Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eichhornia_20paniculata_20[genbank_20GCA_5F001647135.1_202016-05-02] 40,286 sequences; 571,388,321 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq2468 105 6e-18 seq2385 105 6e-18 seq2700 104 2e-17 seq490 95.1 1e-14 seq263 93.3 4e-14 seq564 89.7 4e-13 seq220 86.0 5e-12 >seq2468 Length=52418 Score = 105 bits (116), Expect = 6e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 27020 GCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCT 27079 ||| ||||| | || | || | ||| | || || || || || || ||||||||| Sbjct 10144 GCCACCGCGGAGGCGAAGGACGAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGC 10085 Query 27080 CATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGG 27139 | | ||||| ||||||| ||||| || |||||| | ||||| ||||| || |||||||| Sbjct 10084 AAGGGTGCGCCCGTCTTCAAGCTGCTTGCCGGCGAAGATGAGCCGCTGCTGGTCCGGCGG 10025 Query 27140 CACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAAC 27199 | ||||| || || |||||| || | | | || | ||||| | | || || Sbjct 10024 GATGCCCTCCTTGTCCTGGATCTTCGCCTTGACGTTGTCGATGGTGTCGGACGACTCCAC 9965 Query 27200 TTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || || || || | |||||||| || || ||||||||||| ||||| Sbjct 9964 CTCGAGGGTGATCGTCTTGCCCGTGAGGGTCTTCACAAAGATCTGCAT 9917 >seq2385 Length=44452 Score = 105 bits (116), Expect = 6e-18 Identities = 151/210 (72%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 27039 ACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTC-GCTCATGTTGCGCTCGTCTTC 27097 |||| ||| | || || || ||||||||||||||||| ||| | | ||||| |||| || Sbjct 35086 ACCAGATGCAGGGTCGACTCCTTTTGAATATTGTAGTCTGCT-AGGGTGCGCCCGTCCTC 35028 Query 27098 GAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGC 27157 ||||| || || || | ||||| | ||| || ||||| || | |||||||| || Sbjct 35027 AAGCTGCTTCCCAGCAAAGATGAGCCTCTGCTGGTCCGGAGGAATGCCCTCTTTGTCCTG 34968 Query 27158 GATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTT 27217 ||||| || | | | || | ||||||| | |||||| || || || || | || Sbjct 34967 AATCTTTGCCTTGACGTTGTCAATGGTGTCTGAAGATTCAACCTCAAGGGTAATGGTCTT 34908 Query 27218 GCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 ||| ||||| || || |||||||| ||||| Sbjct 34907 GCCAGTCAGGGTCTTGACAAAGATCTGCAT 34878 Score = 84.2 bits (92), Expect = 2e-11 Identities = 138/199 (69%), Gaps = 0/199 (0%) Strand=Plus/Minus Query 27050 CGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACC 27109 |||||| || ||||| || ||||| || || |||| | || || ||||| || || Sbjct 34847 CGTAGATTCCTTTTGGATGTTGTAATCAGCCAAAGTGCGTCCATCCTCAAGCTGCTTCCC 34788 Query 27110 GGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTT 27169 || ||||||| | || || ||||| || | ||||| || || ||||||| || Sbjct 34787 TGCAAAAATGAGCCTTTGCTGGTCCGGGGGGATGCCCTCCTTGTCTTGGATCTTGGCCTT 34728 Query 27170 CAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGT 27229 | | || | ||||| | | ||||| || || || || | |||||| ||||| || Sbjct 34727 AACATTGTCGATGGTGTCCGATGACTCAACCTCAAGGGTGATCGTTTTGCCAGTCAGCGT 34668 Query 27230 TTTCACAAAGATTTGCATA 27248 ||||||||||| |||||| Sbjct 34667 CTTCACAAAGATCTGCATA 34649 >seq2700 Length=42081 Score = 104 bits (114), Expect = 2e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 || || || || || || || |||||| | | |||| | || |||||||| || ||| Sbjct 28808 GTGGACTCCTTCTGGATGTTATAGTCGGCGAGGGTGCGGCCATCCTCGAGCTGCTTTCCG 28749 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170 ||| | ||||| ||||| || |||||||| | ||| || || || ||||||| ||| Sbjct 28748 GCGAAGATGAGCCGCTGCTGGTCCGGCGGGATACCTTCCTTGTCCTGGATCTTGGCCTTC 28689 Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230 | | | || | ||||| | | ||||| || || || || | || |||||||| || Sbjct 28688 ACGTTGTCGATGGTGTCCGACGACTCAACCTCAAGGGTGATCGTCTTCCCCGTCAGCGTC 28629 Query 27231 TTCACAAAGATTTGCAT 27247 ||||||||||| ||||| Sbjct 28628 TTCACAAAGATCTGCAT 28612 >seq490 Length=81643 Score = 95.1 bits (104), Expect = 1e-14 Identities = 149/211 (71%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 27039 ACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTC-GCTCATGTTGCGCTCGTCTTC 27097 |||| ||| | || || || ||||||||||||||||| ||| | | ||||| | || || Sbjct 59722 ACCAGATGCAGGGTTGACTCCTTTTGAATATTGTAGTCTGCT-AGGGTGCGCCCATCCTC 59664 Query 27098 GAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGC 27157 ||||| || || || | ||||| | |||||| || || || | |||||||| || Sbjct 59663 AAGCTGCTTCCCCGCAAAGATGAGCCTCTGTTGGTCTGGAGGAATGCCCTCTTTGTCCTG 59604 Query 27158 GATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTT 27217 || || || | | || | ||||||| | |||||| || || ||||| | || Sbjct 59603 AATTTTTGCCTTGACATTGTCAATGGTGTCTGAAGATTCAACCTCAAGGGTTATGGTCTT 59544 Query 27218 GCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 ||| |||||||| || || || || |||||| Sbjct 59543 GCCAGTCAGAGTCTTGACGAATATCTGCATA 59513 Score = 89.7 bits (98), Expect = 4e-13 Identities = 157/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 27019 TGCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGC 27078 |||| || || | ||| | || | || | ||| || || |||||||| |||||||| Sbjct 58830 TGCCACCACGAAGCCGAAGCACAAGGTGGAGCGTGGACTCCTTTTGAATGTTGTAGTCAG 58771 Query 27079 TCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCG 27138 || | |||| | || || | || || || || | || |||||||| || ||||| | Sbjct 58770 CCAGGGTGCGACCATCCTCCAATTGCTTGCCTGCAAAGATCAGACGCTGCTGGTCCGGGG 58711 Query 27139 GCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAA 27198 | | ||||| || || ||||||| || | | || | ||| |||| | |||| Sbjct 58710 GGATTCCCTCCTTGTCCTGGATCTTGGCCTTGACATTGTCAATAGTATCTGAAGACTCAA 58651 Query 27199 CTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 | || ||||| || | ||||| |||| || ||||||||||| ||||| Sbjct 58650 CCTCAAGAGTGATTGTCTTGCCTGTCAAGGTCTTCACAAAGATCTGCAT 58602 >seq263 Length=97214 Score = 93.3 bits (102), Expect = 4e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 27039 ACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCG 27098 ||||| || | || || || || ||||||||||||||| || | |||| | || || Sbjct 77869 ACCAAGTGCAGGGTGGATTCCTTCTGAATATTGTAGTCGGCCAAGGTGCGGCCATCCTCA 77928 Query 27099 AGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCG 27158 ||||| || || ||| | ||||| | ||| |||||||| || | |||||| || || | Sbjct 77929 AGCTGCTTTCCAGCGAAGATGAGCCTCTGCTGATCCGGGGGAATACCCTCCTTGTCCTGG 77988 Query 27159 ATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTG 27218 || ||| ||| | | || | ||||| | | || || || || ||||| | ||| Sbjct 77989 ATTTTGGCTTTAACATTGTCAATGGTGTCCGAGCTCTCGACCTCAAGGGTTATGGTCTTG 78048 Query 27219 CCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || || || || || || ||||| ||||| Sbjct 78049 CCAGTGAGCGTCTTGACGAAGATCTGCAT 78077 >seq564 Length=78751 Score = 89.7 bits (98), Expect = 4e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 || || || || || || |||||||| | | |||| |||| ||||| || || ||| Sbjct 11257 GTGGACTCCTTCTGGATGTTGTAGTCAGCAAGGGTGCGTCCGTCCTCGAGTTGCTTTCCG 11316 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170 ||| | ||||||||||| || |||||||| | || || || || ||||| ||| Sbjct 11317 GCGAATATGAGACGCTGCTGGTCCGGCGGGATCCCTTCCTTGTCCTGAATCTTCGCCTTC 11376 Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230 | | | || | ||||| | | || || || || || || | || |||||||| ||| Sbjct 11377 ACGTTGTCGATGGTGTCCGACGACTCCACCTCGAGGGTGATCGTCTTCCCCGTCAGCGTT 11436 Query 27231 TTCACAAAGATTTGCAT 27247 ||||| ||||| ||||| Sbjct 11437 TTCACGAAGATCTGCAT 11453 >seq220 Length=196394 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080 || ||||| | || | |||| ||| | || || ||||| ||||| || ||||| | Sbjct 148772 CCACCGCGGAGACGAAGCACCAGATGGAGAGTGGACTCTTTCTGAATGTTATAGTCTGCC 148831 Query 27081 ATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGC 27140 | ||||| | || || ||||| || || ||| | ||||| | ||| || |||||||| Sbjct 148832 AAAGTGCGCCCATCCTCCAGCTGCTTCCCAGCGAAGATGAGTCTCTGCTGGTCCGGCGGG 148891 Query 27141 ACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACT 27200 | ||||| || || |||||| |||| | || | |||||| | | || || Sbjct 148892 ATCCCCTCCTTGTCTTGGATCTTCGCCTTCACATTATCAATAGTGTCAGAGCTCTCCACC 148951 Query 27201 TCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || || || || | || || || || || ||||| ||||||||||| Sbjct 148952 TCCAGGGTAATGGTCTTACCAGTGAGGGTCTTCACGAAGATTTGCAT 148998 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424725763318032