Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eichhornia_20paniculata_20[genbank_20GCA_5F001647135.1_202016-05-02] 40,286 sequences; 571,388,321 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq32078 154 3e-32 seq2510 154 3e-32 seq7765 150 3e-31 seq2656 143 5e-29 >seq32078 Length=1569 Score = 154 bits (170), Expect = 3e-32 Identities = 248/353 (70%), Gaps = 5/353 (1%) Strand=Plus/Plus Query 25690 TTCTACGGTTTCCAGATGGCCATCGAAAATGTGCACTCTGAGGTGTATGCCAAGCTTCTG 25749 |||||||| |||||||| |||||||| || | ||||| ||| |||| || || || Sbjct 811 TTCTACGGCTTCCAGATCGCCATCGAGAACATCCACTCCGAGATGTACTCCCTCCTCCTC 870 Query 25750 ATGACGTACATTACAGACGTCGCCGAGAGAGATCGGCTGTTTGGTGCCATCGAGCACATA 25809 ||| ||||| | ||| || |||| || || || | || ||||| | | Sbjct 871 GAGACCTACATCAAGGACTCCGAGGAGAAGTCGCGCCTCTTCCGCGCGATCGAAACCGTC 930 Query 25810 CCCAGCATCAAGAGGAAGGCGCGGTGGGCCATGAAGTGGATCAACAGCCAGAGCGCTACG 25869 ||| || || | |||||| ||||| || |||||| || |||| | Sbjct 931 CCCTGCGTCGGAAAGAAGGCCGACTGGGCTCTGCGTTGGATCCACTCGTCGAGCTCC--- 987 Query 25870 TTTGGCGAGCGGCTGGTAGCCTTTGC-TGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTT 25928 |||| |||||| | || |||||||| ||| || ||||| ||||| ||| ||| || || Sbjct 988 TTTGCCGAGCGCATCGTCGCCTTTGCCTGC-GTCGAGGGTATCTTCTTCTCCGGCTCCTT 1046 Query 25929 TGCGGCCATCTTCTGGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGA 25988 | ||||||||||||||||| || ||| |||||| ||||| ||| |||||||| Sbjct 1047 TTGCTCCATCTTCTGGCTCAAGAAGCGGGGCCTCATGCCTGGGCTCACCTTCTCCAACGA 1106 Query 25989 GCTCATCAGCAGGGACGAGGGTCTCCACAGAGATTTTGCCTGCCTGCTCTACA 26041 ||||||| | | ||||||||||||||| | || || |||||||| ||||||| Sbjct 1107 GCTCATCTCCCGTGACGAGGGTCTCCACTGCGACTTCGCCTGCCTCCTCTACA 1159 >seq2510 Length=43382 Score = 154 bits (170), Expect = 3e-32 Identities = 250/354 (71%), Gaps = 7/354 (2%) Strand=Plus/Plus Query 25690 TTCTACGGTTTCCAGATGGCCATCGAAAATGTGCACTCTGAGGTGTATGCCAAGCTTCTG 25749 |||||||| |||||||| |||||||| || | ||||| ||| |||| || || || Sbjct 20905 TTCTACGGCTTCCAGATCGCCATCGAGAACATCCACTCCGAGATGTACTCCCTCCTCCTC 20964 Query 25750 ATGACGTACATTACAGACGTCGCCGAGAGAGATCGGCTGTTTGGTGCCATCGAGCACATA 25809 ||| ||||| | ||| || |||| || || || | || |||||| | | Sbjct 20965 GAGACCTACATCAAGGACTCCGAGGAGAAGTCGCGCCTCTTCCGCGCGATCGAGACCGTC 21024 Query 25810 CCCAGCATCAAGAGGAAGGCGCGGTGGGCCATGAAGTGGATCAACAGCCAGAGCGCTACG 25869 ||| || || | |||||| |||||| || |||||| || ||| | | Sbjct 21025 CCCTGCGTCGGAAAGAAGGCCGAGTGGGCGCTGCGTTGGATCCACTCGTCGAG---TTCC 21081 Query 25870 TTTGGCGAGCGGCTGGTAGCCTTTGC-TGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTT 25928 |||| |||||| | || |||||||| ||| || ||||| ||||| ||| ||| || || Sbjct 21082 TTTGCCGAGCGCATCGTCGCCTTTGCCTGC-GTCGAGGGTATCTTCTTCTCCGGCTCCTT 21140 Query 25929 -TGCGGCCATCTTCTGGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACG 25987 ||| ||||||||||||||||| || || |||||| ||||| ||| ||||||| Sbjct 21141 CTGCT-CCATCTTCTGGCTCAAGAAGCGAGGCCTCATGCCTGGGCTAACCTTCTCCAACG 21199 Query 25988 AGCTCATCAGCAGGGACGAGGGTCTCCACAGAGATTTTGCCTGCCTGCTCTACA 26041 |||||||| | | |||||||| |||||| | || || |||||||| ||||||| Sbjct 21200 AGCTCATCTCCCGTGACGAGGGACTCCACTGCGACTTCGCCTGCCTCCTCTACA 21253 >seq7765 Length=42474 Score = 150 bits (166), Expect = 3e-31 Identities = 247/353 (70%), Gaps = 5/353 (1%) Strand=Plus/Minus Query 25690 TTCTACGGTTTCCAGATGGCCATCGAAAATGTGCACTCTGAGGTGTATGCCAAGCTTCTG 25749 |||||||| |||||||| |||||||| || | ||||| ||| |||| || || || Sbjct 40372 TTCTACGGCTTCCAGATCGCCATCGAGAACATCCACTCCGAGATGTACTCCCTCCTCCTC 40313 Query 25750 ATGACGTACATTACAGACGTCGCCGAGAGAGATCGGCTGTTTGGTGCCATCGAGCACATA 25809 ||| ||||| | ||| || |||| || || || | || ||||| | | Sbjct 40312 GAGACCTACATCAAGGACTCCGAGGAGAAGTCGCGCCTCTTCCGCGCGATCGAAACCGTC 40253 Query 25810 CCCAGCATCAAGAGGAAGGCGCGGTGGGCCATGAAGTGGATCAACAGCCAGAGCGCTACG 25869 ||| || || | |||||| ||||| || |||||| || |||| | Sbjct 40252 CCCTGCGTCGGAAAGAAGGCCGACTGGGCTCTGCGTTGGATCCACTCGTCGAGCTCC--- 40196 Query 25870 TTTGGCGAGCGGCTGGTAGCCTTTGC-TGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTT 25928 |||| |||||| | || |||||||| ||| || ||||| ||||| ||| ||| || || Sbjct 40195 TTTGCCGAGCGCATCGTCGCCTTTGCCTGC-GTCGAGGGTATCTTCTTCTCCGGCTCCTT 40137 Query 25929 TGCGGCCATCTTCTGGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGA 25988 | ||||||||||||||||| || ||| |||||| ||||| ||| |||||||| Sbjct 40136 TTGCTCCATCTTCTGGCTCAAGAAGCGGGGCCTCATGCCTGGGCTCACCTTCTCCAACGA 40077 Query 25989 GCTCATCAGCAGGGACGAGGGTCTCCACAGAGATTTTGCCTGCCTGCTCTACA 26041 ||||||| | | |||||||| |||||| | || || |||||||| ||||||| Sbjct 40076 GCTCATCTCCCGTGACGAGGGACTCCACTGCGACTTCGCCTGCCTCCTCTACA 40024 >seq2656 Length=42395 Score = 143 bits (158), Expect = 5e-29 Identities = 479/736 (65%), Gaps = 24/736 (3%) Strand=Plus/Minus Query 25595 ACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGAGAT 25654 |||| | || ||||| || ||||| || || || || |||||| || || | | Sbjct 42098 ACGTCCTCGCCTTCTTCGCCGCCTCCGACGGCATCGTTCTCGAGAACCTCGCCGCCCGGT 42039 Query 25655 TCACCAGGGAAGTGCAGTACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGATGGCCATCG 25714 ||| | || |||||| | |||||| |||||||| |||||||| ||||||| Sbjct 42038 TCATGAACGACGTGCAGCTCCCGGAGGCGCGCGCCTTCTACGGGTTCCAGATTGCCATCG 41979 Query 25715 AAAATGTGCACTCTGAGGTGTATGCCAAGCTTCTGATGACGTACATTACAGACGTCGCCG 25774 | || | ||||| ||| |||| || || || | | || || | ||| | || Sbjct 41978 AGAACATCCACTCCGAGATGTACTCCCTCCTCCTCGAGTCTTATATCAAGGACCCGGACG 41919 Query 25775 AGAGAGATCGGC-TGTTTGGTGCCATCGAGCACATACCCAGCATCAAGAGGAAGGCGCGG 25833 ||| ||| | || | || | || |||||| | | ||| || || | |||||| Sbjct 41918 AGA-AGACCCGCCTCTTCCGGGCGATCGAGACCGTCCCCTGCGTCGGCAAGAAGGCCGAC 41860 Query 25834 TGGGCCATGAAGTGGATCAACA-GCCAGAGCGCTACGTTTGGCGAGCGGCTGGTAGCCTT 25892 ||||| | |||||| | | || ||||| |||||| || || ||||| Sbjct 41859 TGGGCGGTCCGCTGGATCCGTTCGTCGGATTCCTACGC----CGAGCGCCTCGTTGCCTT 41804 Query 25893 TGC-TGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTT-TGCGGCCATCTTCTGGCTCAAG 25950 || ||| || || |||||||| ||| ||| || || |||| | ||||||||||||||| Sbjct 41803 CGCCTGC-GTCGAAGGCATCTTCTTCTCCGGCTCCTTCTGCG-CAATCTTCTGGCTCAAG 41746 Query 25951 CAGAAGGGGAC-CATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGGACGAGGG 26009 || | |||| |||||| || || || ||||||||||||||| | |||||||| Sbjct 41745 AAGC-GCGGACTCATGCCTGGCCTCACGTTCTCCAACGAGCTCATCTCTCGCGACGAGGG 41687 Query 26010 TCTCCACAGAGATTTTGCCTGCCTGCTCTACACGGGCCACTTGCTCCACAA-ACCTT--C 26066 |||||| | || || |||||||| ||||||| ||| | ||| |||| | || | Sbjct 41686 CCTCCACTGCGACTTCGCCTGCCTTCTCTACA---GCC---TCCTCAACAACAAGTTGCC 41633 Query 26067 TCAAGAGACCGTCTACA-GTATCATCAAAGAGGCTGTGGAGATCGAGAAGGAGTTTCNNN 26125 |||||| | || | ||| |||||||||| || || || ||| |||||| Sbjct 41632 CGAAGAGA-GGATTAGATCCATCGTCAAAGAGGCGGTCGACATTGAGCGGGAGTTCGTCT 41574 Query 26126 NNNNNNNNNNNNNNNNNNNNNNNNTGGGCATGAACAACAGACTCATGAGCCAATACATTG 26185 | || |||||| || ||||| |||||||| | Sbjct 41573 GCGACGCTCTGCCTGTGGCGCTTGTAGGGATGAACGGGGAGCTGATGAGTCAATACATCG 41514 Query 26186 AGTATGTGGCCGACCATCTGCTGTGCCAGCTGGGACTCGCCAGACTCTACAGTACGCCTA 26245 ||| || ||||| | |||||| | ||| | | || | |||| | || | Sbjct 41513 AGTTCGTAGCCGATCGGCTGCTGGGAGCGCTCGATTGCAGCAAAATCTATGGCGTCCCAA 41454 Query 26246 ACCCGTTCGACTTTATGGAAAACATATCGTTGGAAGGGAAGACCAACTTCTTTGAAAAGA 26305 | |||||||||| ||||| ||||||| || | ||||||||||||||||| || |||| Sbjct 41453 ATCCGTTCGACTGGATGGAGCTCATATCGCTGCAGGGGAAGACCAACTTCTTCGAGAAGA 41394 Query 26306 GGGTCGGCGACTATCA 26321 |||| ||||| || || Sbjct 41393 GGGTTGGCGAGTACCA 41378 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928377056979840