Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eichhornia_20paniculata_20[genbank_20GCA_5F001647135.1_202016-05-02] 40,286 sequences; 571,388,321 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq4174 140 4e-28 seq4514 138 1e-27 seq70 138 1e-27 seq32078 127 3e-24 seq7765 123 3e-23 seq2510 122 1e-22 seq2656 109 7e-19 >seq4174 Length=33674 Score = 140 bits (154), Expect = 4e-28 Identities = 248/362 (69%), Gaps = 0/362 (0%) Strand=Plus/Plus Query 11453 TCAAAACGACCCGGGCGAAGGAGGGCGTCATCAAGGATATCCACGCGATTAGTGGCCGCA 11512 |||||||| || || | ||| || || ||| | ||||| | ||||| ||||| ||| Sbjct 22944 TCAAAACGTCCAGGCCTAAGAAGAGCAGAATCCAATATATCTGCACGATTGGTGGCTGCA 23003 Query 11513 ATAACCACAATGCCAGTCTCATTGTCAAAGCCATCCATCTCGGTGAGTAATTGATTAATT 11572 || || | || ||||| | | ||||| |||||||||||||| | | |||||| | Sbjct 23004 ATTACAATTATACCAGTATTACCCTCAAAACCATCCATCTCGGTCAAAAGTTGATTTAGA 23063 Query 11573 GTTTGTTCTCTCTCATCATTTGCTGGCATACCACCAGCACTGCGTTGCTTGCCCACCGCA 11632 || |||||||| ||||||||| || | | || | | | ||| | || || ||| Sbjct 23064 GTCTGTTCTCTTTCATCATTTCCTCCCCCAATGCCTGTTCCTCTTTGTCTCCCAACAGCA 23123 Query 11633 TCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATTTCAAAGAGATCG 11692 ||||| || |||| || |||||||| ||| ||| || || ||| || ||||| Sbjct 23124 TCAATTTCGTCAACAAAAACAATACAAGGTGCATTCTCTTTTGCCTTTTTGAAAAGATCA 23183 Query 11693 CGAACCCTTTTGGCACCCACACCAACAAACATCTCCACAAAGTTTGCGGCAGAGCACTGG 11752 || || | | ||||| ||||||||||||||||| ||||| | || | || | Sbjct 23184 CGGACTCGTGAAGCACCGACACCAACAAACATCTCAACAAATTCTGATCCCGAAATAGAG 23243 Query 11753 ATGAATGGGACATTTGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTTTCCCGTACCT 11812 | |||||||| | ||||| || || ||| || || || |||||||| || ||| Sbjct 23244 AAAAATGGGACTCCAGCCTCACCTGCAATAGCTTTAGCAAGAAGAGTCTTTCCAGTCCCT 23303 Query 11813 GG 11814 || Sbjct 23304 GG 23305 >seq4514 Length=32024 Score = 138 bits (152), Expect = 1e-27 Identities = 223/318 (70%), Gaps = 2/318 (1%) Strand=Plus/Plus Query 11498 CGATTAGTGGCCGCAATAACCACAATGCCAGTCTCATTGTCAAAGCCATCCATCTCGGTG 11557 || || || || ||||| || | || ||||| | ||||||||||||||||| || Sbjct 21808 CGGTTTGTAGCAGCAATGACAATGATACCAGTATTTCCTTCAAAGCCATCCATCTCAGTT 21867 Query 11558 AGTAATTGATTAATTGTTTGTTCTCTCTCATCATTTGCTGGCATACCACCAGCACTGCGT 11617 | | || |||| ||||||||| || ||||||||| | | ||| | | | | Sbjct 21868 AAGAGCTGGTTAAGTGTTTGTTCCCTTTCATCATTTCCACCTCCAATACCTGTTCCTCTT 21927 Query 11618 TGCTTGCCCACCGCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCG 11677 ||| | || || |||||||||||||||| ||| ||||| |||||| |||||| ||| Sbjct 21928 TGCCTTCCAACAGCATCAATCTCATCAACGAAAACAATGCATGGTGCATTTTCTTTGGCC 21987 Query 11678 ATTTCAAAGAGATCGCGAACCCTTTTGGCACCCACACCAACAAACATCTCCACAAAGTTT 11737 | | || ||||| ||||| ||| ||||| ||||||||||||||||| ||||| | Sbjct 21988 TTCTTGAAAAGATCACGAACTCTTGAAGCACCAACACCAACAAACATCTCTACAAACTCG 22047 Query 11738 GCGGCAGAGCACTG-GATGAATGGGACATTTGATTCACCCGCGATGGCTCGGGCGAGGAG 11796 | |||| | || || ||||| ||| | |||||| || || || || || || Sbjct 22048 GAACCAGA-AATTGAGAAAAATGGAACACCAGCTTCACCAGCAATTGCCTTAGCCAGCAG 22106 Query 11797 GGTCTTTCCCGTACCTGG 11814 ||||| || || ||||| Sbjct 22107 TGTCTTCCCAGTGCCTGG 22124 >seq70 Length=129315 Score = 138 bits (152), Expect = 1e-27 Identities = 329/490 (67%), Gaps = 8/490 (2%) Strand=Plus/Plus Query 11453 TCAAAACGACCCGGGCGAAGGAGGGCGTCATCAAGGATATCCACGCGATTAGTGGCCGCA 11512 ||||| || || || | || | |||| ||| | || || | || || || || ||| Sbjct 36435 TCAAATCGTCCAGGCCTCAGTAAGGCGGAATCTAAAATGTCTGCACGGTTTGTAGCTGCA 36494 Query 11513 ATAACCACAATGCCAGTCTCATTGTCAAAGCCATCCATCTCGGTGAGTAATTGATTAATT 11572 ||||| | | ||||| | ||||||||||||||||| || | | || |||| Sbjct 36495 ATAACAATGACACCAGTGTTTCCTTCAAAGCCATCCATCTCAGTTAAGAGCTGGTTAAGC 36554 Query 11573 GTTTGTTCTCTCTCATCATTTGCTGGCATACCA--CCAGCACTGCGTTGCTTGCCCACCG 11630 ||||||||||||||||||||| | | | | | || || | | |||| | || || | Sbjct 36555 GTTTGTTCTCTCTCATCATTTCCA--CCTCCAATTCCTGCTCCTCTTTGCCTTCCAACTG 36612 Query 11631 CATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATTTCAAAGAGAT 11690 ||||||| ||||||| ||| ||||| |||||| |||||| ||| | | || || | Sbjct 36613 CATCAATTTCATCAACGAAAACAATGCATGGTGCATTTTCTTTGGCCTTCTTGAAAAGTT 36672 Query 11691 CGCGAACCCTTTTGGCACCCACACCAACAAACATCTCCACAAAGTTTGCGGCAGAGCACT 11750 | ||||| ||| ||||| || || ||||||||||| ||||| | | | || | | Sbjct 36673 CACGAACTCTTGAAGCACCAACGCCGACAAACATCTCTACAAACTCAGAACCTGA-AATT 36731 Query 11751 G-GATGAATGGGACATTTGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTTTCCCGTA 11809 | || ||||| ||| | |||||| ||||| || || || || ||||| || ||| Sbjct 36732 GAGAAAAATGGAACACCAGCTTCACCGGCGATTGCCTTAGCCAGCAGTGTCTTCCCAGTA 36791 Query 11810 CCTGGCTTACCCGCGAGAAGGGCGCCTCGGGGGATCTTGGCACCACTTCCAAAATATCTC 11869 || || ||| | ||||| | ||| || || ||||| | || | ||| Sbjct 36792 CCCGGAGGACCAACAAGAAGAACACCTTTAGGAATTCGTGCACCGACTGCAGTGAACCTC 36851 Query 11870 TCGGGTTGCTTGAGAAAATCCACAA-TCTCTTCAAGTTCATCTTTGGCCGCGTCAATCCC 11928 || |||| ||| ||||| || |||| | | | |||| | |||| || | |||| || Sbjct 36852 TCTGGTTTCTTCAGAAATTCTACAACTTCCATGAAGTCCTGCTTT-GCTTCATCAACACC 36910 Query 11929 CTCAACATCA 11938 |||||||| Sbjct 36911 AGCAACATCA 36920 >seq32078 Length=1569 Score = 127 bits (140), Expect = 3e-24 Identities = 163/223 (73%), Gaps = 5/223 (2%) Strand=Plus/Minus Query 122670 GTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGCATGAGACC 122729 |||||||||||| || ||||| || || || || |||||| || || |||||||| || Sbjct 1134 GTGGAGACCCTCGTCACGGGAGATGAGCTCGTTGGAGAAGGTGAGCCCAGGCATGAGGCC 1075 Query 122730 CCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACA 122789 ||||||||| | ||| | || | ||| || || |||||||||||||||||||| || || Sbjct 1074 CCGCTTCTTGAGCCAGAAGATGGAGCAAAAGGAGCCGGAGAAGAAGATACCCTCGACGCA 1015 Query 122790 CGCAAACGCAAAAAGGCGTTCGGCGAAGGAGCGAGAC-TTTGCATCAAACCATTTCATTG 122848 ||||| || | | ||| ||||| ||||||| ||| || ||| ||| || | Sbjct 1014 GGCAAAGGCGACGATGCGCTCGGCAAAGGAGCTCGACGAGTGGATCCAAC----GCAGAG 959 Query 122849 CCCATTTCGCCTTCTTCTCAATACATGGTACAGTTTGGATGGC 122891 |||| | |||||||| | | || || || |||| ||| || Sbjct 958 CCCAGTCGGCCTTCTTTCCGACGCAGGGGACGGTTTCGATCGC 916 >seq7765 Length=42474 Score = 123 bits (136), Expect = 3e-23 Identities = 162/223 (73%), Gaps = 5/223 (2%) Strand=Plus/Plus Query 122670 GTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGCATGAGACC 122729 |||||| ||||| || ||||| || || || || |||||| || || |||||||| || Sbjct 40049 GTGGAGTCCCTCGTCACGGGAGATGAGCTCGTTGGAGAAGGTGAGCCCAGGCATGAGGCC 40108 Query 122730 CCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACA 122789 ||||||||| | ||| | || | ||| || || |||||||||||||||||||| || || Sbjct 40109 CCGCTTCTTGAGCCAGAAGATGGAGCAAAAGGAGCCGGAGAAGAAGATACCCTCGACGCA 40168 Query 122790 CGCAAACGCAAAAAGGCGTTCGGCGAAGGAGCGAGAC-TTTGCATCAAACCATTTCATTG 122848 ||||| || | | ||| ||||| ||||||| ||| || ||| ||| || | Sbjct 40169 GGCAAAGGCGACGATGCGCTCGGCAAAGGAGCTCGACGAGTGGATCCAAC----GCAGAG 40224 Query 122849 CCCATTTCGCCTTCTTCTCAATACATGGTACAGTTTGGATGGC 122891 |||| | |||||||| | | || || || |||| ||| || Sbjct 40225 CCCAGTCGGCCTTCTTTCCGACGCAGGGGACGGTTTCGATCGC 40267 >seq2510 Length=43382 Score = 122 bits (134), Expect = 1e-22 Identities = 117/150 (78%), Gaps = 0/150 (0%) Strand=Plus/Minus Query 122670 GTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGCATGAGACC 122729 |||||| ||||| || ||||| || || || || |||||| ||| || |||||||| || Sbjct 21228 GTGGAGTCCCTCGTCACGGGAGATGAGCTCGTTGGAGAAGGTTAGCCCAGGCATGAGGCC 21169 Query 122730 CCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACA 122789 |||||||| | ||| | || | |||||| || |||||||||||||||||||| || || Sbjct 21168 TCGCTTCTTGAGCCAGAAGATGGAGCAGAAGGAGCCGGAGAAGAAGATACCCTCGACGCA 21109 Query 122790 CGCAAACGCAAAAAGGCGTTCGGCGAAGGA 122819 ||||| || | | ||| ||||| ||||| Sbjct 21108 GGCAAAGGCGACGATGCGCTCGGCAAAGGA 21079 >seq2656 Length=42395 Score = 109 bits (120), Expect = 7e-19 Identities = 114/150 (76%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 122670 GTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGCATGAGACC 122729 |||||| ||||| || || || || || || || ||||| || || |||||||| || Sbjct 41680 GTGGAGGCCCTCGTCGCGAGAGATGAGCTCGTTGGAGAACGTGAGGCCAGGCATGAGTCC 41739 Query 122730 CCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACA 122789 |||||||| | ||| | || |||||||| || |||||||||||||| || || || || Sbjct 41740 GCGCTTCTTGAGCCAGAAGATTGCGCAGAAGGAGCCGGAGAAGAAGATGCCTTCGACGCA 41799 Query 122790 CGCAAACGCAAAAAGGCGTTCGGCGAAGGA 122819 || || |||| ||||| |||||| |||| Sbjct 41800 GGCGAAGGCAACGAGGCGCTCGGCGTAGGA 41829 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 627715738785600