Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eichhornia_20paniculata_20[genbank_20GCA_5F001647135.1_202016-05-02] 40,286 sequences; 571,388,321 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq490 114 1e-20 seq2385 93.3 3e-14 seq722 84.2 2e-11 seq2468 82.4 6e-11 >seq490 Length=81643 Score = 114 bits (126), Expect = 1e-20 Identities = 156/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 ||||| | ||| | || |||||| ||| |||||||| ||||| |||| || | ||| Sbjct 58819 AGCCGAAGCACAAGGTGGAGCGTGGACTCCTTTTGAATGTTGTAGTCAGCCAGGGTGCGA 58760 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 | || ||||| ||||| || ||||| ||||| ||||| || |||| ||| | |||||| Sbjct 58759 CCATCCTCCAATTGCTTGCCTGCAAAGATCAGACGCTGCTGGTCCGGGGGGATTCCCTCC 58700 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| ||||| || ||| | | || ||||| | ||| ||||| | || Sbjct 58699 TTGTCCTGGATCTTGGCCTTGACATTGTCAATAGTATCTGAAGACTCAACCTCAAGAGTG 58640 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || || || || ||||| || || ||||| |||||||| Sbjct 58639 ATTGTCTTGCCTGTCAAGGTCTTCACAAAGATCTGCAT 58602 Score = 96.9 bits (106), Expect = 3e-15 Identities = 136/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 48576 TCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAAT 48635 || || || || |||||||||| || | || | || || | |||||| || |||||| Sbjct 59248 TCCTTCTGGATGTTGTAATCAGCAAGGGTGCGTCCATCTTCGAGCTGCTTCCCTGCAAAT 59189 Query 48636 ATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAA 48695 || |||| || || |||| ||||| |||||||||||| ||||||| || || Sbjct 59188 ATGAGTCTTTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGAATCTTTGCCTTGACGTTG 59129 Query 48696 CCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACA 48755 | | | ||||||| || ||||| | ||||| || || || ||||| || || ||| Sbjct 59128 TCAATGGTGTCTGACGATTCAACCTCAAGGGTAATAGTCTTACCAGTCAAGGTCTTAACA 59069 Query 48756 AAAATCTGCAT 48766 || |||||||| Sbjct 59068 AATATCTGCAT 59058 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 48558 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCC 48617 |||| ||| || || ||| |||||||||||||| || | ||| | || | || || Sbjct 59722 ACCAGATGCAGGGTTGACTCCTTTTGAATATTGTAGTCTGCTAGGGTGCGCCCATCCTCA 59663 Query 48618 AACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTA 48677 | |||||| || ||||| || || | |||||| || | |||| |||||| ||||| | Sbjct 59662 AGCTGCTTCCCCGCAAAGATGAGCCTCTGTTGGTCTGGAGGAATGCCCTCTTTGTCCTGA 59603 Query 48678 ATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTT 48737 || ||| || ||| | | | ||||| | || ||||| | || || || || Sbjct 59602 ATTTTTGCCTTGACATTGTCAATGGTGTCTGAAGATTCAACCTCAAGGGTTATGGTCTTG 59543 Query 48738 CCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || |||| ||| || || || |||||||| Sbjct 59542 CCAGTCAGAGTCTTGACGAATATCTGCAT 59514 >seq2385 Length=44452 Score = 93.3 bits (102), Expect = 3e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 48558 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCC 48617 |||| ||| || || ||| |||||||||||||| || | ||| | || |||| || Sbjct 35086 ACCAGATGCAGGGTCGACTCCTTTTGAATATTGTAGTCTGCTAGGGTGCGCCCGTCCTCA 35027 Query 48618 AACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTA 48677 | |||||| || ||||| || || | ||| || |||| |||| |||||| ||||| | Sbjct 35026 AGCTGCTTCCCAGCAAAGATGAGCCTCTGCTGGTCCGGAGGAATGCCCTCTTTGTCCTGA 34967 Query 48678 ATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTT 48737 |||||| || || | | | ||||| | || ||||| | ||||| || || Sbjct 34966 ATCTTTGCCTTGACGTTGTCAATGGTGTCTGAAGATTCAACCTCAAGGGTAATGGTCTTG 34907 Query 48738 CCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || |||| || || ||||| |||||||| Sbjct 34906 CCAGTCAGGGTCTTGACAAAGATCTGCAT 34878 Score = 82.4 bits (90), Expect = 6e-11 Identities = 140/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 48564 TGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGC 48623 || || ||| ||| || || || ||||| |||| || | || | || ||||||||| Sbjct 34245 TGGAGTGTGGACTCCTTCTGGATGTTGTAGTCAGCGAGGGTGCGGCCATCCTCCAACTGC 34186 Query 48624 TTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTT 48683 || || || || |||| ||||| || || | ||| | |||||||||||| ||||| Sbjct 34185 TTGCCTGCGAAGATCAAACGCTGCTGGTCTGGGGGGATGCCCTCCTTGTCCTGTATCTTG 34126 Query 48684 TGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTC 48743 || ||| | | || ||||| | ||| ||||| | || || || || || ||| Sbjct 34125 GCCTTGACATTGTCTATAGTATCTGAAGACTCAACCTCAAGAGTGATTGTCTTGCCAGTC 34066 Query 48744 AAAGTTTTTACAAAAATCTGCAT 48766 || || || || || |||||||| Sbjct 34065 AAGGTCTTCACGAAGATCTGCAT 34043 >seq722 Length=72705 Score = 84.2 bits (92), Expect = 2e-11 Identities = 106/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 9094 TGAGCAATCCTGTCCCCCTTATTCACGACAAAGTCTGTGTCGGAATGATTGAACAGCACC 9153 || ||||||| |||||| ||||| | ||||| ||| || || ||||||||||| Sbjct 68560 TGCGCAATCCGGTCCCCGGCCTTCACCTCGAAGTCCAGGTCCGAGTGGTTGAACAGCACG 68501 Query 9154 ACTCCCACGTTACCCCTGTAATCCTCATCGATCACACCAGCACCCACGTCGATGAAGTGC 9213 || || || ||||||||||| | |||||||| || || |||||| |||| ||||| Sbjct 68500 ACACCGACCGGGCCCCTGTAATCGGCGTCGATCACGCCGGCGCCCACGCCGATCGAGTGC 68441 Query 9214 TTGACCGCTAGTCCAGAGCGGGGCGC 9239 || ||| || || || | ||||| Sbjct 68440 TTCCACGCCAGCCCCGATCTCGGCGC 68415 >seq2468 Length=52418 Score = 82.4 bits (90), Expect = 6e-11 Identities = 141/205 (69%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 48563 ATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTG 48622 ||| || ||| ||| || || || ||||| || | || | || |||| || | ||| Sbjct 10120 ATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCAAGGGTGCGCCCGTCTTCAAGCTG 10061 Query 48623 CTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTT 48682 ||| ||||| || || || ||||| || |||| || | |||||||||||| ||||| Sbjct 10060 CTTGCCGGCGAAGATGAGCCGCTGCTGGTCCGGCGGGATGCCCTCCTTGTCCTGGATCTT 10001 Query 48683 TTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGT 48742 || || | | | || |||| ||||||||| | || ||||| || ||||| Sbjct 10000 CGCCTTGACGTTGTCGATGGTGTCGGACGACTCCACCTCGAGGGTGATCGTCTTGCCCGT 9941 Query 48743 CAAAGTTTTTACAAAAATCTGCATC 48767 | || || ||||| ||||||||| Sbjct 9940 GAGGGTCTTCACAAAGATCTGCATC 9916 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380750565114378