Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Eichhornia_20paniculata_20[genbank_20GCA_5F001647135.1_202016-05-02]
40,286 sequences; 571,388,321 total letters
Query= NC_027213.1
Length=214699
Score E
Sequences producing significant alignments: (Bits) Value
seq3117 109 8e-19
seq2656 102 1e-16
seq32078 89.7 7e-13
seq7765 89.7 7e-13
>seq3117
Length=39173
Score = 109 bits (120), Expect = 8e-19
Identities = 110/143 (77%), Gaps = 0/143 (0%)
Strand=Plus/Plus
Query 69517 TCGAATTCATCTCCCCAAACATCATCCAATCCAGGACATTCATTTGGACACATCAATGAC 69576
|| ||||| ||||||||| |||| ||||||| ||| |||||| || || | |||||||
Sbjct 13840 TCAAATTCGTCTCCCCAACAATCAGCCAATCCTGGAGCTTCATTAGGGCAAAACAATGAC 13899
Query 69577 CACACATCATCATCCTTAACTCGTTTCATAAATAGATCGGGAATCCAAAGAGCTATAAAG 69636
|| | ||| ||||| ||| | || ||| || || |||||||||||||| || | |||
Sbjct 13900 CATTGACCATTATCCTGAACCCTTTGCATGAAGAGGTCGGGAATCCAAAGTGCAAAAAAT 13959
Query 69637 AGATCTCTGGTTCTATTTTCTTC 69659
||||| || | ||||| |||||
Sbjct 13960 AGATCCCTTGCTCTATGCTCTTC 13982
Score = 105 bits (116), Expect = 9e-18
Identities = 157/223 (70%), Gaps = 0/223 (0%)
Strand=Plus/Plus
Query 69750 TCCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACC 69809
|||||| ||||| | || | ||||| | ||| | || |||||||| |||| ||| ||
Sbjct 14554 TCCTCCTTGATCAACATAACGTGCAGTATCATTGAAAACCCTCAGCATAGGAACAATGCC 14613
Query 69810 ATTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAGA 69869
||||||| | |||||||| ||| || ||||| ||| |||| || || || || ||
Sbjct 14614 ATTAGATGTTCCATTTGTACCACGGATGTAACTACCTGTTGCTCGGATGTTGTGAACTGA 14673
Query 69870 TAGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATAT 69929
| || |||||||| || || |||| |||||| || | || ||||| ||
Sbjct 14674 AACTCCAATTCCTCCAGCAGACTTGCTTATTATAGCACACTCCTTAAGAGTATCATAGAT 14733
Query 69930 ACCCTCTATGCTATCATCTATCATGTTAAGAAGAAAACAGCTA 69972
||||| |||||||||||| ||||| | || ||||| |||
Sbjct 14734 GCCCTCAATGCTATCATCTTTCATGCATATCAGGAAACAACTA 14776
Score = 96.9 bits (106), Expect = 5e-15
Identities = 158/228 (69%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 69990 AGTTCCCGCATTAAATAATGTAGGAGATGCGTGAGTGAACCATTTTTCAGAAAGCAGATT 70049
||| || ||||| || || || || || || ||||||||||| || ||| | |||||
Sbjct 14891 AGTGCCTGCATTGAACAAGGTCGGCGAAGCATGAGTGAACCAACGTTGAGACATCAGATG 14950
Query 70050 GTATGTTTCAATAGCTGATTCTATATCCCACTGATGAATTCCTATCGCGACACGCATCAA 70109
||||||| || || || || || || | || ||||| | | || | ||||||
Sbjct 14951 GTATGTTCTGATGGCAGACTCAATGTCATCTTTGTGGATTCCAACAGATACTCTCATCAA 15010
Query 70110 CATATGCTGAGGTCGTTCTACCGTTTTATTATTTATTTTCAACAGGTATGATTTTTCCAG 70169
||| ||||| |||| || || || | | ||||||||| ||||| |||| ||
Sbjct 15011 CATGTGCTGCGGTCTCTCCACAACCTTTCCAGAAACTTTCAACAGATATGACCTTTCGAG 15070
Query 70170 AGTTTTAAACCCAAAATAGTTGTATGAAAAGTCTCTTTCGTAAATAAT 70217
||||||||| ||||| |||| || |||||| | || ||||| ||
Sbjct 15071 AGTTTTAAATCCAAAGTAGTCATAGTCAAAGTCACGGTCATAAATTAT 15118
>seq2656
Length=42395
Score = 102 bits (112), Expect = 1e-16
Identities = 122/163 (75%), Gaps = 2/163 (1%)
Strand=Plus/Plus
Query 39616 GCAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAG 39675
|||||||||||| || || |||||||| || | | || | ||||| || || |||||
Sbjct 41665 GCAGGCGAAGTCGCAGTGGAGGCCCTCGTCGCGAGAGATGAGCTCGTTGGAGAACGTGAG 41724
Query 39676 TCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCA-AAAGATCCAGAAAAGA 39734
|||||||| || || ||||| |||||||| || || || ||| || || || || ||||
Sbjct 41725 GCCAGGCATGAGTCCGCGCTTCTTGAGCCAGAAGATTGC-GCAGAAGGAGCCGGAGAAGA 41783
Query 39735 AGATGCCTTCTACTGCTGCAAATGCAACAAGTCTCTCTCCGTA 39777
|||||||||| || || || ||||| || | ||| ||||
Sbjct 41784 AGATGCCTTCGACGCAGGCGAAGGCAACGAGGCGCTCGGCGTA 41826
>seq32078
Length=1569
Score = 89.7 bits (98), Expect = 7e-13
Identities = 101/133 (76%), Gaps = 2/133 (2%)
Strand=Plus/Minus
Query 39616 GCAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAG 39675
|||||||||||| || || || ||||| || | || | ||||| || || |||||
Sbjct 1149 GCAGGCGAAGTCGCAGTGGAGACCCTCGTCACGGGAGATGAGCTCGTTGGAGAAGGTGAG 1090
Query 39676 TCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAA-GATCCAGAAAAGA 39734
|||||||| || || ||||| |||||||| || |||| ||||||| || || || ||||
Sbjct 1089 CCCAGGCATGAGGCCCCGCTTCTTGAGCCAGAAGATGG-AGCAAAAGGAGCCGGAGAAGA 1031
Query 39735 AGATGCCTTCTAC 39747
|||| || || ||
Sbjct 1030 AGATACCCTCGAC 1018
>seq7765
Length=42474
Score = 89.7 bits (98), Expect = 7e-13
Identities = 101/133 (76%), Gaps = 2/133 (2%)
Strand=Plus/Plus
Query 39616 GCAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAG 39675
|||||||||||| || || || ||||| || | || | ||||| || || |||||
Sbjct 40034 GCAGGCGAAGTCGCAGTGGAGTCCCTCGTCACGGGAGATGAGCTCGTTGGAGAAGGTGAG 40093
Query 39676 TCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAA-GATCCAGAAAAGA 39734
|||||||| || || ||||| |||||||| || |||| ||||||| || || || ||||
Sbjct 40094 CCCAGGCATGAGGCCCCGCTTCTTGAGCCAGAAGATGG-AGCAAAAGGAGCCGGAGAAGA 40152
Query 39735 AGATGCCTTCTAC 39747
|||| || || ||
Sbjct 40153 AGATACCCTCGAC 40165
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 686562889901040
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |