Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eichhornia_20paniculata_20[genbank_20GCA_5F001647135.1_202016-05-02] 40,286 sequences; 571,388,321 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq2510 176 5e-39 seq7765 174 2e-38 seq32078 170 2e-37 seq4514 145 9e-30 seq4174 143 3e-29 seq2656 143 3e-29 seq70 122 1e-22 seq4518 87.8 2e-12 seq992 87.8 2e-12 >seq2510 Length=43382 Score = 176 bits (194), Expect = 5e-39 Identities = 133/157 (85%), Gaps = 0/157 (0%) Strand=Plus/Plus Query 94788 GTCGCGTTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTC 94847 |||| |||||||||| ||||| || |||| ||||| || || ||||||||||||||||| Sbjct 21072 GTCGAGTTCCTTTGCCGAGCGCATCGTCGCCTTTGCCTGCGTCGAGGGTATCTTCTTCTC 21131 Query 94848 TGGTTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTT 94907 || ||||||||| | || | ||||||||||||||||| |||||||| || || ||| Sbjct 21132 CGGCTCCTTCTGCTCCATCTTCTGGCTCAAGAAGCGAGGCCTCATGCCTGGGCTAACCTT 21191 Query 94908 CTCCAACGAGCTTATCTCTCGTGACGAGGGACTCCAC 94944 |||||||||||| ||||| |||||||||||||||||| Sbjct 21192 CTCCAACGAGCTCATCTCCCGTGACGAGGGACTCCAC 21228 >seq7765 Length=42474 Score = 174 bits (192), Expect = 2e-38 Identities = 186/244 (76%), Gaps = 5/244 (2%) Strand=Plus/Minus Query 94702 GAGAAGAAGCAGCTCTTTGAAGCCATCCAAACAGTTCCGTGTATTCAAAAGAAAGCGGAT 94761 |||||| || ||||| || ||| |||| || || || | |||||| || || Sbjct 40288 GAGAAGTCGCGCCTCTTCCGCGCGATCGAAACCGTCCCCTGCGTCGGAAAGAAGGCCGAC 40229 Query 94762 TGGGCTATGAAGTGGTTTGATACAAA-GTCGCGTTCCTTTGCTGAGCGACTCTTCGCATT 94820 |||||| || ||| ||| || |||| | |||||||| ||||| || |||| || Sbjct 40228 TGGGCTCTGC----GTTGGATCCACTCGTCGAGCTCCTTTGCCGAGCGCATCGTCGCCTT 40173 Query 94821 TGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCTATTTATTGGCTCAAGAA 94880 ||| || || ||||||||||||||||| || ||||| ||| | || | ||||||||||| Sbjct 40172 TGCCTGCGTCGAGGGTATCTTCTTCTCCGGCTCCTTTTGCTCCATCTTCTGGCTCAAGAA 40113 Query 94881 GCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCTCGTGACGAGGGACT 94940 ||| || |||||||| || ||| ||||||||||||||| ||||| |||||||||||||| Sbjct 40112 GCGGGGCCTCATGCCTGGGCTCACCTTCTCCAACGAGCTCATCTCCCGTGACGAGGGACT 40053 Query 94941 CCAC 94944 |||| Sbjct 40052 CCAC 40049 >seq32078 Length=1569 Score = 170 bits (188), Expect = 2e-37 Identities = 185/244 (76%), Gaps = 5/244 (2%) Strand=Plus/Plus Query 94702 GAGAAGAAGCAGCTCTTTGAAGCCATCCAAACAGTTCCGTGTATTCAAAAGAAAGCGGAT 94761 |||||| || ||||| || ||| |||| || || || | |||||| || || Sbjct 895 GAGAAGTCGCGCCTCTTCCGCGCGATCGAAACCGTCCCCTGCGTCGGAAAGAAGGCCGAC 954 Query 94762 TGGGCTATGAAGTGGTTTGATACAAA-GTCGCGTTCCTTTGCTGAGCGACTCTTCGCATT 94820 |||||| || ||| ||| || |||| | |||||||| ||||| || |||| || Sbjct 955 TGGGCTCTGC----GTTGGATCCACTCGTCGAGCTCCTTTGCCGAGCGCATCGTCGCCTT 1010 Query 94821 TGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCTATTTATTGGCTCAAGAA 94880 ||| || || ||||||||||||||||| || ||||| ||| | || | ||||||||||| Sbjct 1011 TGCCTGCGTCGAGGGTATCTTCTTCTCCGGCTCCTTTTGCTCCATCTTCTGGCTCAAGAA 1070 Query 94881 GCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCTCGTGACGAGGGACT 94940 ||| || |||||||| || ||| ||||||||||||||| ||||| ||||||||||| || Sbjct 1071 GCGGGGCCTCATGCCTGGGCTCACCTTCTCCAACGAGCTCATCTCCCGTGACGAGGGTCT 1130 Query 94941 CCAC 94944 |||| Sbjct 1131 CCAC 1134 >seq4514 Length=32024 Score = 145 bits (160), Expect = 9e-30 Identities = 282/407 (69%), Gaps = 12/407 (3%) Strand=Plus/Plus Query 9572 CGATTCGTCGCGGCGATGACAACAATACCTGT--TTCATTATCAAAACCATCCATCTCTG 9629 || || || || || ||||||| ||||| || ||| || |||| ||||||||||| | Sbjct 21808 CGGTTTGTAGCAGCAATGACAATGATACCAGTATTTCCTT--CAAAGCCATCCATCTCAG 21865 Query 9630 TCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCATACCACCAGCACTGC 9689 | || || ||||||| |||||||||| ||||||||| | | ||| | | | Sbjct 21866 TTAAGAGCTGGTTAAGTGTTTGTTCCCTTTCATCATTTCCACCTCCAATACCTGTTCCTC 21925 Query 9690 GTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTC-GCGA 9748 |||| |||| || |||||||||||||||| ||| || ||||||||| |||||| | Sbjct 21926 TTTGCCTTCCAACAGCATCAATCTCATCAACGAAAACAATGCATGGTGCATTTTCTTTGG 21985 Query 9749 GCGACTTCAAAGAGATCCCGTACACGCTTG--GCGCCCACACCAACAAACATCTCCACAA 9806 | ||| ||| ||||| || || |||| || || ||||||||||||||||| |||| Sbjct 21986 CCTTCTTGAAA-AGATCACG--AACTCTTGAAGCACCAACACCAACAAACATCTCTACAA 22042 Query 9807 AGTTTGCGGCGGAACATTG-GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCG 9865 | | | | ||| |||| || || || ||| || |||||| ||||| || || Sbjct 22043 ACTCGGAACCAGAA-ATTGAGAAAAATGGAACACCAGCTTCACCAGCAATTGCCTTAGCC 22101 Query 9866 AGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCTCGTGGAATCTTGGCG 9925 || || ||||| || || ||||| ||| | || || ||||| ||||| || Sbjct 22102 AGCAGTGTCTTCCCAGTGCCTGGGGGACCGACAAGTAGAACACCTTTAGGAATTCGTGCA 22161 Query 9926 CCACTTCCAAAGTATCTCTCAGGTTGCTTAAGAAAATCCACAATTTC 9972 || | | | ||||| |||| ||| ||||| ||||| | ||| Sbjct 22162 CCGACAGCGGTGAACCTCTCTGGTTTCTTTAGAAATTCCACCACTTC 22208 >seq4174 Length=33674 Score = 143 bits (158), Expect = 3e-29 Identities = 269/393 (68%), Gaps = 2/393 (1%) Strand=Plus/Plus Query 9527 TCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGCGGCG 9586 ||||| || || || | ||| || || ||| | ||||| | ||||| || || || Sbjct 22944 TCAAAACGTCCAGGCCTAAGAAGAGCAGAATCCAATATATCTGCACGATTGGTGGCTGCA 23003 Query 9587 ATGACAACAATACCTGTTTCATTATCAAAACCATCCATCTCTGTCAAAAGTTGGTTAATA 9646 || |||| ||||| || | | ||||||||||||||||| ||||||||||| || | | Sbjct 23004 ATTACAATTATACCAGTATTACCCTCAAAACCATCCATCTCGGTCAAAAGTTGATTTAGA 23063 Query 9647 GTTTGTTCCCGTTCATCATTCGCTGGCATACCACCAGCACTGCGTTGCTTTCCCACGGCA 9706 || ||||| | ||||||||| || | | || | | | ||| | || || ||| Sbjct 23064 GTCTGTTCTCTTTCATCATTTCCTCCCCCAATGCCTGTTCCTCTTTGTCTCCCAACAGCA 23123 Query 9707 TCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGCGACTTCAAAGAGATCC 9766 ||||| || |||| || || || || ||| ||| || || || || ||||| Sbjct 23124 TCAATTTCGTCAACAAAAACAATACAAGGTGCATTCTCTTTTGCCTTTTTGAAAAGATCA 23183 Query 9767 CGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGAACATTG- 9825 || || || || || ||||||||||||||||| ||||| | || | ||| || | Sbjct 23184 CGGACTCGTGAAGCACCGACACCAACAAACATCTCAACAAATTCTGATCCCGAA-ATAGA 23242 Query 9826 GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACC 9885 || || ||||| || ||||| ||||| ||| || ||||||||||| || || || Sbjct 23243 GAAAAATGGGACTCCAGCCTCACCTGCAATAGCTTTAGCAAGAAGAGTCTTTCCAGTCCC 23302 Query 9886 TGGCTTACCCGCGAGGAGGGCACCTCGTGGAAT 9918 ||| ||| | ||||| ||||| ||||| Sbjct 23303 TGGAGGACCAACAAGGAGAACACCTTTAGGAAT 23335 >seq2656 Length=42395 Score = 143 bits (158), Expect = 3e-29 Identities = 126/157 (80%), Gaps = 0/157 (0%) Strand=Plus/Minus Query 94788 GTCGCGTTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTC 94847 |||| ||||| || ||||| ||| | || || || || || || || ||||||||||| Sbjct 41836 GTCGGATTCCTACGCCGAGCGCCTCGTTGCCTTCGCCTGCGTCGAAGGCATCTTCTTCTC 41777 Query 94848 TGGTTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTT 94907 || ||||||||||| || | |||||||||||||| || |||||||| || ||| || Sbjct 41776 CGGCTCCTTCTGCGCAATCTTCTGGCTCAAGAAGCGCGGACTCATGCCTGGCCTCACGTT 41717 Query 94908 CTCCAACGAGCTTATCTCTCGTGACGAGGGACTCCAC 94944 |||||||||||| |||||||| |||||||| |||||| Sbjct 41716 CTCCAACGAGCTCATCTCTCGCGACGAGGGCCTCCAC 41680 >seq70 Length=129315 Score = 122 bits (134), Expect = 1e-22 Identities = 279/409 (68%), Gaps = 16/409 (4%) Strand=Plus/Plus Query 9572 CGATTCGTCGCGGCGATGACAACAATACC--TGTTTCATTATCAAAACCATCCATCTCTG 9629 || || || || || || |||| | ||| |||||| || |||| ||||||||||| | Sbjct 36480 CGGTTTGTAGCTGCAATAACAATGACACCAGTGTTTCCTT--CAAAGCCATCCATCTCAG 36537 Query 9630 TCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCATACCA--CCAGCACT 9687 | || || ||||||| |||||||| | |||||||| | | | | | || || | Sbjct 36538 TTAAGAGCTGGTTAAGCGTTTGTTCTCTCTCATCATTTCC--ACCTCCAATTCCTGCTCC 36595 Query 9688 GCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTC-GC 9746 | |||| |||| || |||||||| ||||||| ||| || ||||||||| |||||| Sbjct 36596 TCTTTGCCTTCCAACTGCATCAATTTCATCAACGAAAACAATGCATGGTGCATTTTCTTT 36655 Query 9747 GAGCGACTTCAAAGAGATCCCGTACACGCTTG--GCGCCCACACCAACAAACATCTCCAC 9804 | | ||| ||| || || || || |||| || || || || ||||||||||| || Sbjct 36656 GGCCTTCTTGAAA-AGTTCACG--AACTCTTGAAGCACCAACGCCGACAAACATCTCTAC 36712 Query 9805 AAAGTTTGCGGCGGAACATTG-GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGG 9863 ||| | | | ||| |||| || || || ||| || |||||| || || || | Sbjct 36713 AAACTCAGAACCTGAA-ATTGAGAAAAATGGAACACCAGCTTCACCGGCGATTGCCTTAG 36771 Query 9864 CGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCTCGTGGAATCTTGG 9923 | || || ||||| || ||||| || ||| | || || ||||| ||||| | Sbjct 36772 CCAGCAGTGTCTTCCCAGTACCCGGAGGACCAACAAGAAGAACACCTTTAGGAATTCGTG 36831 Query 9924 CGCCACTTCCAAAGTATCTCTCAGGTTGCTTAAGAAAATCCACAATTTC 9972 | || | || | | ||||| |||| ||| ||||| || |||| ||| Sbjct 36832 CACCGACTGCAGTGAACCTCTCTGGTTTCTTCAGAAATTCTACAACTTC 36880 >seq4518 Length=32015 Score = 87.8 bits (96), Expect = 2e-12 Identities = 218/323 (67%), Gaps = 11/323 (3%) Strand=Plus/Plus Query 9612 CAAAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGC-- 9669 ||||||||||||||||| | | || || | ||| ||| ||||||||||| || Sbjct 19086 CAAAACCATCCATCTCTACAAGCAACTGATTTAGAGTGCTTTCACGTTCATCATTTGCAC 19145 Query 9670 -TGGCATACCACCAGCACTGCGTTGCTTTCCCACG-GCATCAATCTCATCAATGAAGACG 9727 || | ||| ||| | | ||||| ||| |||||||| |||||||| || | Sbjct 19146 CTGAGAAACCTCCACGGCCTC-TTGCTCGACCAATCGCATCAATTTCATCAATAAATATT 19204 Query 9728 ATGCATGGTTGATTTTCGCGAGCGACTTCAAAGAGATCCCGTACACGCTTGGCG--CCCA 9785 || | ||| | | | ||| ||| ||| | || |||||| | ||| | || | Sbjct 19205 ATACTGGGTGCACACTGCCTAGCTTCTTGAAACAAATTCCGTACTC--TTGCTGGTCCAA 19262 Query 9786 CACCAACAAACATCTCCACAAAGTTTGCGGCGGAACATTGG-ATGAAGGGGACATTAGAT 9844 ||||||||||||| |||| ||| | | |||| |||| | ||||| |||| ||| Sbjct 19263 CACCAACAAACATTTCCAGAAAATCCGAACCGGAT-ATTGACAAAAAGGGCACATCAGAC 19321 Query 9845 TCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGG 9904 ||||| ||| | ||| | ||||||||||| |||||||| || || | || ||| Sbjct 19322 TCACCTGCAGTTGCTTTAGAAAGAAGAGTCTTTCCCGTACCAGGAGGTCCAACAAGAAGG 19381 Query 9905 GCACCTCGTGGAATCTTGGCGCC 9927 |||||| ||||| || || || Sbjct 19382 GCACCTTTAGGAATTTTAGCTCC 19404 >seq992 Length=120957 Score = 87.8 bits (96), Expect = 2e-12 Identities = 238/358 (66%), Gaps = 10/358 (3%) Strand=Plus/Minus Query 9614 AAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGC 9673 || ||||||||||||||||| || || || || || || || | || || || | | Sbjct 3160 AACCCATCCATCTCTGTCAATAGCTGATTGATTGTCTGCTCTCTCTCGTCGTTTCCA--C 3103 Query 9674 ATACCA--CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATGC 9731 | | | || |||| || ||| ||||||| |||||||| ||||| ||||| || |||| Sbjct 3102 CTCCAAGCCCGGCACCACGCTGCCTTCCCACAGCATCAATTTCATCTATGAACACAATGC 3043 Query 9732 ATGGTTGATTTTCGCGAGCGACTTCA--AAGAGATCCCGTACACGCTTGGCGCCCACACC 9789 | || | |||| || |||| || | ||||| || | | ||| ||||| || Sbjct 3042 AGGG--GGCCTTCGATTTCGCCTTCTCGAACAAGTCCCGGACTCTCGAGGCACCCACTCC 2985 Query 9790 AACAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGATTCACC 9849 ||||||| || || || | | || | |||| || |||||| || | || || Sbjct 2984 CACAAACAATTCAACGAACTCGGATGCCGCACATGAGAAGAAGGGCACGCCGGCCTCCCC 2925 Query 9850 CGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACC 9909 || | || | ||| || ||||||||||| || || ||| || | | || |||| | Sbjct 2924 GGCCACTGCCCTGGCCAGCAGAGTCTTACCAGTTCCGGGCGGCCCGACCAAGA-GGCAGC 2866 Query 9910 TCGT-GGAATCTTGGCGCCACTTCCAAAGTATCTCTCAGGTTGCTTAAGAAAATCCAC 9966 | | || ||||| || || | | ||| | ||||| | ||| || |||||||| Sbjct 2865 CCTTGGGGATCTTTGCTCCGAGTGCGGTGTACTTGTCAGGGTTCTTGAGGAAATCCAC 2808 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 582967084442640