Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eichhornia_20paniculata_20[genbank_20GCA_5F001647135.1_202016-05-02] 40,286 sequences; 571,388,321 total letters Query= NC_023177.1 Length=124688 Score E Sequences producing significant alignments: (Bits) Value seq5010 98.7 8e-16 seq220 98.7 8e-16 seq2385 91.5 1e-13 seq263 89.7 4e-13 seq5203 87.8 1e-12 >seq5010 Length=51657 Score = 98.7 bits (108), Expect = 8e-16 Identities = 150/211 (71%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTGG 107614 ||||| || || || || ||| | |||||||| || |||||| | || ||| ||| Sbjct 38292 ATGCAGATCTTCGTGAAGACTCTGACAGGCAAGACGATTACCTTGGAGGTCGAGAGCTC- 38350 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 ||| || | | | || || |||||| ||||| ||||| | ||| ||| || Sbjct 38351 CGACACCATTGATAACGTGAAGGCCAAGATTCAGGATAAGGAAGGTATCCCCCCGGACCA 38410 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 |||||| ||||||| ||| || || ||||| ||||||| | || | ||||||||||| Sbjct 38411 GCAGAGGCTTATTTTTGCCGGCAAGCAGCTCGAGGACGGCCGCACCCTTGCGGACTACAA 38470 Query 107735 CATTCAAAAGGAGTCTACGTTGCACATGGTG 107765 |||||| || ||||| || | ||| ||||| Sbjct 38471 CATTCAGAAAGAGTCCACCCTCCACCTGGTG 38501 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||| || || ||||| || | || || || ||||| ||| |||| ||| || | Sbjct 37836 ATGCAGATCTTCGTCAAGACCCTCACCGGAAAGACCATCACCCTCGAGGTGGAATCTTCC 37895 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 || || ||| | | || ||| ||||| || || || ||| | ||| ||||||| Sbjct 37896 GACACCATCGACAACGTTAAAGCCAAGATCCAGGACAAGGAGGGCATCCCCCCGGATCAG 37955 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||||| | || | ||| |||||||| || ||||| | | || | || ||||| ||| Sbjct 37956 CAGAGGTTGATCTTTGCCGGTAAACAACTCGAGGATGGCCGCACCCTCGCCGACTATAAC 38015 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGT 107764 || || |||||||| || | ||| |||| Sbjct 38016 ATCCAGAAGGAGTCCACCCTCCACCTGGT 38044 >seq220 Length=196394 Score = 98.7 bits (108), Expect = 8e-16 Identities = 153/216 (71%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTGG 107614 ||||| || |||||||| || | || ||||| || || ||| |||| ||| ||| Sbjct 149226 ATGCAGATCTTTGTCAAGACCCTCACTGGCAAGACGATCACCCTCGAGGTTGAGAGCTCA 149167 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 || || ||| | | ||||| |||||| || || |||||| | ||| |||||| Sbjct 149166 -GACACCATCGACAATGTAAAGGCGAAGATTCAGGACAAGGAAGGCATTCCCCCGGATCA 149108 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 |||||| || || | || ||||| ||||| ||||| | || | || |||||||| Sbjct 149107 GCAGAGGCTCATCTTCGCTGGTAAGCAGCTCGAGGATGGGCGCACTCTTGCTGACTACAA 149048 Query 107735 CATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAG 107770 |||||| ||||| ||||| | ||| ||||| |||| Sbjct 149047 CATTCAGAAGGAATCTACCCTCCACTTGGTGCTGAG 149012 >seq2385 Length=44452 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 107555 AATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGG 107614 |||||| || |||||||| || | || ||||| ||||||||| | || || || Sbjct 34877 AATGCAGATCTTTGTCAAGACCCTGACTGGCAAGACCATTACCCTTGAGGTTGAATCTTC 34936 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 || || | | | | || || ||||||| || ||||| ||| | || ||| || Sbjct 34937 AGACACCATTGACAACGTCAAGGCAAAGATTCAGGACAAAGAGGGCATTCCTCCGGACCA 34996 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 |||||| || || | ||| || || ||||| ||||||| || | || |||||||| Sbjct 34997 GCAGAGGCTCATCTTTGCTGGGAAGCAGCTTGAGGACGGGCGCACCCTAGCAGACTACAA 35056 Query 107735 CATTCAAAAGGAGTCTACGTTGCACATGGT 107764 |||||||||||||| || |||| |||| Sbjct 35057 TATTCAAAAGGAGTCGACCCTGCATCTGGT 35086 >seq263 Length=97214 Score = 89.7 bits (98), Expect = 4e-13 Identities = 148/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTGG 107614 ||||| || || || || ||| | || ||||| ||||| || | ||| ||| ||| | Sbjct 78305 ATGCAGATCTTCGTTAAGACTCTGACCGGCAAGACCATCACTTTGGAAGTCGAGAGCTCG 78246 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 || || | | | | || || ||||| ||||| || ||| | ||| ||| || Sbjct 78245 -GACACCATTGACAACGTGAAGGCCAAGATCCAGGATAAGGAGGGCATCCCCCCGGACCA 78187 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 |||||| ||||| | || || || ||||| ||||||| | ||| | || |||||||| Sbjct 78186 GCAGAGGCTTATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGAACCCTCGCAGACTACAA 78127 Query 107735 CATTCAAAAGGAGTCTACGTTGCACATGGTG 107765 ||| ||||||||||| || | ||| ||||| Sbjct 78126 CATCCAAAAGGAGTCCACCCTTCACCTGGTG 78096 >seq5203 Length=29324 Score = 87.8 bits (96), Expect = 1e-12 Identities = 89/116 (77%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 107649 GATAAAGAAGGCGTGCCCGTGGATCAGCAGAGACTTATTTATGCGGGTAAACAGCTGGAG 107708 || || |||||| | ||| ||| |||||||| | |||| ||| |||||||||||||| Sbjct 19253 GACAAGGAAGGCATACCCCCGGACCAGCAGAGGTTGATTTTTGCAGGTAAACAGCTGGAA 19194 Query 107709 GACGCCAAAACAATGGCGGACTACAACATTCAAAAGGAGTCTACGTTGCACATGGT 107764 || | | ||| |||| ||||||||||| || ||||| || ||| | ||| |||| Sbjct 19193 GATGGCCGGACACTGGCAGACTACAACATCCAGAAGGAATCGACGCTCCACCTGGT 19138 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 398680957225054