Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Eichhornia_20paniculata_20[genbank_20GCA_5F001647135.1_202016-05-02]
40,286 sequences; 571,388,321 total letters
Query= NC_028091.1
Length=196300
Score E
Sequences producing significant alignments: (Bits) Value
seq4174 140 4e-28
seq4514 138 1e-27
seq70 138 1e-27
seq32078 127 3e-24
seq7765 123 3e-23
seq2510 122 1e-22
seq2656 109 7e-19
>seq4174
Length=33674
Score = 140 bits (154), Expect = 4e-28
Identities = 248/362 (69%), Gaps = 0/362 (0%)
Strand=Plus/Plus
Query 11453 TCAAAACGACCCGGGCGAAGGAGGGCGTCATCAAGGATATCCACGCGATTAGTGGCCGCA 11512
|||||||| || || | ||| || || ||| | ||||| | ||||| ||||| |||
Sbjct 22944 TCAAAACGTCCAGGCCTAAGAAGAGCAGAATCCAATATATCTGCACGATTGGTGGCTGCA 23003
Query 11513 ATAACCACAATGCCAGTCTCATTGTCAAAGCCATCCATCTCGGTGAGTAATTGATTAATT 11572
|| || | || ||||| | | ||||| |||||||||||||| | | |||||| |
Sbjct 23004 ATTACAATTATACCAGTATTACCCTCAAAACCATCCATCTCGGTCAAAAGTTGATTTAGA 23063
Query 11573 GTTTGTTCTCTCTCATCATTTGCTGGCATACCACCAGCACTGCGTTGCTTGCCCACCGCA 11632
|| |||||||| ||||||||| || | | || | | | ||| | || || |||
Sbjct 23064 GTCTGTTCTCTTTCATCATTTCCTCCCCCAATGCCTGTTCCTCTTTGTCTCCCAACAGCA 23123
Query 11633 TCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATTTCAAAGAGATCG 11692
||||| || |||| || |||||||| ||| ||| || || ||| || |||||
Sbjct 23124 TCAATTTCGTCAACAAAAACAATACAAGGTGCATTCTCTTTTGCCTTTTTGAAAAGATCA 23183
Query 11693 CGAACCCTTTTGGCACCCACACCAACAAACATCTCCACAAAGTTTGCGGCAGAGCACTGG 11752
|| || | | ||||| ||||||||||||||||| ||||| | || | || |
Sbjct 23184 CGGACTCGTGAAGCACCGACACCAACAAACATCTCAACAAATTCTGATCCCGAAATAGAG 23243
Query 11753 ATGAATGGGACATTTGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTTTCCCGTACCT 11812
| |||||||| | ||||| || || ||| || || || |||||||| || |||
Sbjct 23244 AAAAATGGGACTCCAGCCTCACCTGCAATAGCTTTAGCAAGAAGAGTCTTTCCAGTCCCT 23303
Query 11813 GG 11814
||
Sbjct 23304 GG 23305
>seq4514
Length=32024
Score = 138 bits (152), Expect = 1e-27
Identities = 223/318 (70%), Gaps = 2/318 (1%)
Strand=Plus/Plus
Query 11498 CGATTAGTGGCCGCAATAACCACAATGCCAGTCTCATTGTCAAAGCCATCCATCTCGGTG 11557
|| || || || ||||| || | || ||||| | ||||||||||||||||| ||
Sbjct 21808 CGGTTTGTAGCAGCAATGACAATGATACCAGTATTTCCTTCAAAGCCATCCATCTCAGTT 21867
Query 11558 AGTAATTGATTAATTGTTTGTTCTCTCTCATCATTTGCTGGCATACCACCAGCACTGCGT 11617
| | || |||| ||||||||| || ||||||||| | | ||| | | | |
Sbjct 21868 AAGAGCTGGTTAAGTGTTTGTTCCCTTTCATCATTTCCACCTCCAATACCTGTTCCTCTT 21927
Query 11618 TGCTTGCCCACCGCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCG 11677
||| | || || |||||||||||||||| ||| ||||| |||||| |||||| |||
Sbjct 21928 TGCCTTCCAACAGCATCAATCTCATCAACGAAAACAATGCATGGTGCATTTTCTTTGGCC 21987
Query 11678 ATTTCAAAGAGATCGCGAACCCTTTTGGCACCCACACCAACAAACATCTCCACAAAGTTT 11737
| | || ||||| ||||| ||| ||||| ||||||||||||||||| ||||| |
Sbjct 21988 TTCTTGAAAAGATCACGAACTCTTGAAGCACCAACACCAACAAACATCTCTACAAACTCG 22047
Query 11738 GCGGCAGAGCACTG-GATGAATGGGACATTTGATTCACCCGCGATGGCTCGGGCGAGGAG 11796
| |||| | || || ||||| ||| | |||||| || || || || || ||
Sbjct 22048 GAACCAGA-AATTGAGAAAAATGGAACACCAGCTTCACCAGCAATTGCCTTAGCCAGCAG 22106
Query 11797 GGTCTTTCCCGTACCTGG 11814
||||| || || |||||
Sbjct 22107 TGTCTTCCCAGTGCCTGG 22124
>seq70
Length=129315
Score = 138 bits (152), Expect = 1e-27
Identities = 329/490 (67%), Gaps = 8/490 (2%)
Strand=Plus/Plus
Query 11453 TCAAAACGACCCGGGCGAAGGAGGGCGTCATCAAGGATATCCACGCGATTAGTGGCCGCA 11512
||||| || || || | || | |||| ||| | || || | || || || || |||
Sbjct 36435 TCAAATCGTCCAGGCCTCAGTAAGGCGGAATCTAAAATGTCTGCACGGTTTGTAGCTGCA 36494
Query 11513 ATAACCACAATGCCAGTCTCATTGTCAAAGCCATCCATCTCGGTGAGTAATTGATTAATT 11572
||||| | | ||||| | ||||||||||||||||| || | | || ||||
Sbjct 36495 ATAACAATGACACCAGTGTTTCCTTCAAAGCCATCCATCTCAGTTAAGAGCTGGTTAAGC 36554
Query 11573 GTTTGTTCTCTCTCATCATTTGCTGGCATACCA--CCAGCACTGCGTTGCTTGCCCACCG 11630
||||||||||||||||||||| | | | | | || || | | |||| | || || |
Sbjct 36555 GTTTGTTCTCTCTCATCATTTCCA--CCTCCAATTCCTGCTCCTCTTTGCCTTCCAACTG 36612
Query 11631 CATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATTTCAAAGAGAT 11690
||||||| ||||||| ||| ||||| |||||| |||||| ||| | | || || |
Sbjct 36613 CATCAATTTCATCAACGAAAACAATGCATGGTGCATTTTCTTTGGCCTTCTTGAAAAGTT 36672
Query 11691 CGCGAACCCTTTTGGCACCCACACCAACAAACATCTCCACAAAGTTTGCGGCAGAGCACT 11750
| ||||| ||| ||||| || || ||||||||||| ||||| | | | || | |
Sbjct 36673 CACGAACTCTTGAAGCACCAACGCCGACAAACATCTCTACAAACTCAGAACCTGA-AATT 36731
Query 11751 G-GATGAATGGGACATTTGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTTTCCCGTA 11809
| || ||||| ||| | |||||| ||||| || || || || ||||| || |||
Sbjct 36732 GAGAAAAATGGAACACCAGCTTCACCGGCGATTGCCTTAGCCAGCAGTGTCTTCCCAGTA 36791
Query 11810 CCTGGCTTACCCGCGAGAAGGGCGCCTCGGGGGATCTTGGCACCACTTCCAAAATATCTC 11869
|| || ||| | ||||| | ||| || || ||||| | || | |||
Sbjct 36792 CCCGGAGGACCAACAAGAAGAACACCTTTAGGAATTCGTGCACCGACTGCAGTGAACCTC 36851
Query 11870 TCGGGTTGCTTGAGAAAATCCACAA-TCTCTTCAAGTTCATCTTTGGCCGCGTCAATCCC 11928
|| |||| ||| ||||| || |||| | | | |||| | |||| || | |||| ||
Sbjct 36852 TCTGGTTTCTTCAGAAATTCTACAACTTCCATGAAGTCCTGCTTT-GCTTCATCAACACC 36910
Query 11929 CTCAACATCA 11938
||||||||
Sbjct 36911 AGCAACATCA 36920
>seq32078
Length=1569
Score = 127 bits (140), Expect = 3e-24
Identities = 163/223 (73%), Gaps = 5/223 (2%)
Strand=Plus/Minus
Query 122670 GTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGCATGAGACC 122729
|||||||||||| || ||||| || || || || |||||| || || |||||||| ||
Sbjct 1134 GTGGAGACCCTCGTCACGGGAGATGAGCTCGTTGGAGAAGGTGAGCCCAGGCATGAGGCC 1075
Query 122730 CCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACA 122789
||||||||| | ||| | || | ||| || || |||||||||||||||||||| || ||
Sbjct 1074 CCGCTTCTTGAGCCAGAAGATGGAGCAAAAGGAGCCGGAGAAGAAGATACCCTCGACGCA 1015
Query 122790 CGCAAACGCAAAAAGGCGTTCGGCGAAGGAGCGAGAC-TTTGCATCAAACCATTTCATTG 122848
||||| || | | ||| ||||| ||||||| ||| || ||| ||| || |
Sbjct 1014 GGCAAAGGCGACGATGCGCTCGGCAAAGGAGCTCGACGAGTGGATCCAAC----GCAGAG 959
Query 122849 CCCATTTCGCCTTCTTCTCAATACATGGTACAGTTTGGATGGC 122891
|||| | |||||||| | | || || || |||| ||| ||
Sbjct 958 CCCAGTCGGCCTTCTTTCCGACGCAGGGGACGGTTTCGATCGC 916
>seq7765
Length=42474
Score = 123 bits (136), Expect = 3e-23
Identities = 162/223 (73%), Gaps = 5/223 (2%)
Strand=Plus/Plus
Query 122670 GTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGCATGAGACC 122729
|||||| ||||| || ||||| || || || || |||||| || || |||||||| ||
Sbjct 40049 GTGGAGTCCCTCGTCACGGGAGATGAGCTCGTTGGAGAAGGTGAGCCCAGGCATGAGGCC 40108
Query 122730 CCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACA 122789
||||||||| | ||| | || | ||| || || |||||||||||||||||||| || ||
Sbjct 40109 CCGCTTCTTGAGCCAGAAGATGGAGCAAAAGGAGCCGGAGAAGAAGATACCCTCGACGCA 40168
Query 122790 CGCAAACGCAAAAAGGCGTTCGGCGAAGGAGCGAGAC-TTTGCATCAAACCATTTCATTG 122848
||||| || | | ||| ||||| ||||||| ||| || ||| ||| || |
Sbjct 40169 GGCAAAGGCGACGATGCGCTCGGCAAAGGAGCTCGACGAGTGGATCCAAC----GCAGAG 40224
Query 122849 CCCATTTCGCCTTCTTCTCAATACATGGTACAGTTTGGATGGC 122891
|||| | |||||||| | | || || || |||| ||| ||
Sbjct 40225 CCCAGTCGGCCTTCTTTCCGACGCAGGGGACGGTTTCGATCGC 40267
>seq2510
Length=43382
Score = 122 bits (134), Expect = 1e-22
Identities = 117/150 (78%), Gaps = 0/150 (0%)
Strand=Plus/Minus
Query 122670 GTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGCATGAGACC 122729
|||||| ||||| || ||||| || || || || |||||| ||| || |||||||| ||
Sbjct 21228 GTGGAGTCCCTCGTCACGGGAGATGAGCTCGTTGGAGAAGGTTAGCCCAGGCATGAGGCC 21169
Query 122730 CCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACA 122789
|||||||| | ||| | || | |||||| || |||||||||||||||||||| || ||
Sbjct 21168 TCGCTTCTTGAGCCAGAAGATGGAGCAGAAGGAGCCGGAGAAGAAGATACCCTCGACGCA 21109
Query 122790 CGCAAACGCAAAAAGGCGTTCGGCGAAGGA 122819
||||| || | | ||| ||||| |||||
Sbjct 21108 GGCAAAGGCGACGATGCGCTCGGCAAAGGA 21079
>seq2656
Length=42395
Score = 109 bits (120), Expect = 7e-19
Identities = 114/150 (76%), Gaps = 0/150 (0%)
Strand=Plus/Plus
Query 122670 GTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGCATGAGACC 122729
|||||| ||||| || || || || || || || ||||| || || |||||||| ||
Sbjct 41680 GTGGAGGCCCTCGTCGCGAGAGATGAGCTCGTTGGAGAACGTGAGGCCAGGCATGAGTCC 41739
Query 122730 CCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACA 122789
|||||||| | ||| | || |||||||| || |||||||||||||| || || || ||
Sbjct 41740 GCGCTTCTTGAGCCAGAAGATTGCGCAGAAGGAGCCGGAGAAGAAGATGCCTTCGACGCA 41799
Query 122790 CGCAAACGCAAAAAGGCGTTCGGCGAAGGA 122819
|| || |||| ||||| |||||| ||||
Sbjct 41800 GGCGAAGGCAACGAGGCGCTCGGCGTAGGA 41829
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 627715738785600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |