Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Eichhornia_20paniculata_20[genbank_20GCA_5F001647135.1_202016-05-02]
40,286 sequences; 571,388,321 total letters
Query= NC_018875.1
Length=119082
Score E
Sequences producing significant alignments: (Bits) Value
seq490 114 1e-20
seq2385 93.3 3e-14
seq722 84.2 2e-11
seq2468 82.4 6e-11
>seq490
Length=81643
Score = 114 bits (126), Expect = 1e-20
Identities = 156/218 (72%), Gaps = 0/218 (0%)
Strand=Plus/Minus
Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608
||||| | ||| | || |||||| ||| |||||||| ||||| |||| || | |||
Sbjct 58819 AGCCGAAGCACAAGGTGGAGCGTGGACTCCTTTTGAATGTTGTAGTCAGCCAGGGTGCGA 58760
Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668
| || ||||| ||||| || ||||| ||||| ||||| || |||| ||| | ||||||
Sbjct 58759 CCATCCTCCAATTGCTTGCCTGCAAAGATCAGACGCTGCTGGTCCGGGGGGATTCCCTCC 58700
Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728
||||| ||||| || ||| | | || ||||| | ||| ||||| | ||
Sbjct 58699 TTGTCCTGGATCTTGGCCTTGACATTGTCAATAGTATCTGAAGACTCAACCTCAAGAGTG 58640
Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766
|| || || || ||||| || || ||||| ||||||||
Sbjct 58639 ATTGTCTTGCCTGTCAAGGTCTTCACAAAGATCTGCAT 58602
Score = 96.9 bits (106), Expect = 3e-15
Identities = 136/191 (71%), Gaps = 0/191 (0%)
Strand=Plus/Minus
Query 48576 TCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAAT 48635
|| || || || |||||||||| || | || | || || | |||||| || ||||||
Sbjct 59248 TCCTTCTGGATGTTGTAATCAGCAAGGGTGCGTCCATCTTCGAGCTGCTTCCCTGCAAAT 59189
Query 48636 ATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAA 48695
|| |||| || || |||| ||||| |||||||||||| ||||||| || ||
Sbjct 59188 ATGAGTCTTTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGAATCTTTGCCTTGACGTTG 59129
Query 48696 CCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACA 48755
| | | ||||||| || ||||| | ||||| || || || ||||| || || |||
Sbjct 59128 TCAATGGTGTCTGACGATTCAACCTCAAGGGTAATAGTCTTACCAGTCAAGGTCTTAACA 59069
Query 48756 AAAATCTGCAT 48766
|| ||||||||
Sbjct 59068 AATATCTGCAT 59058
Score = 84.2 bits (92), Expect = 2e-11
Identities = 144/209 (69%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 48558 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCC 48617
|||| ||| || || ||| |||||||||||||| || | ||| | || | || ||
Sbjct 59722 ACCAGATGCAGGGTTGACTCCTTTTGAATATTGTAGTCTGCTAGGGTGCGCCCATCCTCA 59663
Query 48618 AACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTA 48677
| |||||| || ||||| || || | |||||| || | |||| |||||| ||||| |
Sbjct 59662 AGCTGCTTCCCCGCAAAGATGAGCCTCTGTTGGTCTGGAGGAATGCCCTCTTTGTCCTGA 59603
Query 48678 ATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTT 48737
|| ||| || ||| | | | ||||| | || ||||| | || || || ||
Sbjct 59602 ATTTTTGCCTTGACATTGTCAATGGTGTCTGAAGATTCAACCTCAAGGGTTATGGTCTTG 59543
Query 48738 CCCGTCAAAGTTTTTACAAAAATCTGCAT 48766
|| |||| ||| || || || ||||||||
Sbjct 59542 CCAGTCAGAGTCTTGACGAATATCTGCAT 59514
>seq2385
Length=44452
Score = 93.3 bits (102), Expect = 3e-14
Identities = 146/209 (70%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 48558 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCC 48617
|||| ||| || || ||| |||||||||||||| || | ||| | || |||| ||
Sbjct 35086 ACCAGATGCAGGGTCGACTCCTTTTGAATATTGTAGTCTGCTAGGGTGCGCCCGTCCTCA 35027
Query 48618 AACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTA 48677
| |||||| || ||||| || || | ||| || |||| |||| |||||| ||||| |
Sbjct 35026 AGCTGCTTCCCAGCAAAGATGAGCCTCTGCTGGTCCGGAGGAATGCCCTCTTTGTCCTGA 34967
Query 48678 ATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTT 48737
|||||| || || | | | ||||| | || ||||| | ||||| || ||
Sbjct 34966 ATCTTTGCCTTGACGTTGTCAATGGTGTCTGAAGATTCAACCTCAAGGGTAATGGTCTTG 34907
Query 48738 CCCGTCAAAGTTTTTACAAAAATCTGCAT 48766
|| |||| || || ||||| ||||||||
Sbjct 34906 CCAGTCAGGGTCTTGACAAAGATCTGCAT 34878
Score = 82.4 bits (90), Expect = 6e-11
Identities = 140/203 (69%), Gaps = 0/203 (0%)
Strand=Plus/Minus
Query 48564 TGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGC 48623
|| || ||| ||| || || || ||||| |||| || | || | || |||||||||
Sbjct 34245 TGGAGTGTGGACTCCTTCTGGATGTTGTAGTCAGCGAGGGTGCGGCCATCCTCCAACTGC 34186
Query 48624 TTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTT 48683
|| || || || |||| ||||| || || | ||| | |||||||||||| |||||
Sbjct 34185 TTGCCTGCGAAGATCAAACGCTGCTGGTCTGGGGGGATGCCCTCCTTGTCCTGTATCTTG 34126
Query 48684 TGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTC 48743
|| ||| | | || ||||| | ||| ||||| | || || || || || |||
Sbjct 34125 GCCTTGACATTGTCTATAGTATCTGAAGACTCAACCTCAAGAGTGATTGTCTTGCCAGTC 34066
Query 48744 AAAGTTTTTACAAAAATCTGCAT 48766
|| || || || || ||||||||
Sbjct 34065 AAGGTCTTCACGAAGATCTGCAT 34043
>seq722
Length=72705
Score = 84.2 bits (92), Expect = 2e-11
Identities = 106/146 (73%), Gaps = 0/146 (0%)
Strand=Plus/Minus
Query 9094 TGAGCAATCCTGTCCCCCTTATTCACGACAAAGTCTGTGTCGGAATGATTGAACAGCACC 9153
|| ||||||| |||||| ||||| | ||||| ||| || || |||||||||||
Sbjct 68560 TGCGCAATCCGGTCCCCGGCCTTCACCTCGAAGTCCAGGTCCGAGTGGTTGAACAGCACG 68501
Query 9154 ACTCCCACGTTACCCCTGTAATCCTCATCGATCACACCAGCACCCACGTCGATGAAGTGC 9213
|| || || ||||||||||| | |||||||| || || |||||| |||| |||||
Sbjct 68500 ACACCGACCGGGCCCCTGTAATCGGCGTCGATCACGCCGGCGCCCACGCCGATCGAGTGC 68441
Query 9214 TTGACCGCTAGTCCAGAGCGGGGCGC 9239
|| ||| || || || | |||||
Sbjct 68440 TTCCACGCCAGCCCCGATCTCGGCGC 68415
>seq2468
Length=52418
Score = 82.4 bits (90), Expect = 6e-11
Identities = 141/205 (69%), Gaps = 0/205 (0%)
Strand=Plus/Minus
Query 48563 ATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTG 48622
||| || ||| ||| || || || ||||| || | || | || |||| || | |||
Sbjct 10120 ATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCAAGGGTGCGCCCGTCTTCAAGCTG 10061
Query 48623 CTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTT 48682
||| ||||| || || || ||||| || |||| || | |||||||||||| |||||
Sbjct 10060 CTTGCCGGCGAAGATGAGCCGCTGCTGGTCCGGCGGGATGCCCTCCTTGTCCTGGATCTT 10001
Query 48683 TTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGT 48742
|| || | | | || |||| ||||||||| | || ||||| || |||||
Sbjct 10000 CGCCTTGACGTTGTCGATGGTGTCGGACGACTCCACCTCGAGGGTGATCGTCTTGCCCGT 9941
Query 48743 CAAAGTTTTTACAAAAATCTGCATC 48767
| || || ||||| |||||||||
Sbjct 9940 GAGGGTCTTCACAAAGATCTGCATC 9916
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 380750565114378
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |