |||||||| ||||| || ||| Sbjct 40110 CGCTTCTTGAGCCAGAAGATGGAGCAAAAGGAGCCGGAGAAGAAGATACCCTCGACGCAG 40169 Query 119628 GCGAAAGCGAATAGACGCTCAGCAAAAGGTCGAGACTTGTCGAACCACTTGAGAGCCCAG 119687 || || |||| | ||||| ||||| | | ||| || || ||| ||||||||| Sbjct 40170 GCAAAGGCGACGATGCGCTCGGCAAAGGAGCTCGACGAGTGGATCCAACGCAGAGCCCAG 40229 Query 119688 TTGGCCTTACGCTCTATGCAGGGGACAGTTTGGATGGC 119725 | |||||| | | ||||||||| |||| ||| || Sbjct 40230 TCGGCCTTCTTTCCGACGCAGGGGACGGTTTCGATCGC 40267 >seq5771 Length=39350 Score = 114 bits (126), Expect = 2e-20 Identities = 310/470 (66%), Gaps = 6/470 (1%) Strand=Plus/Minus Query 11503 CGATCGAAACGACCTGGGCGGAGTAGAGCATCATCAAGAATATCGACACGGTTTGTAGCG 11562 |||||||| || || || || || |||||| ||| || | || | ||| || || Sbjct 4091 CGATCGAACCGCCCAGGCCGCAGCAGAGCAGAATCGAGGACGTCCGGCCTGTTGGTGGCC 4032 Query 11563 GCAATGACTACAATGCCAGTCTCATTGTCGAAACCGTCCATTTCTGTGAGAAGCTGGTTG 11622 || | || | || || | | | |||| |||||||| ||||| | ||||| ||| Sbjct 4031 GCCAAAACAATAACACCGCTGTTACCTGCGAACCCGTCCATCTCTGTCAAGAGCTGATTG 3972 Query 11623 ATCGTCTGTTCACGCTCATCGTTGGAGGGCATACCA--CCTGCCGAACGCTTCTTACCGA 11680 || |||||||| | || ||||| | | | | || || ||||| | | |||| Sbjct 3971 ATAGTCTGTTCTCTTTCGTCGTTCCCT--CCTCCAAGTCCAGCACCACGCTGCCTTCCGA 3914 Query 11681 CAGCGTCAATCTCATCGATGAATACGATACACGGTTGGTTGGCACGTGCCTGTTCGAAAA 11740 |||| ||||| || || ||||| || || || || |||| ||||| ||||| | Sbjct 3913 CAGCATCAATTTCGTCTATGAACACAATGCAGGGGGCCTTGGATTTTGCCTTCTCGAACA 3854 Query 11741 GTTCACGTACACGCTTCGCTCCAACACCTACGAACATCTCAACGAAGTTTGCGGCAGAAC 11800 ||||| || | || || || || ||||||| ||||||||| | | || | || Sbjct 3853 AGTCACGGACCCTTGAGGCACCGACCCCCACGAACAGCTCAACGAACTCGGATGCCGCAC 3794 Query 11801 ACTGA-ATGAAGGGAACATTAGACTCACCAGCGATGGCTCGAGCGAGGAGAGTCTTACCC 11859 | ||| | |||||| || | ||| || || | || || || || ||||||||||| Sbjct 3793 A-TGAGAAGAAGGGCACGCCTGCCTCCCCGGCCACCGCCCGGGCCAGAAGAGTCTTACCG 3735 Query 11860 GTACCAGGTGCACCAGCGAGAAGGGCGCCACGGGGGATCTTGGCACCACTTCCAAAGTAG 11919 || || || | || | || ||| ||| |||||| || || ||| | ||| Sbjct 3734 GTTCCCGGCGGCCCGACCAGGAGGCAGCCCTTGGGGATTTTCGCTCCAAGCGCCGTGTAC 3675 Query 11920 CGCTCAGGCTTCTTGAGGAAGTCCACAATCTCCTCAAGTTCCTCCTTGGC 11969 ||||| ||||||||||||||||| | ||||| | ||| |||||| Sbjct 3674 TTGTCAGGGTTCTTGAGGAAGTCCACCACCTCCTGCAACTCCAGCTTGGC 3625 >seq2656 Length=42395 Score = 107 bits (118), Expect = 2e-18 Identities = 300/451 (67%), Gaps = 16/451 (4%) Strand=Plus/Plus Query 119208 TAGTCACCCACCCTCTTTTCGAAGAAATTCGTCTTACCATCGAGTGAGATGTTTTCCATA 119267 || || || |||||||| |||||||| || ||||| || | || || ||| ||||| Sbjct 41381 TACTCGCCAACCCTCTTCTCGAAGAAGTTGGTCTTCCCCTGCAGCGATATGAGCTCCATC 41440 Query 119268 AAGTCAAAAGGATTTTTGGAGTTCCAGATTGGTGGTTG--ACCAACTTGTTTCAGAAGAC 119325 |||| || |||||| | | ||||| | | || | | | | ||| || | Sbjct 41441 CAGTCGAACGGATTTGGGACGCCATAGATT--TTGCTGCAATCGAGCGCTCCCAGCAGCC 41498 Query 119326 GATCGGAGACATACTCGATATATTCGGACATCTTTTCCGAATTCATACCTATGAGATTAC 119385 |||||| || ||||||| |||| |||| ||| ||||| |||| || | Sbjct 41499 GATCGGCTACGAACTCGATGTATTGACTCATCAGCTCCCCGTTCATCCCTACAAGCGC-C 41557 Query 119386 ACGGG-AGAGCATCGAGGATGAAGTTCTTCTCGATCTCCACAGCTTCTTTCACGATGGAG 119444 || || ||||| ||| || ||| | | ||| || || || || ||||| |||||||| Sbjct 41558 ACAGGCAGAGCGTCGCAGACGAACTCCCGCTCAATGTCGACCGCCTCTTTGACGATGGAT 41617 Query 119445 TGAATAGTTTCTGTCGATGGT---TTGTTTCTCAAGAG--TTTAAACAACTCTACGGCAA 119499 ||| | ||| ||| || ||||| | | ||| | || | || | ||| | Sbjct 41618 CTAATCCTCTCT-TCG--GGCAACTTGTTGTTGAGGAGGCTGTAGAGAAGGCA--GGCGA 41672 Query 119500 ATTCTTGATGAAGCCCTTCATCCCGAGAGATGAGCTCATTACTGAAGCAAAGTCCAGGCA 119559 | || || || || || || |||||||||||||| || ||| || ||||||| Sbjct 41673 AGTCGCAGTGGAGGCCCTCGTCGCGAGAGATGAGCTCGTTGGAGAACGTGAGGCCAGGCA 41732 Query 119560 TGAGTCCTCTTTTCTTTAGCCAAAAGATGGCACAAAAACTTCCAGAAAAGAAGATGCCCT 119619 ||||||| | ||||| ||||| ||||| || || || || || ||||||||||| | Sbjct 41733 TGAGTCCGCGCTTCTTGAGCCAGAAGATTGCGCAGAAGGAGCCGGAGAAGAAGATGCCTT 41792 Query 119620 CCACACAGGCGAAAGCGAATAGACGCTCAGC 119650 | || |||||||| || | || ||||| || Sbjct 41793 CGACGCAGGCGAAGGCAACGAGGCGCTCGGC 41823 >seq2510 Length=43382 Score = 100 bits (110), Expect = 3e-16 Identities = 153/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 119508 TGAAGCCCTTCATCCCGAGAGATGAGCTCATTACTGAAGCAAAGTCCAGGCATGAGTCCT 119567 || || || || || || ||||||||||| || |||| || ||||||||||| ||| Sbjct 21227 TGGAGTCCCTCGTCACGGGAGATGAGCTCGTTGGAGAAGGTTAGCCCAGGCATGAGGCCT 21168 Query 119568 CTTTTCTTTAGCCAAAAGATGGCACAAAAACTTCCAGAAAAGAAGATGCCCTCCACACAG 119627 | ||||| ||||| ||||||| || || || || |||||||| ||||| || ||| Sbjct 21167 CGCTTCTTGAGCCAGAAGATGGAGCAGAAGGAGCCGGAGAAGAAGATACCCTCGACGCAG 21108 Query 119628 GCGAAAGCGAATAGACGCTCAGCAAAAGGTCGAGACTTGTCGAACCACTTGAGAGCCCAG 119687 || || |||| | ||||| ||||| | | ||| || || ||| || ||||| Sbjct 21107 GCAAAGGCGACGATGCGCTCGGCAAAGGAACTCGACGAGTGGATCCAACGCAGCGCCCAC 21048 Query 119688 TTGGCCTTACGCTCTATGCAGGGGACAGTTTGGATGGC 119725 | |||||| | | ||||||||| || | ||| || Sbjct 21047 TCGGCCTTCTTTCCGACGCAGGGGACGGTCTCGATCGC 21010 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588679406410800