Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eichhornia_20paniculata_20[genbank_20GCA_5F001647135.1_202016-05-02] 40,286 sequences; 571,388,321 total letters Query= NC_018504.1 Length=123876 Score E Sequences producing significant alignments: (Bits) Value seq2385 120 2e-22 seq490 118 8e-22 seq220 111 1e-19 seq410 91.5 1e-13 >seq2385 Length=44452 Score = 120 bits (132), Expect = 2e-22 Identities = 164/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 101254 ACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGC 101313 ||| | ||| | || || || || || || || || ||||| || |||| || | | | Sbjct 34258 ACGGAGAACAAGGTGGAGTGTGGACTCCTTCTGGATGTTGTAGTCAGCGAGGGTGCGGCC 34199 Query 101314 ATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTT 101373 ||| ||||| ||||| ||||| || ||||||||||| || || || || ||||| || || Sbjct 34198 ATCCTCCAACTGCTTGCCTGCGAAGATCAAACGCTGCTGGTCTGGGGGGATGCCCTCCTT 34139 Query 101374 ATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGAC 101433 || || || || || ||| | |||| ||| || || | || || |||||||||| Sbjct 34138 GTCCTGTATCTTGGCCTTGACATTGTCTATAGTATCTGAAGACTCAACCTCAAGAGTGAT 34079 Query 101434 CGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCATGGTTACGCGAAGA 101482 || ||||| || || || || || || ||||||||| | | |||||| Sbjct 34078 TGTCTTGCCAGTCAAGGTCTTCACGAAGATCTGCATGCCTCCACGAAGA 34030 >seq490 Length=81643 Score = 118 bits (130), Expect = 8e-22 Identities = 152/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 101260 AACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTC 101319 ||| | ||| ||||| || || ||||| |||||||| || || | || | |||| || Sbjct 59723 AACCAGATGCAGGGTTGACTCCTTTTGAATATTGTAGTCTGCTAGGGTGCGCCCATCCTC 59664 Query 101320 CAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTG 101379 | ||||| || ||||| || | | |||||| || || |||||||| ||||| || || Sbjct 59663 AAGCTGCTTCCCCGCAAAGATGAGCCTCTGTTGGTCTGGAGGAATGCCCTCTTTGTCCTG 59604 Query 101380 AATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTT 101439 ||||||| || ||| | || | ||||| || | ||| || ||||| || | || || Sbjct 59603 AATTTTTGCCTTGACATTGTCAATGGTGTCTGAAGATTCAACCTCAAGGGTTATGGTCTT 59544 Query 101440 GCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 ||| || | ||| || || ||||||||||| Sbjct 59543 GCCAGTCAGAGTCTTGACGAATATCTGCAT 59514 Score = 111 bits (122), Expect = 1e-19 Identities = 147/204 (72%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 101267 TGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGC 101326 || || || || || ||||| || ||||| || || | || | |||| ||||||||| Sbjct 58804 TGGAGCGTGGACTCCTTTTGAATGTTGTAGTCAGCCAGGGTGCGACCATCCTCCAATTGC 58745 Query 101327 TTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTT 101386 || |||||||| |||| |||||| || || || || || || || || || || || || Sbjct 58744 TTGCCTGCAAAGATCAGACGCTGCTGGTCCGGGGGGATTCCCTCCTTGTCCTGGATCTTG 58685 Query 101387 TGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTT 101446 || ||| | || | ||| || || | || || |||||||||| || ||||| || Sbjct 58684 GCCTTGACATTGTCAATAGTATCTGAAGACTCAACCTCAAGAGTGATTGTCTTGCCTGTC 58625 Query 101447 AAAGTTTTTACAAATATCTGCATG 101470 || || || ||||| ||||||||| Sbjct 58624 AAGGTCTTCACAAAGATCTGCATG 58601 Score = 105 bits (116), Expect = 5e-18 Identities = 145/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 101267 TGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGC 101326 || || |||||||| || || || |||||||| || | || | |||| || | ||| Sbjct 59260 TGGAGTGTAGATTCCTTCTGGATGTTGTAATCAGCAAGGGTGCGTCCATCTTCGAGCTGC 59201 Query 101327 TTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTT 101386 || ||||||||||| | | || || || || |||||||| || || || ||||| ||| Sbjct 59200 TTCCCTGCAAATATGAGTCTTTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGAATCTTT 59141 Query 101387 TGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTT 101446 || || | || | ||||| |||| ||| || ||||| || | || || || || Sbjct 59140 GCCTTGACGTTGTCAATGGTGTCTGACGATTCAACCTCAAGGGTAATAGTCTTACCAGTC 59081 Query 101447 AAAGTTTTTACAAATATCTGCAT 101469 || || || |||||||||||||| Sbjct 59080 AAGGTCTTAACAAATATCTGCAT 59058 >seq220 Length=196394 Score = 111 bits (122), Expect = 1e-19 Identities = 150/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 101261 ACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCC 101320 || || || ||||||||||| || || || ||||| || || | ||| | |||| || Sbjct 149018 ACCAAGTGGAGGGTAGATTCCTTCTGAATGTTGTAGTCAGCAAGAGTGCGCCCATCCTCG 149077 Query 101321 AATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGA 101380 | |||||||| || || || | | ||| ||||| || ||||||||||| || || ||| Sbjct 149078 AGCTGCTTACCAGCGAAGATGAGCCTCTGCTGATCCGGGGGAATGCCTTCCTTGTCCTGA 149137 Query 101381 ATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTG 101440 || || |||||| | || | ||||| || | || || || || |||| ||| ||| Sbjct 149138 ATCTTCGCCTTTACATTGTCGATGGTGTCTGAGCTCTCAACCTCGAGGGTGATCGTCTTG 149197 Query 101441 CCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || || | || || ||||| |||||||| Sbjct 149198 CCAGTGAGGGTCTTGACAAAGATCTGCAT 149226 >seq410 Length=85275 Score = 91.5 bits (100), Expect = 1e-13 Identities = 142/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 101267 TGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGC 101326 ||||| || || || || || || ||||||||||||| || | | || || | ||| Sbjct 46571 TGAAGAGTGGACTCCTTCTGGATGTTGTAATCGGCGAGTGTGCGTCCGTCCTCGAGCTGC 46512 Query 101327 TTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTT 101386 || || || || || | |||||||| || ||||| || || || || || || || || Sbjct 46511 TTGCCGGCGAAGATGAGCCGCTGTTGGTCCGGCGGTATTCCCTCCTTGTCCTGGATCTTC 46452 Query 101387 TGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTT 101446 || || | || | ||||| || | ||||| ||||| |||| ||| || ||||| Sbjct 46451 GCCTTCACGTTGTCGATGGTGTCCGATGACTCCACCTCAAGGGTGATCGTCTTCCCGGTG 46392 Query 101447 AAAGTTTTTACAAATATCTGCAT 101469 | ||| || || || |||||||| Sbjct 46391 AGAGTCTTCACGAAGATCTGCAT 46369 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396083833002102