Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eichhornia_20paniculata_20[genbank_20GCA_5F001647135.1_202016-05-02] 40,286 sequences; 571,388,321 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq3117 109 8e-19 seq2656 102 1e-16 seq32078 89.7 7e-13 seq7765 89.7 7e-13 >seq3117 Length=39173 Score = 109 bits (120), Expect = 8e-19 Identities = 110/143 (77%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 69517 TCGAATTCATCTCCCCAAACATCATCCAATCCAGGACATTCATTTGGACACATCAATGAC 69576 || ||||| ||||||||| |||| ||||||| ||| |||||| || || | ||||||| Sbjct 13840 TCAAATTCGTCTCCCCAACAATCAGCCAATCCTGGAGCTTCATTAGGGCAAAACAATGAC 13899 Query 69577 CACACATCATCATCCTTAACTCGTTTCATAAATAGATCGGGAATCCAAAGAGCTATAAAG 69636 || | ||| ||||| ||| | || ||| || || |||||||||||||| || | ||| Sbjct 13900 CATTGACCATTATCCTGAACCCTTTGCATGAAGAGGTCGGGAATCCAAAGTGCAAAAAAT 13959 Query 69637 AGATCTCTGGTTCTATTTTCTTC 69659 ||||| || | ||||| ||||| Sbjct 13960 AGATCCCTTGCTCTATGCTCTTC 13982 Score = 105 bits (116), Expect = 9e-18 Identities = 157/223 (70%), Gaps = 0/223 (0%) Strand=Plus/Plus Query 69750 TCCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACC 69809 |||||| ||||| | || | ||||| | ||| | || |||||||| |||| ||| || Sbjct 14554 TCCTCCTTGATCAACATAACGTGCAGTATCATTGAAAACCCTCAGCATAGGAACAATGCC 14613 Query 69810 ATTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAGA 69869 ||||||| | |||||||| ||| || ||||| ||| |||| || || || || || Sbjct 14614 ATTAGATGTTCCATTTGTACCACGGATGTAACTACCTGTTGCTCGGATGTTGTGAACTGA 14673 Query 69870 TAGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATAT 69929 | || |||||||| || || |||| |||||| || | || ||||| || Sbjct 14674 AACTCCAATTCCTCCAGCAGACTTGCTTATTATAGCACACTCCTTAAGAGTATCATAGAT 14733 Query 69930 ACCCTCTATGCTATCATCTATCATGTTAAGAAGAAAACAGCTA 69972 ||||| |||||||||||| ||||| | || ||||| ||| Sbjct 14734 GCCCTCAATGCTATCATCTTTCATGCATATCAGGAAACAACTA 14776 Score = 96.9 bits (106), Expect = 5e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 69990 AGTTCCCGCATTAAATAATGTAGGAGATGCGTGAGTGAACCATTTTTCAGAAAGCAGATT 70049 ||| || ||||| || || || || || || ||||||||||| || ||| | ||||| Sbjct 14891 AGTGCCTGCATTGAACAAGGTCGGCGAAGCATGAGTGAACCAACGTTGAGACATCAGATG 14950 Query 70050 GTATGTTTCAATAGCTGATTCTATATCCCACTGATGAATTCCTATCGCGACACGCATCAA 70109 ||||||| || || || || || || | || ||||| | | || | |||||| Sbjct 14951 GTATGTTCTGATGGCAGACTCAATGTCATCTTTGTGGATTCCAACAGATACTCTCATCAA 15010 Query 70110 CATATGCTGAGGTCGTTCTACCGTTTTATTATTTATTTTCAACAGGTATGATTTTTCCAG 70169 ||| ||||| |||| || || || | | ||||||||| ||||| |||| || Sbjct 15011 CATGTGCTGCGGTCTCTCCACAACCTTTCCAGAAACTTTCAACAGATATGACCTTTCGAG 15070 Query 70170 AGTTTTAAACCCAAAATAGTTGTATGAAAAGTCTCTTTCGTAAATAAT 70217 ||||||||| ||||| |||| || |||||| | || ||||| || Sbjct 15071 AGTTTTAAATCCAAAGTAGTCATAGTCAAAGTCACGGTCATAAATTAT 15118 >seq2656 Length=42395 Score = 102 bits (112), Expect = 1e-16 Identities = 122/163 (75%), Gaps = 2/163 (1%) Strand=Plus/Plus Query 39616 GCAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAG 39675 |||||||||||| || || |||||||| || | | || | ||||| || || ||||| Sbjct 41665 GCAGGCGAAGTCGCAGTGGAGGCCCTCGTCGCGAGAGATGAGCTCGTTGGAGAACGTGAG 41724 Query 39676 TCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCA-AAAGATCCAGAAAAGA 39734 |||||||| || || ||||| |||||||| || || || ||| || || || || |||| Sbjct 41725 GCCAGGCATGAGTCCGCGCTTCTTGAGCCAGAAGATTGC-GCAGAAGGAGCCGGAGAAGA 41783 Query 39735 AGATGCCTTCTACTGCTGCAAATGCAACAAGTCTCTCTCCGTA 39777 |||||||||| || || || ||||| || | ||| |||| Sbjct 41784 AGATGCCTTCGACGCAGGCGAAGGCAACGAGGCGCTCGGCGTA 41826 >seq32078 Length=1569 Score = 89.7 bits (98), Expect = 7e-13 Identities = 101/133 (76%), Gaps = 2/133 (2%) Strand=Plus/Minus Query 39616 GCAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAG 39675 |||||||||||| || || || ||||| || | || | ||||| || || ||||| Sbjct 1149 GCAGGCGAAGTCGCAGTGGAGACCCTCGTCACGGGAGATGAGCTCGTTGGAGAAGGTGAG 1090 Query 39676 TCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAA-GATCCAGAAAAGA 39734 |||||||| || || ||||| |||||||| || |||| ||||||| || || || |||| Sbjct 1089 CCCAGGCATGAGGCCCCGCTTCTTGAGCCAGAAGATGG-AGCAAAAGGAGCCGGAGAAGA 1031 Query 39735 AGATGCCTTCTAC 39747 |||| || || || Sbjct 1030 AGATACCCTCGAC 1018 >seq7765 Length=42474 Score = 89.7 bits (98), Expect = 7e-13 Identities = 101/133 (76%), Gaps = 2/133 (2%) Strand=Plus/Plus Query 39616 GCAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAG 39675 |||||||||||| || || || ||||| || | || | ||||| || || ||||| Sbjct 40034 GCAGGCGAAGTCGCAGTGGAGTCCCTCGTCACGGGAGATGAGCTCGTTGGAGAAGGTGAG 40093 Query 39676 TCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAA-GATCCAGAAAAGA 39734 |||||||| || || ||||| |||||||| || |||| ||||||| || || || |||| Sbjct 40094 CCCAGGCATGAGGCCCCGCTTCTTGAGCCAGAAGATGG-AGCAAAAGGAGCCGGAGAAGA 40152 Query 39735 AGATGCCTTCTAC 39747 |||| || || || Sbjct 40153 AGATACCCTCGAC 40165 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686562889901040