Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eichhornia_20paniculata_20[genbank_20GCA_5F001647135.1_202016-05-02] 40,286 sequences; 571,388,321 total letters Query= NC_027925.1 Length=496396 Score E Sequences producing significant alignments: (Bits) Value seq32078 98.7 3e-15 seq7765 95.1 4e-14 seq2656 89.7 2e-12 seq2510 89.7 2e-12 >seq32078 Length=1569 Score = 98.7 bits (108), Expect = 3e-15 Identities = 127/174 (73%), Gaps = 1/174 (1%) Strand=Plus/Plus Query 443699 CTTCGTCGAGCGACTAGTCGCTTTTGCTGTGGTCGAAGGACTGTTGTTTAGCGGCAGCTT 443758 ||| | |||||| | ||||| ||||| ||||| || | || || |||| ||| Sbjct 987 CTTTGCCGAGCGCATCGTCGCCTTTGCCTGCGTCGAGGGTATCTTCTTCTCCGGCTCCTT 1046 Query 443759 TAGCCTCCATCTTCTGGTTGAAAAAGCGTGGACTTATGCACGGTCTGACCTTTAGTAACG 443818 | || |||||||||||| | || ||||| || || |||| || || ||||| |||| Sbjct 1047 TTGC-TCCATCTTCTGGCTCAAGAAGCGGGGCCTCATGCCTGGGCTCACCTTCTCCAACG 1105 Query 443819 AACTGATCAGTCGGGACGAGGGTTTGCATTGCGACTTCGCCTGTCTTCTCTACA 443872 | || ||| || ||||||||| | || |||||||||||||| || ||||||| Sbjct 1106 AGCTCATCTCCCGTGACGAGGGTCTCCACTGCGACTTCGCCTGCCTCCTCTACA 1159 >seq7765 Length=42474 Score = 95.1 bits (104), Expect = 4e-14 Identities = 126/174 (72%), Gaps = 1/174 (1%) Strand=Plus/Minus Query 443699 CTTCGTCGAGCGACTAGTCGCTTTTGCTGTGGTCGAAGGACTGTTGTTTAGCGGCAGCTT 443758 ||| | |||||| | ||||| ||||| ||||| || | || || |||| ||| Sbjct 40196 CTTTGCCGAGCGCATCGTCGCCTTTGCCTGCGTCGAGGGTATCTTCTTCTCCGGCTCCTT 40137 Query 443759 TAGCCTCCATCTTCTGGTTGAAAAAGCGTGGACTTATGCACGGTCTGACCTTTAGTAACG 443818 | || |||||||||||| | || ||||| || || |||| || || ||||| |||| Sbjct 40136 TTGC-TCCATCTTCTGGCTCAAGAAGCGGGGCCTCATGCCTGGGCTCACCTTCTCCAACG 40078 Query 443819 AACTGATCAGTCGGGACGAGGGTTTGCATTGCGACTTCGCCTGTCTTCTCTACA 443872 | || ||| || |||||||| | || |||||||||||||| || ||||||| Sbjct 40077 AGCTCATCTCCCGTGACGAGGGACTCCACTGCGACTTCGCCTGCCTCCTCTACA 40024 >seq2656 Length=42395 Score = 89.7 bits (98), Expect = 2e-12 Identities = 125/174 (72%), Gaps = 1/174 (1%) Strand=Plus/Minus Query 443699 CTTCGTCGAGCGACTAGTCGCTTTTGCTGTGGTCGAAGGACTGTTGTTTAGCGGCAGCTT 443758 || || |||||| || || || || || |||||||| | || || |||| ||| Sbjct 41827 CTACGCCGAGCGCCTCGTTGCCTTCGCCTGCGTCGAAGGCATCTTCTTCTCCGGCTCCTT 41768 Query 443759 TAGCCTCCATCTTCTGGTTGAAAAAGCGTGGACTTATGCACGGTCTGACCTTTAGTAACG 443818 || | ||||||||| | || ||||| ||||| |||| || || || || |||| Sbjct 41767 CTGCG-CAATCTTCTGGCTCAAGAAGCGCGGACTCATGCCTGGCCTCACGTTCTCCAACG 41709 Query 443819 AACTGATCAGTCGGGACGAGGGTTTGCATTGCGACTTCGCCTGTCTTCTCTACA 443872 | || ||| ||| |||||||| | || |||||||||||||| |||||||||| Sbjct 41708 AGCTCATCTCTCGCGACGAGGGCCTCCACTGCGACTTCGCCTGCCTTCTCTACA 41655 >seq2510 Length=43382 Score = 89.7 bits (98), Expect = 2e-12 Identities = 125/174 (72%), Gaps = 1/174 (1%) Strand=Plus/Plus Query 443699 CTTCGTCGAGCGACTAGTCGCTTTTGCTGTGGTCGAAGGACTGTTGTTTAGCGGCAGCTT 443758 ||| | |||||| | ||||| ||||| ||||| || | || || |||| ||| Sbjct 21081 CTTTGCCGAGCGCATCGTCGCCTTTGCCTGCGTCGAGGGTATCTTCTTCTCCGGCTCCTT 21140 Query 443759 TAGCCTCCATCTTCTGGTTGAAAAAGCGTGGACTTATGCACGGTCTGACCTTTAGTAACG 443818 || |||||||||||| | || ||||| || || |||| || || ||||| |||| Sbjct 21141 CTGC-TCCATCTTCTGGCTCAAGAAGCGAGGCCTCATGCCTGGGCTAACCTTCTCCAACG 21199 Query 443819 AACTGATCAGTCGGGACGAGGGTTTGCATTGCGACTTCGCCTGTCTTCTCTACA 443872 | || ||| || |||||||| | || |||||||||||||| || ||||||| Sbjct 21200 AGCTCATCTCCCGTGACGAGGGACTCCACTGCGACTTCGCCTGCCTCCTCTACA 21253 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1587516157541270