Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eichhornia_20paniculata_20[genbank_20GCA_5F001647135.1_202016-05-02] 40,286 sequences; 571,388,321 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq2385 145 1e-29 seq490 136 8e-27 seq220 136 8e-27 seq5010 122 2e-22 seq263 107 4e-18 >seq2385 Length=44452 Score = 145 bits (160), Expect = 1e-29 Identities = 154/203 (76%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 82608 TGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGT 82667 || || |||||||| ||||| || || ||||||| || ||| || ||||| | ||| Sbjct 34624 TGAAGCGTAGATTCCTTCTGGATGTTGTAATCAGCGAGGGTTCGCCCATCTTCCAACTGT 34565 Query 82668 TTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTT 82727 || || |||||||| || || || ||||||||||| || || |||||||| ||||||||| Sbjct 34564 TTCCCTGCAAAGATAAGCCTCTGCTGATCTGGAGGAATGCCCTCCTTATCCTGAATCTTT 34505 Query 82728 GCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTC 82787 || || ||||| || || || || | || || || | || ||||| ||||| ||| Sbjct 34504 GCCTTGACATTGTCGATGGTGTCCGATGACTCAACCTCAAGGGTGATCGTTTTGCCAGTC 34445 Query 82788 AACGTCTTTACAAATATCTGCAT 82810 | |||||| ||||| |||||||| Sbjct 34444 AGCGTCTTCACAAAGATCTGCAT 34422 Score = 131 bits (144), Expect = 3e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 ||||| | | ||| ||||| | ||| || || || || ||||| || || || |||| Sbjct 34041 CCTCCACGAAGACGGAGAACAAGGTGGAGTGTTGACTCCTTCTGGATGTTGTAGTCAGCC 33982 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 || | | || || || |||||||| ||||||||||| || | || || || ||||| Sbjct 33981 AGGGTGCGGCCATCCTCGAGTTGTTTGCCAGCAAAGATCAGACGCTGCTGGTCCGGAGGA 33922 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 ||||| ||||| || ||||| || || || ||||| || || ||||| | || || Sbjct 33921 ATTCCCTCCTTGTCCTGAATTTTGGCCTTAACATTGTCGATTGTATCGGATGACTCGACC 33862 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || | ||| || ||||| || ||||| ||||||||||| || ||||| Sbjct 33861 TCAAGAGTGATGGTCTTCCCGGTCAATGTCTTTACAAAGATTTGCAT 33815 Score = 129 bits (142), Expect = 1e-24 Identities = 158/216 (73%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 82596 CGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCG 82655 || ||||| | ||||| || || || || || ||||| || || | ||| | | ||| Sbjct 35092 CGAAGAACCAGATGCAGGGTCGACTCCTTTTGAATATTGTAGTCTGCTAGGGTGCGCCCG 35033 Query 82656 TCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTA 82715 || || || || || ||||||||||| || || || || || ||||| || || || || Sbjct 35032 TCCTCAAGCTGCTTCCCAGCAAAGATGAGCCTCTGCTGGTCCGGAGGAATGCCCTCTTTG 34973 Query 82716 TCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATC 82775 || ||||||||||| || || || ||||| || || || ||| || || | || || Sbjct 34972 TCCTGAATCTTTGCCTTGACGTTGTCAATGGTGTCTGAAGATTCAACCTCAAGGGTAATG 34913 Query 82776 GTCTTGCCTGTCAACGTCTTTACAAATATCTGCATT 82811 |||||||| |||| ||||| ||||| ||||||||| Sbjct 34912 GTCTTGCCAGTCAGGGTCTTGACAAAGATCTGCATT 34877 >seq490 Length=81643 Score = 136 bits (150), Expect = 8e-27 Identities = 159/215 (74%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 82596 CGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCG 82655 || || || | ||| || |||||||| ||||| || || ||||||| || | | || Sbjct 59272 CGGAGGACAAGGTGGAGTGTAGATTCCTTCTGGATGTTGTAATCAGCAAGGGTGCGTCCA 59213 Query 82656 TCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTA 82715 ||||| || || || || ||||| || |||||||| || || || || || || ||||| Sbjct 59212 TCTTCGAGCTGCTTCCCTGCAAATATGAGTCTTTGCTGGTCCGGGGGAATGCCCTCCTTG 59153 Query 82716 TCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATC 82775 || ||||||||||| || || || ||||| || || | ||| || || | || || Sbjct 59152 TCCTGAATCTTTGCCTTGACGTTGTCAATGGTGTCTGACGATTCAACCTCAAGGGTAATA 59093 Query 82776 GTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 ||||| || ||||| ||||| |||||||||||||| Sbjct 59092 GTCTTACCAGTCAAGGTCTTAACAAATATCTGCAT 59058 Score = 131 bits (144), Expect = 3e-25 Identities = 158/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 82596 CGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCG 82655 || ||||| | ||| || || || || ||||| || || || |||| || | | || Sbjct 58588 CGGAGAACAAGGTGGAGTGTTGACTCCTTCTGGATGTTGTAGTCAGCCAGGGTACGGCCA 58529 Query 82656 TCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTA 82715 || || || ||||| ||||||||||| || | ||| || || ||||| || || ||||| Sbjct 58528 TCCTCGAGCTGTTTGCCAGCAAAGATCAGACGTTGCTGGTCCGGAGGGATACCCTCCTTG 58469 Query 82716 TCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATC 82775 || ||||| || || || ||||| ||||| |||||| | || || || | ||| || Sbjct 58468 TCCTGAATTTTGGCCTTGACATTATCAATTGTATCAGATGACTCGACCTCAAGAGTGATG 58409 Query 82776 GTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 |||||||||||||| ||||| || || || ||||| Sbjct 58408 GTCTTGCCTGTCAATGTCTTGACGAAGATTTGCAT 58374 Score = 131 bits (144), Expect = 3e-25 Identities = 158/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 82596 CGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCG 82655 || ||||| | ||||| || || || || || ||||| || || | ||| | | || Sbjct 59728 CGAAGAACCAGATGCAGGGTTGACTCCTTTTGAATATTGTAGTCTGCTAGGGTGCGCCCA 59669 Query 82656 TCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTA 82715 || || || || || || |||||||| || || ||||| |||||||| || || || || Sbjct 59668 TCCTCAAGCTGCTTCCCCGCAAAGATGAGCCTCTGTTGGTCTGGAGGAATGCCCTCTTTG 59609 Query 82716 TCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATC 82775 || ||||| ||||| || ||||| ||||| || || || ||| || || | ||||| Sbjct 59608 TCCTGAATTTTTGCCTTGACATTGTCAATGGTGTCTGAAGATTCAACCTCAAGGGTTATG 59549 Query 82776 GTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 |||||||| |||| ||||| || ||||||||||| Sbjct 59548 GTCTTGCCAGTCAGAGTCTTGACGAATATCTGCAT 59514 Score = 122 bits (134), Expect = 2e-22 Identities = 156/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 82596 CGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCG 82655 || || || | ||| || || || || || || || || || |||| || | | ||| Sbjct 58816 CGAAGCACAAGGTGGAGCGTGGACTCCTTTTGAATGTTGTAGTCAGCCAGGGTGCGACCA 58757 Query 82656 TCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTA 82715 || || | ||| || || |||||||| || | || || || || || ||||| ||||| Sbjct 58756 TCCTCCAATTGCTTGCCTGCAAAGATCAGACGCTGCTGGTCCGGGGGGATTCCCTCCTTG 58697 Query 82716 TCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATC 82775 || || ||||| || || ||||| ||||| ||||| || || || || | ||| || Sbjct 58696 TCCTGGATCTTGGCCTTGACATTGTCAATAGTATCTGAAGACTCAACCTCAAGAGTGATT 58637 Query 82776 GTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 |||||||||||||| ||||| ||||| |||||||| Sbjct 58636 GTCTTGCCTGTCAAGGTCTTCACAAAGATCTGCAT 58602 >seq220 Length=196394 Score = 136 bits (150), Expect = 8e-27 Identities = 160/214 (75%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 82598 CAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTC 82657 ||| || ||||| || |||||||| ||||| || || || |||| ||| | | || || Sbjct 149014 CAGCACCAAGTGGAGGGTAGATTCCTTCTGAATGTTGTAGTCAGCAAGAGTGCGCCCATC 149073 Query 82658 TTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATC 82717 || || || || ||||| ||||| || || || ||||| || || || |||||||| || Sbjct 149074 CTCGAGCTGCTTACCAGCGAAGATGAGCCTCTGCTGATCCGGGGGAATGCCTTCCTTGTC 149133 Query 82718 TTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGT-TCTACTTCCAAAGTTATCG 82776 |||||||| || |||||||| || || || || | || | || || || | || |||| Sbjct 149134 CTGAATCTTCGCCTTTACATTGTCGATGGTGTC-TGAGCTCTCAACCTCGAGGGTGATCG 149192 Query 82777 TCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 ||||||| || | ||||| ||||| |||||||| Sbjct 149193 TCTTGCCAGTGAGGGTCTTGACAAAGATCTGCAT 149226 Score = 118 bits (130), Expect = 2e-21 Identities = 154/213 (72%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 82598 CAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTC 82657 |||||| | |||||| || || || ||||| || || || || | || | | ||||| Sbjct 149470 CAGAACAAGGTGCAGTGTGGACTCCTTCTGGATGTTGTAGTCTGCGAGGGTGCGGCCGTC 149529 Query 82658 TTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATC 82717 ||| | || || ||||||||||| || ||||| || || || || || |||||||| || Sbjct 149530 TTCCAACTGCTTGCCAGCAAAGATGAGCCTTTGCTGGTCCGGGGGGATGCCTTCCTTGTC 149589 Query 82718 TTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGT 82777 || ||||| || || || || || || |||||| | || || || | || || || Sbjct 149590 CTGGATCTTCGCCTTGACGTTGTCGATGGTATCAGAACTCTCGACCTCGAGGGTAATGGT 149649 Query 82778 CTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 ||| || |||| |||||| || || |||||||| Sbjct 149650 CTTTCCGGTCAGCGTCTTCACGAAGATCTGCAT 149682 Score = 105 bits (116), Expect = 1e-17 Identities = 145/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 82608 TGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGT 82667 |||||||| || || ||||| || || || || | ||| | | ||||| || | ||| Sbjct 149708 TGCAGAGTGGACTCCTTCTGGATGTTGTAGTCGGCGAGAGTGCGGCCGTCCTCCAACTGT 149767 Query 82668 TTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTT 82727 || || || ||||| || ||||| || || || || || || ||||| || || ||||| Sbjct 149768 TTGCCCGCGAAGATGAGCCTTTGCTGGTCCGGCGGGATGCCCTCCTTGTCCTGGATCTTG 149827 Query 82728 GCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTC 82787 || || || || || || || || | || || || | || |||||||||||||| Sbjct 149828 GCCTTGACGTTGTCGATGGTGTCCGAGGACTCCACCTCGAGGGTGATCGTCTTGCCTGTG 149887 Query 82788 AACGTCTTTACAAATATCTGCAT 82810 | ||||| ||||| |||||||| Sbjct 149888 AGGGTCTTAACAAAGATCTGCAT 149910 >seq5010 Length=51657 Score = 122 bits (134), Expect = 2e-22 Identities = 158/216 (73%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 82596 CGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCG 82655 || || || | ||| || || || |||||||| || || || || | || | | ||| Sbjct 38506 CGGAGCACCAGGTGGAGGGTGGACTCTTTCTGAATGTTGTAGTCCGCAAGGGTGCGGCCG 38447 Query 82656 TCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTA 82715 || || || || || || ||||| || || || || || || || || || ||||||||| Sbjct 38446 TCCTCGAGCTGCTTGCCGGCAAAAATAAGCCTCTGCTGGTCCGGGGGGATACCTTCCTTA 38387 Query 82716 TCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGT-TCTACTTCCAAAGTTAT 82774 || |||||||| || || || || ||||| || || || | || || ||||| || || Sbjct 38386 TCCTGAATCTTGGCCTTCACGTTATCAATGGTGTCGG-AGCTCTCGACCTCCAAGGTAAT 38328 Query 82775 CGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 |||||||||||||| ||||| || || |||||||| Sbjct 38327 CGTCTTGCCTGTCAGAGTCTTCACGAAGATCTGCAT 38292 Score = 104 bits (114), Expect = 5e-17 Identities = 154/216 (71%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 82596 CGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCG 82655 || || || | ||| || || ||||||||||| || |||||||| | || | | || Sbjct 38734 CGGAGCACCAGGTGGAGGGTGGATTCTTTCTGAATGTTATAATCGGCAAGGGTACGGCCA 38675 Query 82656 TCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTA 82715 || || || || || ||||| ||||| || || || ||||| || || || || ||||| Sbjct 38674 TCCTCAAGCTGCTTGCCAGCGAAGATGAGCCTCTGCTGATCCGGGGGAATCCCCTCCTTG 38615 Query 82716 TCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGT-TCTACTTCCAAAGTTAT 82774 || || || || || || || || ||||| ||||| || | || ||||| | || || Sbjct 38614 TCCTGGATTTTAGCCTTAACGTTGTCAATGGTATC-CGAGCTCTCGACTTCAAGGGTGAT 38556 Query 82775 CGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || ||||| || | ||||| || || |||||||| Sbjct 38555 GGTTTTGCCAGTAAGTGTCTTGACGAAGATCTGCAT 38520 >seq263 Length=97214 Score = 107 bits (118), Expect = 4e-18 Identities = 155/216 (72%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 82596 CGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCG 82655 || || || | ||| || || || || || || || || || || | || ||| ||| Sbjct 78091 CGGAGCACCAGGTGAAGGGTGGACTCCTTTTGGATGTTGTAGTCTGCGAGGGTTCGGCCG 78150 Query 82656 TCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTA 82715 || || || || || || || ||||| || || || || || || || || || |||||| Sbjct 78151 TCCTCGAGCTGCTTGCCGGCGAAGATAAGCCTCTGCTGGTCCGGGGGGATGCCCTCCTTA 78210 Query 82716 TCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGT-TCTACTTCCAAAGTTAT 82774 || || ||||| || || || || ||||| || || || | || ||||||||||| || Sbjct 78211 TCCTGGATCTTGGCCTTCACGTTGTCAATGGTGTCCG-AGCTCTCGACTTCCAAAGTGAT 78269 Query 82775 CGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 |||||||| |||| ||||| || || |||||||| Sbjct 78270 GGTCTTGCCGGTCAGAGTCTTAACGAAGATCTGCAT 78305 Score = 105 bits (116), Expect = 1e-17 Identities = 155/217 (71%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 82595 ACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACC 82654 ||| || || | ||| || || || || ||||| || || || || | || | | ||| Sbjct 78546 ACGGAGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGACC 78605 Query 82655 GTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTT 82714 ||| || || || || || || ||||| || || || || || || || ||||||||||| Sbjct 78606 GTCCTCGAGCTGCTTGCCGGCGAAGATCAGCCTCTGCTGGTCCGGGGGGATTCCTTCCTT 78665 Query 82715 ATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGT-TCTACTTCCAAAGTTA 82773 || || ||||| || || || || || || || || || | || || ||||| || | Sbjct 78666 GTCCTGGATCTTGGCCTTCACGTTGTCGATGGTGTC-GGAGCTCTCGACCTCCAAGGTGA 78724 Query 82774 TCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 | |||||||| |||| ||||| || || |||||||| Sbjct 78725 TGGTCTTGCCCGTCAGGGTCTTGACGAAGATCTGCAT 78761 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981320415776954