Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Eichhornia_20paniculata_20[genbank_20GCA_5F001647135.1_202016-05-02]
40,286 sequences; 571,388,321 total letters
Query= NC_019495.1
Length=290304
Score E
Sequences producing significant alignments: (Bits) Value
seq32078 154 3e-32
seq2510 154 3e-32
seq7765 150 3e-31
seq2656 143 5e-29
>seq32078
Length=1569
Score = 154 bits (170), Expect = 3e-32
Identities = 248/353 (70%), Gaps = 5/353 (1%)
Strand=Plus/Plus
Query 25690 TTCTACGGTTTCCAGATGGCCATCGAAAATGTGCACTCTGAGGTGTATGCCAAGCTTCTG 25749
|||||||| |||||||| |||||||| || | ||||| ||| |||| || || ||
Sbjct 811 TTCTACGGCTTCCAGATCGCCATCGAGAACATCCACTCCGAGATGTACTCCCTCCTCCTC 870
Query 25750 ATGACGTACATTACAGACGTCGCCGAGAGAGATCGGCTGTTTGGTGCCATCGAGCACATA 25809
||| ||||| | ||| || |||| || || || | || ||||| | |
Sbjct 871 GAGACCTACATCAAGGACTCCGAGGAGAAGTCGCGCCTCTTCCGCGCGATCGAAACCGTC 930
Query 25810 CCCAGCATCAAGAGGAAGGCGCGGTGGGCCATGAAGTGGATCAACAGCCAGAGCGCTACG 25869
||| || || | |||||| ||||| || |||||| || |||| |
Sbjct 931 CCCTGCGTCGGAAAGAAGGCCGACTGGGCTCTGCGTTGGATCCACTCGTCGAGCTCC--- 987
Query 25870 TTTGGCGAGCGGCTGGTAGCCTTTGC-TGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTT 25928
|||| |||||| | || |||||||| ||| || ||||| ||||| ||| ||| || ||
Sbjct 988 TTTGCCGAGCGCATCGTCGCCTTTGCCTGC-GTCGAGGGTATCTTCTTCTCCGGCTCCTT 1046
Query 25929 TGCGGCCATCTTCTGGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGA 25988
| ||||||||||||||||| || ||| |||||| ||||| ||| ||||||||
Sbjct 1047 TTGCTCCATCTTCTGGCTCAAGAAGCGGGGCCTCATGCCTGGGCTCACCTTCTCCAACGA 1106
Query 25989 GCTCATCAGCAGGGACGAGGGTCTCCACAGAGATTTTGCCTGCCTGCTCTACA 26041
||||||| | | ||||||||||||||| | || || |||||||| |||||||
Sbjct 1107 GCTCATCTCCCGTGACGAGGGTCTCCACTGCGACTTCGCCTGCCTCCTCTACA 1159
>seq2510
Length=43382
Score = 154 bits (170), Expect = 3e-32
Identities = 250/354 (71%), Gaps = 7/354 (2%)
Strand=Plus/Plus
Query 25690 TTCTACGGTTTCCAGATGGCCATCGAAAATGTGCACTCTGAGGTGTATGCCAAGCTTCTG 25749
|||||||| |||||||| |||||||| || | ||||| ||| |||| || || ||
Sbjct 20905 TTCTACGGCTTCCAGATCGCCATCGAGAACATCCACTCCGAGATGTACTCCCTCCTCCTC 20964
Query 25750 ATGACGTACATTACAGACGTCGCCGAGAGAGATCGGCTGTTTGGTGCCATCGAGCACATA 25809
||| ||||| | ||| || |||| || || || | || |||||| | |
Sbjct 20965 GAGACCTACATCAAGGACTCCGAGGAGAAGTCGCGCCTCTTCCGCGCGATCGAGACCGTC 21024
Query 25810 CCCAGCATCAAGAGGAAGGCGCGGTGGGCCATGAAGTGGATCAACAGCCAGAGCGCTACG 25869
||| || || | |||||| |||||| || |||||| || ||| | |
Sbjct 21025 CCCTGCGTCGGAAAGAAGGCCGAGTGGGCGCTGCGTTGGATCCACTCGTCGAG---TTCC 21081
Query 25870 TTTGGCGAGCGGCTGGTAGCCTTTGC-TGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTT 25928
|||| |||||| | || |||||||| ||| || ||||| ||||| ||| ||| || ||
Sbjct 21082 TTTGCCGAGCGCATCGTCGCCTTTGCCTGC-GTCGAGGGTATCTTCTTCTCCGGCTCCTT 21140
Query 25929 -TGCGGCCATCTTCTGGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACG 25987
||| ||||||||||||||||| || || |||||| ||||| ||| |||||||
Sbjct 21141 CTGCT-CCATCTTCTGGCTCAAGAAGCGAGGCCTCATGCCTGGGCTAACCTTCTCCAACG 21199
Query 25988 AGCTCATCAGCAGGGACGAGGGTCTCCACAGAGATTTTGCCTGCCTGCTCTACA 26041
|||||||| | | |||||||| |||||| | || || |||||||| |||||||
Sbjct 21200 AGCTCATCTCCCGTGACGAGGGACTCCACTGCGACTTCGCCTGCCTCCTCTACA 21253
>seq7765
Length=42474
Score = 150 bits (166), Expect = 3e-31
Identities = 247/353 (70%), Gaps = 5/353 (1%)
Strand=Plus/Minus
Query 25690 TTCTACGGTTTCCAGATGGCCATCGAAAATGTGCACTCTGAGGTGTATGCCAAGCTTCTG 25749
|||||||| |||||||| |||||||| || | ||||| ||| |||| || || ||
Sbjct 40372 TTCTACGGCTTCCAGATCGCCATCGAGAACATCCACTCCGAGATGTACTCCCTCCTCCTC 40313
Query 25750 ATGACGTACATTACAGACGTCGCCGAGAGAGATCGGCTGTTTGGTGCCATCGAGCACATA 25809
||| ||||| | ||| || |||| || || || | || ||||| | |
Sbjct 40312 GAGACCTACATCAAGGACTCCGAGGAGAAGTCGCGCCTCTTCCGCGCGATCGAAACCGTC 40253
Query 25810 CCCAGCATCAAGAGGAAGGCGCGGTGGGCCATGAAGTGGATCAACAGCCAGAGCGCTACG 25869
||| || || | |||||| ||||| || |||||| || |||| |
Sbjct 40252 CCCTGCGTCGGAAAGAAGGCCGACTGGGCTCTGCGTTGGATCCACTCGTCGAGCTCC--- 40196
Query 25870 TTTGGCGAGCGGCTGGTAGCCTTTGC-TGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTT 25928
|||| |||||| | || |||||||| ||| || ||||| ||||| ||| ||| || ||
Sbjct 40195 TTTGCCGAGCGCATCGTCGCCTTTGCCTGC-GTCGAGGGTATCTTCTTCTCCGGCTCCTT 40137
Query 25929 TGCGGCCATCTTCTGGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGA 25988
| ||||||||||||||||| || ||| |||||| ||||| ||| ||||||||
Sbjct 40136 TTGCTCCATCTTCTGGCTCAAGAAGCGGGGCCTCATGCCTGGGCTCACCTTCTCCAACGA 40077
Query 25989 GCTCATCAGCAGGGACGAGGGTCTCCACAGAGATTTTGCCTGCCTGCTCTACA 26041
||||||| | | |||||||| |||||| | || || |||||||| |||||||
Sbjct 40076 GCTCATCTCCCGTGACGAGGGACTCCACTGCGACTTCGCCTGCCTCCTCTACA 40024
>seq2656
Length=42395
Score = 143 bits (158), Expect = 5e-29
Identities = 479/736 (65%), Gaps = 24/736 (3%)
Strand=Plus/Minus
Query 25595 ACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGAGAT 25654
|||| | || ||||| || ||||| || || || || |||||| || || | |
Sbjct 42098 ACGTCCTCGCCTTCTTCGCCGCCTCCGACGGCATCGTTCTCGAGAACCTCGCCGCCCGGT 42039
Query 25655 TCACCAGGGAAGTGCAGTACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGATGGCCATCG 25714
||| | || |||||| | |||||| |||||||| |||||||| |||||||
Sbjct 42038 TCATGAACGACGTGCAGCTCCCGGAGGCGCGCGCCTTCTACGGGTTCCAGATTGCCATCG 41979
Query 25715 AAAATGTGCACTCTGAGGTGTATGCCAAGCTTCTGATGACGTACATTACAGACGTCGCCG 25774
| || | ||||| ||| |||| || || || | | || || | ||| | ||
Sbjct 41978 AGAACATCCACTCCGAGATGTACTCCCTCCTCCTCGAGTCTTATATCAAGGACCCGGACG 41919
Query 25775 AGAGAGATCGGC-TGTTTGGTGCCATCGAGCACATACCCAGCATCAAGAGGAAGGCGCGG 25833
||| ||| | || | || | || |||||| | | ||| || || | ||||||
Sbjct 41918 AGA-AGACCCGCCTCTTCCGGGCGATCGAGACCGTCCCCTGCGTCGGCAAGAAGGCCGAC 41860
Query 25834 TGGGCCATGAAGTGGATCAACA-GCCAGAGCGCTACGTTTGGCGAGCGGCTGGTAGCCTT 25892
||||| | |||||| | | || ||||| |||||| || || |||||
Sbjct 41859 TGGGCGGTCCGCTGGATCCGTTCGTCGGATTCCTACGC----CGAGCGCCTCGTTGCCTT 41804
Query 25893 TGC-TGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTT-TGCGGCCATCTTCTGGCTCAAG 25950
|| ||| || || |||||||| ||| ||| || || |||| | |||||||||||||||
Sbjct 41803 CGCCTGC-GTCGAAGGCATCTTCTTCTCCGGCTCCTTCTGCG-CAATCTTCTGGCTCAAG 41746
Query 25951 CAGAAGGGGAC-CATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGGACGAGGG 26009
|| | |||| |||||| || || || ||||||||||||||| | ||||||||
Sbjct 41745 AAGC-GCGGACTCATGCCTGGCCTCACGTTCTCCAACGAGCTCATCTCTCGCGACGAGGG 41687
Query 26010 TCTCCACAGAGATTTTGCCTGCCTGCTCTACACGGGCCACTTGCTCCACAA-ACCTT--C 26066
|||||| | || || |||||||| ||||||| ||| | ||| |||| | || |
Sbjct 41686 CCTCCACTGCGACTTCGCCTGCCTTCTCTACA---GCC---TCCTCAACAACAAGTTGCC 41633
Query 26067 TCAAGAGACCGTCTACA-GTATCATCAAAGAGGCTGTGGAGATCGAGAAGGAGTTTCNNN 26125
|||||| | || | ||| |||||||||| || || || ||| ||||||
Sbjct 41632 CGAAGAGA-GGATTAGATCCATCGTCAAAGAGGCGGTCGACATTGAGCGGGAGTTCGTCT 41574
Query 26126 NNNNNNNNNNNNNNNNNNNNNNNNTGGGCATGAACAACAGACTCATGAGCCAATACATTG 26185
| || |||||| || ||||| |||||||| |
Sbjct 41573 GCGACGCTCTGCCTGTGGCGCTTGTAGGGATGAACGGGGAGCTGATGAGTCAATACATCG 41514
Query 26186 AGTATGTGGCCGACCATCTGCTGTGCCAGCTGGGACTCGCCAGACTCTACAGTACGCCTA 26245
||| || ||||| | |||||| | ||| | | || | |||| | || |
Sbjct 41513 AGTTCGTAGCCGATCGGCTGCTGGGAGCGCTCGATTGCAGCAAAATCTATGGCGTCCCAA 41454
Query 26246 ACCCGTTCGACTTTATGGAAAACATATCGTTGGAAGGGAAGACCAACTTCTTTGAAAAGA 26305
| |||||||||| ||||| ||||||| || | ||||||||||||||||| || ||||
Sbjct 41453 ATCCGTTCGACTGGATGGAGCTCATATCGCTGCAGGGGAAGACCAACTTCTTCGAGAAGA 41394
Query 26306 GGGTCGGCGACTATCA 26321
|||| ||||| || ||
Sbjct 41393 GGGTTGGCGAGTACCA 41378
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 928377056979840
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |