Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eichhornia_20paniculata_20[genbank_20GCA_5F001647135.1_202016-05-02] 40,286 sequences; 571,388,321 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq32078 159 4e-34 seq7765 154 2e-32 seq2510 154 2e-32 seq2656 145 9e-30 seq4514 138 1e-27 seq70 118 1e-21 seq4174 95.1 1e-14 seq3117 82.4 9e-11 >seq32078 Length=1569 Score = 159 bits (176), Expect = 4e-34 Identities = 170/223 (76%), Gaps = 5/223 (2%) Strand=Plus/Minus Query 130027 GTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACC 130086 ||||||||||||||||||||||||||| || || |||||| || || |||||||| || Sbjct 1134 GTGGAGACCCTCGTCACGGGAGATGAGCTCGTTGGAGAAGGTGAGCCCAGGCATGAGGCC 1075 Query 130087 CCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACA 130146 ||||||||| | |||||| || | ||||| ||||| ||||||||||| ||||| || || Sbjct 1074 CCGCTTCTTGAGCCAGAAGATGGAGCAAAAGGAGCCGGAGAAGAAGATACCCTCGACGCA 1015 Query 130147 CGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGGGAC-TTTGTATCAAACCACTTCATCG 130205 || || || | || ||||| |||||||||| ||| || ||| ||| || | Sbjct 1014 GGCAAAGGCGACGATGCGCTCGGCAAAGGAGCTCGACGAGTGGATCCAAC----GCAGAG 959 Query 130206 CCCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGC 130248 |||| | ||||| || ||| || |||||||| | |||||| Sbjct 958 CCCAGTCGGCCTTCTTTCCGACGCAGGGGACGGTTTCGATCGC 916 >seq7765 Length=42474 Score = 154 bits (170), Expect = 2e-32 Identities = 169/223 (76%), Gaps = 5/223 (2%) Strand=Plus/Plus Query 130027 GTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACC 130086 |||||| |||||||||||||||||||| || || |||||| || || |||||||| || Sbjct 40049 GTGGAGTCCCTCGTCACGGGAGATGAGCTCGTTGGAGAAGGTGAGCCCAGGCATGAGGCC 40108 Query 130087 CCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACA 130146 ||||||||| | |||||| || | ||||| ||||| ||||||||||| ||||| || || Sbjct 40109 CCGCTTCTTGAGCCAGAAGATGGAGCAAAAGGAGCCGGAGAAGAAGATACCCTCGACGCA 40168 Query 130147 CGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGGGAC-TTTGTATCAAACCACTTCATCG 130205 || || || | || ||||| |||||||||| ||| || ||| ||| || | Sbjct 40169 GGCAAAGGCGACGATGCGCTCGGCAAAGGAGCTCGACGAGTGGATCCAAC----GCAGAG 40224 Query 130206 CCCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGC 130248 |||| | ||||| || ||| || |||||||| | |||||| Sbjct 40225 CCCAGTCGGCCTTCTTTCCGACGCAGGGGACGGTTTCGATCGC 40267 >seq2510 Length=43382 Score = 154 bits (170), Expect = 2e-32 Identities = 169/223 (76%), Gaps = 5/223 (2%) Strand=Plus/Minus Query 130027 GTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACC 130086 |||||| |||||||||||||||||||| || || |||||| || || |||||||| || Sbjct 21228 GTGGAGTCCCTCGTCACGGGAGATGAGCTCGTTGGAGAAGGTTAGCCCAGGCATGAGGCC 21169 Query 130087 CCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACA 130146 |||||||| | |||||| || | || || ||||| ||||||||||| ||||| || || Sbjct 21168 TCGCTTCTTGAGCCAGAAGATGGAGCAGAAGGAGCCGGAGAAGAAGATACCCTCGACGCA 21109 Query 130147 CGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGGGAC-TTTGTATCAAACCACTTCATCG 130205 || || || | || ||||| |||||||| | ||| || ||| ||| || || Sbjct 21108 GGCAAAGGCGACGATGCGCTCGGCAAAGGAACTCGACGAGTGGATCCAAC----GCAGCG 21053 Query 130206 CCCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGC 130248 |||||| ||||| || ||| || |||||||||| |||||| Sbjct 21052 CCCACTCGGCCTTCTTTCCGACGCAGGGGACGGTCTCGATCGC 21010 >seq2656 Length=42395 Score = 145 bits (160), Expect = 9e-30 Identities = 360/531 (68%), Gaps = 23/531 (4%) Strand=Plus/Plus Query 129728 TAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATT--CTCCA 129785 || || ||||||| ||||||||||||||| |||||||| | || || ||||| ||||| Sbjct 41381 TACTCGCCAACCCTCTTCTCGAAGAAGTTGGTCTTCCCCTGCA-GC-GATATGAGCTCCA 41438 Query 129786 TAAAATCAAATGGGTTCTTTGAGTTCCAAA----TTGCTGGCACTCCAATCTGTTTGAGG 129841 | | || || || || | | ||| | |||||| || || | | | || Sbjct 41439 TCCAGTCGAACGGATT--TGGGACGCCATAGATTTTGCTG-CAATCGAG-CGCTCCCAGC 41494 Query 129842 AGACGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCGGAGTTCATACCGATGAG- 129900 || ||||| | ||| |||| ||||| | | |||| ||| |||||| || | || Sbjct 41495 AGCCGATCGGCTACGAACTCGATGTATTGACTCATCAGCTCCCCGTTCATCCCTACAAGC 41554 Query 129901 GTTACATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGCACGAT 129960 | ||| || || ||||| ||| |||| || ||||||||| || || || ||||| Sbjct 41555 GCCACA-GGCAGAGCGTCGCAGACGAACTCCCGCTCAATGTCGACCGCCTCTTTGACGAT 41613 Query 129961 GGCGTGAATGGTCTC--CGTGCCAGGTCTA-TTGCGCAAAGTCTTGAAGAGTTCCACGGC 130017 || ||| |||| || || | | | ||| | | | | || || || ||| Sbjct 41614 GGATCTAATCCTCTCTTCGGGCAACTTGTTGTTGAGGAGGCTGTAGAGAAGG--CA-GGC 41670 Query 130018 AAACTCCTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGG 130077 || || |||||| |||||||| || |||||||| || || ||||| || || || Sbjct 41671 GAAGTCGCAGTGGAGGCCCTCGTCGCGAGAGATGAGCTCGTTGGAGAACGTGAGGCCAGG 41730 Query 130078 CATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCC 130137 |||||| || |||||||| | |||||| || || || || ||||| ||||||||||| || Sbjct 41731 CATGAGTCCGCGCTTCTTGAGCCAGAAGATTGCGCAGAAGGAGCCGGAGAAGAAGATGCC 41790 Query 130138 CTCCACACACGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGGGACTTTGTATCAAACCA 130197 || || || ||||| |||| ||| ||||| || |||| ||| | | | ||| Sbjct 41791 TTCGACGCAGGCGAAGGCAACGAGGCGCTCGGCGTAGGAATCCGAC---GAACGGATCCA 41847 Query 130198 CTTCATCGCCCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGC 130248 | |||||| | ||||| || ||| || |||||||||| |||||| Sbjct 41848 GCGGACCGCCCAGTCGGCCTTCTTGCCGACGCAGGGGACGGTCTCGATCGC 41898 >seq4514 Length=32024 Score = 138 bits (152), Expect = 1e-27 Identities = 225/319 (71%), Gaps = 4/319 (1%) Strand=Plus/Plus Query 14111 CGGTTCGTCGCCGCGATGACAACGATGCCCGTCTCGTTATCAAAGCCATCCATCTCAGTC 14170 ||||| || || || ||||||| ||| || || | |||||||||||||||||||| Sbjct 21808 CGGTTTGTAGCAGCAATGACAATGATACCAGTATTTCCTTCAAAGCCATCCATCTCAGTT 21867 Query 14171 AAGAGTTGATTGATGGTTTGTTCGCGTTCATCATTCGCAGGCATACCACCCGCACTGCGT 14230 ||||| || || | |||||||| | ||||||||| || | ||| | | | | Sbjct 21868 AAGAGCTGGTTAAGTGTTTGTTCCCTTTCATCATTTCCACCTCCAATACCTGTTCCTCTT 21927 Query 14231 TGCTTACCGACGGCGTCAATTTCATCGATGAAAACGATACATGGTTGATTTTCACGGGCA 14290 ||| | || || || ||||| ||||| | |||||| || |||||| |||||| ||| Sbjct 21928 TGCCTTCCAACAGCATCAATCTCATCAACGAAAACAATGCATGGTGCATTTTCTTTGGCC 21987 Query 14291 A-CTTCAAAGATATCTCGCACTCTCTTGGCACCGACACCCACAAACATCTCCACAAAATT 14349 ||| ||| | ||| || ||||| ||||| ||||| ||||||||||| ||||| | Sbjct 21988 TTCTTGAAA-AGATCACGAACTCTTGAAGCACCAACACCAACAAACATCTCTACAAACTC 22046 Query 14350 GGCGGCGGAACATTG-GATGAAGGGGACGTTAGATTCACCCGCGATGGCTCGGGCGAGGA 14408 || | ||| |||| || || || || || |||||| || || || || || | Sbjct 22047 GGAACCAGAA-ATTGAGAAAAATGGAACACCAGCTTCACCAGCAATTGCCTTAGCCAGCA 22105 Query 14409 GGGTCTTCCCCGTCCCTGG 14427 | |||||||| || ||||| Sbjct 22106 GTGTCTTCCCAGTGCCTGG 22124 >seq70 Length=129315 Score = 118 bits (130), Expect = 1e-21 Identities = 223/321 (69%), Gaps = 8/321 (2%) Strand=Plus/Plus Query 14111 CGGTTCGTCGCCGCGATGACAACGATGCCCGTCTCGTTATCAAAGCCATCCATCTCAGTC 14170 ||||| || || || || |||| || || || | |||||||||||||||||||| Sbjct 36480 CGGTTTGTAGCTGCAATAACAATGACACCAGTGTTTCCTTCAAAGCCATCCATCTCAGTT 36539 Query 14171 AAGAGTTGATTGATGGTTTGTTCGCGTTCATCATTCGCAGGCATACCA--CCCGCACTGC 14228 ||||| || || | |||||||| | |||||||| || | | | | || || | | Sbjct 36540 AAGAGCTGGTTAAGCGTTTGTTCTCTCTCATCATTTCCA--CCTCCAATTCCTGCTCCTC 36597 Query 14229 GTTGCTTACCGACGGCGTCAATTTCATCGATGAAAACGATACATGGTTGATTTTC-ACGG 14287 |||| | || || || ||||||||||| | |||||| || |||||| |||||| || Sbjct 36598 TTTGCCTTCCAACTGCATCAATTTCATCAACGAAAACAATGCATGGTGCATTTTCTTTGG 36657 Query 14288 GCAACTTCAAAGATATCTCGCACTCTCTTGGCACCGACACCCACAAACATCTCCACAAAA 14347 | ||| ||| | || || ||||| ||||| || || ||||||||||| ||||| Sbjct 36658 CCTTCTTGAAA-AGTTCACGAACTCTTGAAGCACCAACGCCGACAAACATCTCTACAAAC 36716 Query 14348 TTGGCGGCGGAACATTG-GATGAAGGGGACGTTAGATTCACCCGCGATGGCTCGGGCGAG 14406 | | | ||| |||| || || || || || |||||| ||||| || || || Sbjct 36717 TCAGAACCTGAA-ATTGAGAAAAATGGAACACCAGCTTCACCGGCGATTGCCTTAGCCAG 36775 Query 14407 GAGGGTCTTCCCCGTCCCTGG 14427 || |||||||| || || || Sbjct 36776 CAGTGTCTTCCCAGTACCCGG 36796 >seq4174 Length=33674 Score = 95.1 bits (104), Expect = 1e-14 Identities = 190/279 (68%), Gaps = 2/279 (1%) Strand=Plus/Plus Query 14150 TCAAAGCCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCGCGTTCATCATTCGCA 14209 ||||| ||||||||||| ||||| |||||||| | || ||||| | ||||||||| | Sbjct 23028 TCAAAACCATCCATCTCGGTCAAAAGTTGATTTAGAGTCTGTTCTCTTTCATCATTTCCT 23087 Query 14210 GGCATACCACCCGCACTGCGTTGCTTACCGACGGCGTCAATTTCATCGATGAAAACGATA 14269 | | || | | | ||| | || || || |||||||| || | ||||| ||| Sbjct 23088 CCCCCAATGCCTGTTCCTCTTTGTCTCCCAACAGCATCAATTTCGTCAACAAAAACAATA 23147 Query 14270 CATGGTTGATTTTCACGGGCAACTTCAAAGATATCTCGCACTCTCTTGGCACCGACACCC 14329 || ||| ||| || || || || | ||| || |||| ||||||||||| Sbjct 23148 CAAGGTGCATTCTCTTTTGCCTTTTTGAAAAGATCACGGACTCGTGAAGCACCGACACCA 23207 Query 14330 ACAAACATCTCCACAAAATTGGCGGCGGAACATTG-GATGAAGGGGACGTTAGATTCACC 14388 ||||||||||| ||||| | | | ||| || | || || ||||| || ||||| Sbjct 23208 ACAAACATCTCAACAAATTCTGATCCCGAA-ATAGAGAAAAATGGGACTCCAGCCTCACC 23266 Query 14389 CGCGATGGCTCGGGCGAGGAGGGTCTTCCCCGTCCCTGG 14427 || || ||| || || || ||||| || |||||||| Sbjct 23267 TGCAATAGCTTTAGCAAGAAGAGTCTTTCCAGTCCCTGG 23305 >seq3117 Length=39173 Score = 82.4 bits (90), Expect = 9e-11 Identities = 71/88 (81%), Gaps = 0/88 (0%) Strand=Plus/Plus Query 118181 ATAGATATTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGA 118240 ||| || |||| ||||||||||||||||||||||||||| |||| ||||| || || Sbjct 12417 ATAAATGTTGGACGTGTATGGCTCAAAGCACTCATTGTTTCCCAGTATTTGACTAGTTGA 12476 Query 118241 GGCTGTGGGCATGGGTGCCATGAGAAGG 118268 || |||||||| || || || |||||| Sbjct 12477 AGCAGTGGGCATAGGAGCAATAAGAAGG 12504 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618123771494160