Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eichhornia_20paniculata_20[genbank_20GCA_5F001647135.1_202016-05-02] 40,286 sequences; 571,388,321 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq490 87.8 3e-12 seq2385 86.0 1e-11 >seq490 Length=81643 Score = 87.8 bits (96), Expect = 3e-12 Identities = 129/183 (70%), Gaps = 0/183 (0%) Strand=Plus/Minus Query 171887 AATATTATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCT 171946 |||||| || |||| || | || | || || | || || || ||||| || | || Sbjct 59696 AATATTGTAGTCTGCTAGGGTGCGCCCATCCTCAAGCTGCTTCCCCGCAAAGATGAGCCT 59637 Query 171947 CTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGT 172006 ||||||||| || || || || ||||| || || ||||| || ||||| || || Sbjct 59636 CTGTTGGTCTGGAGGAATGCCCTCTTTGTCCTGAATTTTTGCCTTGACATTGTCAATGGT 59577 Query 172007 ATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTG 172066 ||||| ||||| || || || || ||||| || ||||| | || || | ||||||||| Sbjct 59576 GTCTGAAGATTCAACCTCAAGGGTTATGGTCTTGCCAGTCAGAGTCTTGACGAATATCTG 59517 Query 172067 CAT 172069 ||| Sbjct 59516 CAT 59514 >seq2385 Length=44452 Score = 86.0 bits (94), Expect = 1e-11 Identities = 112/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 171915 TCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTA 171974 || ||||| || || || || || || || | ||| ||||| || || || || || || Sbjct 34197 TCCTCCAACTGCTTGCCTGCGAAGATCAAACGCTGCTGGTCTGGGGGGATGCCCTCCTTG 34138 Query 171975 TCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATG 172034 || ||||| || || ||||| |||||||||||| || || || || ||||| || Sbjct 34137 TCCTGTATCTTGGCCTTGACATTGTCTATAGTATCTGAAGACTCAACCTCAAGAGTGATT 34078 Query 172035 GTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || || ||||| || || || | ||| |||||||| Sbjct 34077 GTCTTGCCAGTCAAGGTCTTCACGAAGATCTGCAT 34043 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 904680196138800