Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eichhornia_20paniculata_20[genbank_20GCA_5F001647135.1_202016-05-02] 40,286 sequences; 571,388,321 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq4174 140 4e-28 seq4514 138 1e-27 seq70 138 1e-27 seq32078 132 6e-26 seq7765 129 7e-25 seq2510 127 2e-24 seq2656 118 1e-21 >seq4174 Length=33674 Score = 140 bits (154), Expect = 4e-28 Identities = 248/362 (69%), Gaps = 0/362 (0%) Strand=Plus/Minus Query 175315 CCAGGTACGGGAAAGACCCTCCTCGCCCGAGCCATCGCGGGTGAATCAAATGTCCCATTC 175374 ||||| || |||||||| || || || ||| || || ||||| | |||||||| Sbjct 23305 CCAGGGACTGGAAAGACTCTTCTTGCTAAAGCTATTGCAGGTGAGGCTGGAGTCCCATTT 23246 Query 175375 ATCCAGTGCTCTGCCGCAAACTTTGTGGAGATGTTTGTTGGTGTGGGTGCCAAAAGGGTT 175434 || || | || | ||||| ||||||||||||||||| ||||| | | || Sbjct 23245 TTCTCTATTTCGGGATCAGAATTTGTTGAGATGTTTGTTGGTGTCGGTGCTTCACGAGTC 23186 Query 175435 CGCGATCTCTTTGAAATCGCCCGCGAAAATCAACCATGTATTGTCTTCATTGATGAGATT 175494 || ||||| || ||| || || ||| ||| |||||||| || |||| || ||| Sbjct 23185 CGTGATCTTTTCAAAAAGGCAAAAGAGAATGCACCTTGTATTGTTTTTGTTGACGAAATT 23126 Query 175495 GATGCGGTGGGCAAGCAACGCAGCGCTGGTGGTATGCCAGCAAATGACGAGAGAGAACAA 175554 ||||| || || | ||| | | | || | | || |||||| || |||||||| Sbjct 23125 GATGCTGTTGGGAGACAAAGAGGAACAGGCATTGGGGGAGGAAATGATGAAAGAGAACAG 23066 Query 175555 ACAATTAATCAACTACTCACCGAGATGGATGGCTTTGACAATGAGACTGGCATTGTGGTT 175614 || | |||||||| | |||||||||||||| ||||| | | ||||| || | || Sbjct 23065 ACTCTAAATCAACTTTTGACCGAGATGGATGGTTTTGAGGGTAATACTGGTATAATTGTA 23006 Query 175615 ATTGCGGCCACTAATCGCGTGGATATCCTTGATGACGCCCTCCTTCGCCCGGGTCGTTTT 175674 ||||| ||||| ||||| | ||||| | ||| || || ||| | || || |||||| Sbjct 23005 ATTGCAGCCACCAATCGTGCAGATATATTGGATTCTGCTCTTCTTAGGCCTGGACGTTTT 22946 Query 175675 GA 175676 || Sbjct 22945 GA 22944 >seq4514 Length=32024 Score = 138 bits (152), Expect = 1e-27 Identities = 223/318 (70%), Gaps = 2/318 (1%) Strand=Plus/Minus Query 175315 CCAGGTACGGGAAAGACCCTCCTCGCCCGAGCCATCGCGGGTGAATCAAATGTCCCATTC 175374 ||||| || || ||||| || || || || || || |||||| | ||| ||||| Sbjct 22124 CCAGGCACTGGGAAGACACTGCTGGCTAAGGCAATTGCTGGTGAAGCTGGTGTTCCATTT 22065 Query 175375 ATC-CAGTGCTCTGCCGCAAACTTTGTGGAGATGTTTGTTGGTGTGGGTGCCAAAAGGGT 175433 || || | |||| | | ||||| ||||||||||||||||| ||||| ||| || Sbjct 22064 TTCTCAATT-TCTGGTTCCGAGTTTGTAGAGATGTTTGTTGGTGTTGGTGCTTCAAGAGT 22006 Query 175434 TCGCGATCTCTTTGAAATCGCCCGCGAAAATCAACCATGTATTGTCTTCATTGATGAGAT 175493 ||| ||||| || | | ||| |||||| |||||| ||||| ||| |||||||||| Sbjct 22005 TCGTGATCTTTTCAAGAAGGCCAAAGAAAATGCACCATGCATTGTTTTCGTTGATGAGAT 21946 Query 175494 TGATGCGGTGGGCAAGCAACGCAGCGCTGGTGGTATGCCAGCAAATGACGAGAGAGAACA 175553 |||||| || || | |||| | | | ||| | | |||||| || || ||||| Sbjct 21945 TGATGCTGTTGGAAGGCAAAGAGGAACAGGTATTGGAGGTGGAAATGATGAAAGGGAACA 21886 Query 175554 AACAATTAATCAACTACTCACCGAGATGGATGGCTTTGACAATGAGACTGGCATTGTGGT 175613 |||| |||| || || | || ||||||||||||||||| | ||||| || | || Sbjct 21885 AACACTTAACCAGCTCTTAACTGAGATGGATGGCTTTGAAGGAAATACTGGTATCATTGT 21826 Query 175614 TATTGCGGCCACTAATCG 175631 ||||| || || || || Sbjct 21825 CATTGCTGCTACAAACCG 21808 >seq70 Length=129315 Score = 138 bits (152), Expect = 1e-27 Identities = 329/490 (67%), Gaps = 8/490 (2%) Strand=Plus/Minus Query 175191 TGATGTTGAGGGGATTGACGCCGCCAAAGATGAACTTGAAGAGA-TTGTGGATTTTCTCA 175249 |||||||| || |||| | || |||| | |||| | | | |||| || ||||| | Sbjct 36920 TGATGTTGCTGGTGTTGATGAAGC-AAAGCAGGACTTCATGGAAGTTGTAGAATTTCTGA 36862 Query 175250 AGCAACCCGAGAGATATTTTGGAAGTGGTGCCAAGATCCCCCGAGGCGCCCTTCTCGCGG 175309 || |||| ||||| | || | ||||| || || ||| | ||||| | | Sbjct 36861 AGAAACCAGAGAGGTTCACTGCAGTCGGTGCACGAATTCCTAAAGGTGTTCTTCTTGTTG 36802 Query 175310 GTAAGCCAGGTACGGGAAAGACCCTCCTCGCCCGAGCCATCGCGGGTGAATCAAATGTCC 175369 || || ||||| || ||||| || || || || ||||| |||||| | ||| | Sbjct 36801 GTCCTCCGGGTACTGGGAAGACACTGCTGGCTAAGGCAATCGCCGGTGAAGCTGGTGTTC 36742 Query 175370 CATTCATC-CAGTGCTCTGCCGCAAACTTTGTGGAGATGTTTGTTGGTGTGGGTGCCAAA 175428 |||| || || | || | | | ||||| ||||||||||| || || ||||| | Sbjct 36741 CATTTTTCTCAATT-TCAGGTTCTGAGTTTGTAGAGATGTTTGTCGGCGTTGGTGCTTCA 36683 Query 175429 AGGGTTCGCGATCTCTTTGAAATCGCCCGCGAAAATCAACCATGTATTGTCTTCATTGAT 175488 || ||||| || || || | | ||| |||||| |||||| ||||| ||| ||||| Sbjct 36682 AGAGTTCGTGAACTTTTCAAGAAGGCCAAAGAAAATGCACCATGCATTGTTTTCGTTGAT 36623 Query 175489 GAGATTGATGCGGTGGGCAAGCAACGCAGCGCTGG--TGGTATGCCAGCAAATGACGAGA 175546 || |||||||| || || | |||| | | || || | | | | | |||||| |||| Sbjct 36622 GAAATTGATGCAGTTGGAAGGCAAAGAGGAGCAGGAATTGGAGG--TGGAAATGATGAGA 36565 Query 175547 GAGAACAAACAATTAATCAACTACTCACCGAGATGGATGGCTTTGACAATGAGACTGGCA 175606 |||||||||| |||| || || | || ||||||||||||||||| | ||||| Sbjct 36564 GAGAACAAACGCTTAACCAGCTCTTAACTGAGATGGATGGCTTTGAAGGAAACACTGGTG 36505 Query 175607 TTGTGGTTATTGCGGCCACTAATCGCGTGGATATCCTTGATGACGCCCTCCTTCGCCCGG 175666 | | |||||||| || || || || | || || | ||| |||| | || | || | Sbjct 36504 TCATTGTTATTGCAGCTACAAACCGTGCAGACATTTTAGATTCCGCCTTACTGAGGCCTG 36445 Query 175667 GTCGTTTTGA 175676 | || ||||| Sbjct 36444 GACGATTTGA 36435 >seq32078 Length=1569 Score = 132 bits (146), Expect = 6e-26 Identities = 163/222 (73%), Gaps = 3/222 (1%) Strand=Plus/Plus Query 64996 GCCATCCAAACTGTACCATGTATTGAGAAGAAGGCGAAATGGGCAATGAAATGGTTTGAC 65055 || ||| |||| || || || | | |||||||| | ||||| || ||| | || Sbjct 916 GCGATCGAAACCGTCCCCTGCGTCGGAAAGAAGGCCGACTGGGCTCTGCGTTGGATCCAC 975 Query 65056 ACAAAGTCTCGCTCCTTCGCCGAGCGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTC 65115 | ||| ||||||| ||||||||| | | || ||||| || || |||||||||||| Sbjct 976 TC---GTCGAGCTCCTTTGCCGAGCGCATCGTCGCCTTTGCCTGCGTCGAGGGTATCTTC 1032 Query 65116 TTCTCCGGGTCATTCTGCGCTATTTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTA 65175 |||||||| || || ||| | || | ||| | ||||||||||| |||||||| || || Sbjct 1033 TTCTCCGGCTCCTTTTGCTCCATCTTCTGGCTCAAGAAGCGGGGCCTCATGCCTGGGCTC 1092 Query 65176 TGCTTCTCAAATGAACTTATTTCCCGAGATGAGGGTCTCCAC 65217 |||||| || || || || ||||| || |||||||||||| Sbjct 1093 ACCTTCTCCAACGAGCTCATCTCCCGTGACGAGGGTCTCCAC 1134 >seq7765 Length=42474 Score = 129 bits (142), Expect = 7e-25 Identities = 162/222 (73%), Gaps = 3/222 (1%) Strand=Plus/Minus Query 64996 GCCATCCAAACTGTACCATGTATTGAGAAGAAGGCGAAATGGGCAATGAAATGGTTTGAC 65055 || ||| |||| || || || | | |||||||| | ||||| || ||| | || Sbjct 40267 GCGATCGAAACCGTCCCCTGCGTCGGAAAGAAGGCCGACTGGGCTCTGCGTTGGATCCAC 40208 Query 65056 ACAAAGTCTCGCTCCTTCGCCGAGCGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTC 65115 | ||| ||||||| ||||||||| | | || ||||| || || |||||||||||| Sbjct 40207 TC---GTCGAGCTCCTTTGCCGAGCGCATCGTCGCCTTTGCCTGCGTCGAGGGTATCTTC 40151 Query 65116 TTCTCCGGGTCATTCTGCGCTATTTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTA 65175 |||||||| || || ||| | || | ||| | ||||||||||| |||||||| || || Sbjct 40150 TTCTCCGGCTCCTTTTGCTCCATCTTCTGGCTCAAGAAGCGGGGCCTCATGCCTGGGCTC 40091 Query 65176 TGCTTCTCAAATGAACTTATTTCCCGAGATGAGGGTCTCCAC 65217 |||||| || || || || ||||| || ||||| |||||| Sbjct 40090 ACCTTCTCCAACGAGCTCATCTCCCGTGACGAGGGACTCCAC 40049 >seq2510 Length=43382 Score = 127 bits (140), Expect = 2e-24 Identities = 118/150 (79%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 65068 TCCTTCGCCGAGCGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGTCA 65127 ||||| ||||||||| | | || ||||| || || |||||||||||||||||||| || Sbjct 21079 TCCTTTGCCGAGCGCATCGTCGCCTTTGCCTGCGTCGAGGGTATCTTCTTCTCCGGCTCC 21138 Query 65128 TTCTGCGCTATTTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAAAT 65187 |||||| | || | ||| | |||||||| || |||||||| || ||| |||||| || Sbjct 21139 TTCTGCTCCATCTTCTGGCTCAAGAAGCGAGGCCTCATGCCTGGGCTAACCTTCTCCAAC 21198 Query 65188 GAACTTATTTCCCGAGATGAGGGTCTCCAC 65217 || || || ||||| || ||||| |||||| Sbjct 21199 GAGCTCATCTCCCGTGACGAGGGACTCCAC 21228 >seq2656 Length=42395 Score = 118 bits (130), Expect = 1e-21 Identities = 116/150 (77%), Gaps = 0/150 (0%) Strand=Plus/Minus Query 65068 TCCTTCGCCGAGCGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGTCA 65127 |||| |||||||||||| |||| || || || || || || |||||||||||||| || Sbjct 41829 TCCTACGCCGAGCGCCTCGTTGCCTTCGCCTGCGTCGAAGGCATCTTCTTCTCCGGCTCC 41770 Query 65128 TTCTGCGCTATTTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAAAT 65187 |||||||| || | ||| | |||||||| || |||||||| ||||| ||||| || Sbjct 41769 TTCTGCGCAATCTTCTGGCTCAAGAAGCGCGGACTCATGCCTGGCCTCACGTTCTCCAAC 41710 Query 65188 GAACTTATTTCCCGAGATGAGGGTCTCCAC 65217 || || || || || || ||||| |||||| Sbjct 41709 GAGCTCATCTCTCGCGACGAGGGCCTCCAC 41680 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596269182463680