Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eichhornia_20paniculata_20[genbank_20GCA_5F001647135.1_202016-05-02] 40,286 sequences; 571,388,321 total letters Query= NC_021924.1 Length=129052 Score E Sequences producing significant alignments: (Bits) Value seq220 102 7e-17 seq5203 89.7 4e-13 seq2385 89.7 4e-13 >seq220 Length=196394 Score = 102 bits (112), Expect = 7e-17 Identities = 162/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGC-CTGA 110331 ||||| || |||||||| || | || ||||| || || ||| |||| ||| || | Sbjct 149226 ATGCAGATCTTTGTCAAGACCCTCACTGGCAAGACGATCACCCTCGAGGTTGAGAGCTCA 149167 Query 110332 CGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCA 110391 || || ||| | | ||||| ||||||| ||||| |||||| | ||| |||||| Sbjct 149166 -GACACCATCGACAATGTAAAGGCGAAGATTCAGGACAAGGAAGGCATTCCCCCGGATCA 149108 Query 110392 ACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAA 110451 || || || || | || ||||| ||||| ||||||| | || | || || ||||| Sbjct 149107 GCAGAGGCTCATCTTCGCTGGTAAGCAGCTCGAGGATGGGCGCACTCTTGCTGACTACAA 149048 Query 110452 CATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGGAA 110501 |||||| || |||||||| | ||| ||||| | || || | || |||| Sbjct 149047 CATTCAGAAGGAATCTACCCTCCACTTGGTGCTGAGGCTTAGGGGTGGAA 148998 >seq5203 Length=29324 Score = 89.7 bits (98), Expect = 4e-13 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 110366 GACAAAGAAGGCGTGCCCGTGGATCAACAAAGACTTATTTATGCGGGTAAACAGCTGGAG 110425 ||||| |||||| | ||| ||| || || || | |||| ||| |||||||||||||| Sbjct 19253 GACAAGGAAGGCATACCCCCGGACCAGCAGAGGTTGATTTTTGCAGGTAAACAGCTGGAA 19194 Query 110426 GATGCCAGAACAATGGCGGATTACAACATTCAAAAAGAATCTACGTTGCACATGGTGTTA 110485 |||| | | ||| |||| || |||||||| || || ||||| ||| | ||| |||| | Sbjct 19193 GATGGCCGGACACTGGCAGACTACAACATCCAGAAGGAATCGACGCTCCACCTGGTCCTC 19134 Query 110486 AGACTGCGAGGGGG 110499 || || || || || Sbjct 19133 AGGCTCCGCGGCGG 19120 >seq2385 Length=44452 Score = 89.7 bits (98), Expect = 4e-13 Identities = 142/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 ||||| || ||||| || || | || |||||||| || ||| | || ||| | Sbjct 34650 ATGCAGATCTTTGTGAAGACGCTGACTGGCAAAACGATCACCCTTGAGGTTGAGTCATCG 34709 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 || || ||| | | || || ||||| ||||| || ||| | ||| ||| || Sbjct 34710 GACACCATCGACAATGTTAAGGCCAAGATCCAAGACAAGGAGGGCATCCCCCCGGACCAG 34769 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 ||||| || |||| ||| || || ||||| ||||||| | || |||| ||||||||| Sbjct 34770 CAAAGGCTCATTTTTGCAGGGAAGCAGCTTGAGGATGGACGCACTTTGGCTGATTACAAC 34829 Query 110453 ATTCAAAAAGAATCTACGTTGCAC 110476 || ||||| ||||||||| | ||| Sbjct 34830 ATCCAAAAGGAATCTACGCTCCAC 34853 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 412638900708998