Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eichhornia_20paniculata_20[genbank_20GCA_5F001647135.1_202016-05-02] 40,286 sequences; 571,388,321 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq2510 206 3e-48 seq32078 194 2e-44 seq7765 194 2e-44 seq2656 176 5e-39 >seq2510 Length=43382 Score = 206 bits (228), Expect = 3e-48 Identities = 577/867 (67%), Gaps = 39/867 (4%) Strand=Plus/Plus Query 59573 GTACCCGGATCTGTGGGCCCTGTATAAGAAAGCGATCGGTTCATTCTGGTCCGTCGAGGA 59632 |||||||| | |||| | || ||||| ||| | | || |||||| ||| ||||| Sbjct 20679 GTACCCGGCGGTCTGGGAGTTCTACAAGAAGGCGGTTGCCTCCTTCTGGACCGCGGAGGA 20738 Query 59633 GATTGACCTCGCCGGAGACCTGAAGGATTGGGACAAGC---TCAATTACGACGAGCAGCA 59689 | | |||||| ||| || || | ||| |||| | |||| |||||||| | Sbjct 20739 GGTCGACCTCTCCGCTGATCTCGTCCACTGGAACAACCGCCTCAACGCCGACGAGCGCCG 20798 Query 59690 TTTCATCAAGATGGTCCTGGCCTTCTTCGCGGCGAGTGATGGAATTGTGATGGAAAATAT 59749 ||| || ||||| ||||||||||| ||| || || || || | || || | Sbjct 20799 CTTCGTCTCCCACGTCCTCGCCTTCTTCGCCGCGTCCGACGGCATCGTCCTCGAGAACCT 20858 Query 59750 AGACATGAACTTT---TCCAAGGATGTCCAGATTGCCGAGGCCCGGTCGTTCTACGCGTA 59806 | | ||| ||| || || || | |||||||||| | ||||||| | Sbjct 20859 CGCCGGCCGCTTCATGTCC---GACGTGCAAGTCCCCGAGGCCCGCGCCTTCTACGGCTT 20915 Query 59807 TCAG-TCGTTCAACGAGTCTATCCACTCCGAGACGTACTCGCTCATGATCGATAAGTTGG 59865 ||| ||| || |||| ||||||||||||| |||||| ||| | |||| | | Sbjct 20916 CCAGATCGC-CATCGAGAACATCCACTCCGAGATGTACTCCCTCCTCCTCGAGACCTACA 20974 Query 59866 TCAAGGATCCGGAAGAGAAGGCTGGTCTGTTCCGTGCCATAGAGAC-GTCCCCCGCAGTT 59924 ||||||| | || |||||| | | || ||||| || || ||||| |||||| || || Sbjct 20975 TCAAGGACTCCGAGGAGAAGTCGCGCCTCTTCCGCGCGATCGAGACCGTCCCCTGC-GTC 21033 Query 59925 AAACAAAAAGCAGAATGGGCCATGCAGTGGATG-AGTCCTGGAGCATCATTTGCACAACG 59983 | | || || || ||||| ||| ||||| | || | ||| || ||||| | || Sbjct 21034 GGAAAGAAGGCCGAGTGGGCGCTGCGTTGGATCCACTCGTCGAGT-TCCTTTGCCGAGCG 21092 Query 59984 TCTCATAGCTTTTGCATGCGTGGAAGGAATCTTCTTCTCTGGCTCGTTCTGTGCTATTTT 60043 || | || ||||| ||||| || || ||||||||||| ||||| ||||| | || || Sbjct 21093 CATCGTCGCCTTTGCCTGCGTCGAGGGTATCTTCTTCTCCGGCTCCTTCTGCTCCATCTT 21152 Query 60044 CTGGCTCAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAACGAGCTGATTTCCCG 60103 ||||||||| ||||| ||||||||||| || || | |||||||||||||| || ||||| Sbjct 21153 CTGGCTCAAGAAGCGAGGCCTCATGCCTGGGCTAACCTTCTCCAACGAGCTCATCTCCCG 21212 Query 60104 GGACGAGGGCCTCCATCAGGAGTTTGCAGTGACGCTCTATTCACACCTATTGGA----AA 60159 |||||||| ||||| || || || || | | || | || ||| || | || Sbjct 21213 TGACGAGGGACTCCACTGCGACTTCGC-CTGCCTC-CTCTACA-GCCTCCTGAACAACAA 21269 Query 60160 AATGCCCTTCCAAGGATATTCACAAG---ATTGTTCAGTGGGCTTGTGAAGTGGAGAGCG 60216 | ||| || |||| | ||| || || | || || | || | | Sbjct 21270 ATTGC----CCGAGGAAAAAGTGAAGTCTATCGTGGAAGACGCCGTCGATATCGAACGGG 21325 Query 60217 AGTTCATCACAGAAGCGCTTCCA--TGCAAACTCATAGGTATGGACGCTGGAGAAATGAC 60274 | ||| | || ||| | ||| ||| ||| | |||||| ||| | |||| Sbjct 21326 AATTCGTGTGTGACGCGTTGCCAGTTGC--ACTGGTGGGTATGAACGGGGTTCTGATGAG 21383 Query 60275 GCAGTACATTCAGTTTGTCGCGGACCG---CCTCATGGCCCAGTTTGGAGAAGGACCAAT 60331 ||||||||| | || ||||||||||| | ||||| | |||| | | || Sbjct 21384 TCAGTACATTGAATTCGTCGCGGACCGGTTGATGATGGCTC---TTGGCTACAGCAAGAT 21440 Query 60332 TTACGGCGTGAATAACCCTTTCGACTGGATGGAGACCATCTCGTTGGAAGGGAAGACCAA 60391 ||| ||||| | || ||||| |||||||||||| |||||||||| | ||||| || || Sbjct 21441 TTATGGCGTCACGAATCCTTTTGACTGGATGGAGCTCATCTCGTTGCAGGGGAAAACTAA 21500 Query 60392 CTTCTTTGAGAAGCGGGTCGGGGATTA 60418 ||||||||||| | ||||| ||||| Sbjct 21501 TTTCTTTGAGAAAAGAGTCGGCGATTA 21527 Score = 114 bits (126), Expect = 1e-20 Identities = 312/468 (67%), Gaps = 15/468 (3%) Strand=Plus/Plus Query 59573 GTACCCGGATCTGTGGGCCCTGTATAAGAAAGCGATCGGTTCATTCTGGTCCGTCGAGGA 59632 |||||||| | |||| | |||||||| ||| | | || |||||| ||| ||||| Sbjct 19930 GTACCCGGCGGTCTGGGAGTTCTATAAGAAGGCGGTTGCCTCCTTCTGGACCGCGGAGGA 19989 Query 59633 GATTGACCTCGCCGGAGACCTGAAGGATTGGGACAAGC---TCAATTACGACGAGCAGCA 59689 | | |||||| ||| || || | ||| |||| | |||| |||||||| | Sbjct 19990 GGTCGACCTCTCCGCCGATCTCGCCCACTGGAACAACCGCCTCAACGCCGACGAGCGCCG 20049 Query 59690 TTTCATCAAGATGGTCCTGGCCTTCTTCGCGGCGAGTGATGGAATTGTGATGGAAAATAT 59749 ||| || ||||| ||||||||||| ||| || || || || | || || | Sbjct 20050 CTTCGTCTCCCACGTCCTCGCCTTCTTCGCCGCGTCCGACGGCATCGTCCTCGAGAACCT 20109 Query 59750 AGACATGAACTTT---TCCAAGGATGTCCAGATTGCCGAGGCCCGGTCGTTCTACGCGTA 59806 | | ||| ||| || || || | |||||||||| | ||||||| | Sbjct 20110 CGCCGGCCGCTTCATGTCC---GACGTGCAAGTCCCCGAGGCCCGCGCCTTCTACGGCTT 20166 Query 59807 TCAG-TCGTTCAACGAGTCTATCCACTCCGAGACGTACTCGCTCATGATCGATAAGTTGG 59865 ||| ||| || |||| ||||||||||||| |||||| ||| | |||| | | Sbjct 20167 CCAGATCGC-CATCGAGAACATCCACTCCGAGATGTACTCCCTCCTCCTCGAGACCTACA 20225 Query 59866 TCAAGGATCCGGAAGAGAAGGCTGGTCTGTTCCGTGCCATAGAGA-CGTCCCCCGCAGTT 59924 ||||||| | || |||||| | | || ||||| || || || | ||||||| || || Sbjct 20226 TCAAGGACTCCGAGGAGAAGTCGCGCCTCTTCCGCGCGATCGAAACCGTCCCCTGC-GTC 20284 Query 59925 AAACAAAAAGCAGAATGGGCCATGCAGTGGAT-GAGTCCTGGAGCATCATTTGCACAACG 59983 | | || || || ||||| ||| ||||| | || | |||| || ||||| | || Sbjct 20285 GGAAAGAAGGCCGACTGGGCTCTGCGTTGGATCCACTCGTCGAGC-TCCTTTGCCGAGCG 20343 Query 59984 TCTCATAGCTTTTGCATGCGTGGAAGGAATCTTCTTCTCTGGCTCGTT 60031 || | || ||||| ||||| || || ||||||||||| ||||| || Sbjct 20344 CATCGTCGCCTTTGCCTGCGTCGAGGGTATCTTCTTCTCCGGCTCCTT 20391 >seq32078 Length=1569 Score = 194 bits (214), Expect = 2e-44 Identities = 382/555 (69%), Gaps = 15/555 (3%) Strand=Plus/Plus Query 59573 GTACCCGGATCTGTGGGCCCTGTATAAGAAAGCGATCGGTTCATTCTGGTCCGTCGAGGA 59632 |||||||| | |||| | || ||||| ||| | | || |||||| ||| ||||| Sbjct 585 GTACCCGGCGGTCTGGGAGTTCTACAAGAAGGCGGTTGCCTCCTTCTGGACCGCGGAGGA 644 Query 59633 GATTGACCTCGCCGGAGACCTGAAGGATTGGGACAAGC---TCAATTACGACGAGCAGCA 59689 | | |||||| ||| || || | ||| |||| | |||| |||||||| | Sbjct 645 GGTCGACCTCTCCGCTGATCTCGTCCACTGGAACAACCGCCTCAACGCCGACGAGCGCCG 704 Query 59690 TTTCATCAAGATGGTCCTGGCCTTCTTCGCGGCGAGTGATGGAATTGTGATGGAAAATAT 59749 ||| || ||||| ||||||||||| ||| || || || || | || || | Sbjct 705 CTTCGTCTCCCACGTCCTCGCCTTCTTCGCCGCGTCCGACGGCATCGTCCTCGAGAACCT 764 Query 59750 AGACATGAACTTT---TCCAAGGATGTCCAGATTGCCGAGGCCCGGTCGTTCTACGCGTA 59806 | | ||| ||| || || || | |||||||||| | ||||||| | Sbjct 765 CGCCGGCCGCTTCATGTCC---GACGTGCAAGTCCCCGAGGCCCGCGCCTTCTACGGCTT 821 Query 59807 TCAG-TCGTTCAACGAGTCTATCCACTCCGAGACGTACTCGCTCATGATCGATAAGTTGG 59865 ||| ||| || |||| ||||||||||||| |||||| ||| | |||| | | Sbjct 822 CCAGATCGC-CATCGAGAACATCCACTCCGAGATGTACTCCCTCCTCCTCGAGACCTACA 880 Query 59866 TCAAGGATCCGGAAGAGAAGGCTGGTCTGTTCCGTGCCATAGAGAC-GTCCCCCGCAGTT 59924 ||||||| | || |||||| | | || ||||| || || || || |||||| || || Sbjct 881 TCAAGGACTCCGAGGAGAAGTCGCGCCTCTTCCGCGCGATCGAAACCGTCCCCTGC-GTC 939 Query 59925 AAACAAAAAGCAGAATGGGCCATGCAGTGGATG-AGTCCTGGAGCATCATTTGCACAACG 59983 | | || || || ||||| ||| ||||| | || | |||| || ||||| | || Sbjct 940 GGAAAGAAGGCCGACTGGGCTCTGCGTTGGATCCACTCGTCGAGC-TCCTTTGCCGAGCG 998 Query 59984 TCTCATAGCTTTTGCATGCGTGGAAGGAATCTTCTTCTCTGGCTCGTTCTGTGCTATTTT 60043 || | || ||||| ||||| || || ||||||||||| ||||| || || | || || Sbjct 999 CATCGTCGCCTTTGCCTGCGTCGAGGGTATCTTCTTCTCCGGCTCCTTTTGCTCCATCTT 1058 Query 60044 CTGGCTCAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAACGAGCTGATTTCCCG 60103 ||||||||| ||||| ||||||||||| || || | |||||||||||||| || ||||| Sbjct 1059 CTGGCTCAAGAAGCGGGGCCTCATGCCTGGGCTCACCTTCTCCAACGAGCTCATCTCCCG 1118 Query 60104 GGACGAGGGCCTCCA 60118 |||||||| ||||| Sbjct 1119 TGACGAGGGTCTCCA 1133 Score = 84.2 bits (92), Expect = 2e-11 Identities = 72/89 (81%), Gaps = 0/89 (0%) Strand=Plus/Plus Query 60330 ATTTACGGCGTGAATAACCCTTTCGACTGGATGGAGACCATCTCGTTGGAAGGGAAGACC 60389 ||||| ||||| | || ||||| |||||||||||| |||||||||| | ||||| || Sbjct 1345 ATTTATGGCGTCACGAATCCTTTTGACTGGATGGAGCTCATCTCGTTGCAGGGGAAAACT 1404 Query 60390 AACTTCTTTGAGAAGCGGGTCGGGGATTA 60418 || ||||||||||| | ||||| ||||| Sbjct 1405 AATTTCTTTGAGAAAAGAGTCGGCGATTA 1433 >seq7765 Length=42474 Score = 194 bits (214), Expect = 2e-44 Identities = 382/555 (69%), Gaps = 15/555 (3%) Strand=Plus/Minus Query 59573 GTACCCGGATCTGTGGGCCCTGTATAAGAAAGCGATCGGTTCATTCTGGTCCGTCGAGGA 59632 |||||||| | |||| | || ||||| ||| | | || |||||| ||| ||||| Sbjct 40598 GTACCCGGCGGTCTGGGAGTTCTACAAGAAGGCGGTTGCCTCCTTCTGGACCGCGGAGGA 40539 Query 59633 GATTGACCTCGCCGGAGACCTGAAGGATTGGGACAAGC---TCAATTACGACGAGCAGCA 59689 | | |||||| ||| || || | ||| |||| | |||| |||||||| | Sbjct 40538 GGTCGACCTCTCCGCTGATCTCGTCCACTGGAACAACCGCCTCAACGCCGACGAGCGCCG 40479 Query 59690 TTTCATCAAGATGGTCCTGGCCTTCTTCGCGGCGAGTGATGGAATTGTGATGGAAAATAT 59749 ||| || ||||| ||||||||||| ||| || || || || | || || | Sbjct 40478 CTTCGTCTCCCACGTCCTCGCCTTCTTCGCCGCGTCCGACGGCATCGTCCTCGAGAACCT 40419 Query 59750 AGACATGAACTTT---TCCAAGGATGTCCAGATTGCCGAGGCCCGGTCGTTCTACGCGTA 59806 | | ||| ||| || || || | |||||||||| | ||||||| | Sbjct 40418 CGCCGGCCGCTTCATGTCC---GACGTGCAAGTCCCCGAGGCCCGCGCCTTCTACGGCTT 40362 Query 59807 TCAG-TCGTTCAACGAGTCTATCCACTCCGAGACGTACTCGCTCATGATCGATAAGTTGG 59865 ||| ||| || |||| ||||||||||||| |||||| ||| | |||| | | Sbjct 40361 CCAGATCGC-CATCGAGAACATCCACTCCGAGATGTACTCCCTCCTCCTCGAGACCTACA 40303 Query 59866 TCAAGGATCCGGAAGAGAAGGCTGGTCTGTTCCGTGCCATAGAGAC-GTCCCCCGCAGTT 59924 ||||||| | || |||||| | | || ||||| || || || || |||||| || || Sbjct 40302 TCAAGGACTCCGAGGAGAAGTCGCGCCTCTTCCGCGCGATCGAAACCGTCCCCTGC-GTC 40244 Query 59925 AAACAAAAAGCAGAATGGGCCATGCAGTGGATG-AGTCCTGGAGCATCATTTGCACAACG 59983 | | || || || ||||| ||| ||||| | || | |||| || ||||| | || Sbjct 40243 GGAAAGAAGGCCGACTGGGCTCTGCGTTGGATCCACTCGTCGAGC-TCCTTTGCCGAGCG 40185 Query 59984 TCTCATAGCTTTTGCATGCGTGGAAGGAATCTTCTTCTCTGGCTCGTTCTGTGCTATTTT 60043 || | || ||||| ||||| || || ||||||||||| ||||| || || | || || Sbjct 40184 CATCGTCGCCTTTGCCTGCGTCGAGGGTATCTTCTTCTCCGGCTCCTTTTGCTCCATCTT 40125 Query 60044 CTGGCTCAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAACGAGCTGATTTCCCG 60103 ||||||||| ||||| ||||||||||| || || | |||||||||||||| || ||||| Sbjct 40124 CTGGCTCAAGAAGCGGGGCCTCATGCCTGGGCTCACCTTCTCCAACGAGCTCATCTCCCG 40065 Query 60104 GGACGAGGGCCTCCA 60118 |||||||| ||||| Sbjct 40064 TGACGAGGGACTCCA 40050 Score = 84.2 bits (92), Expect = 2e-11 Identities = 72/89 (81%), Gaps = 0/89 (0%) Strand=Plus/Minus Query 60330 ATTTACGGCGTGAATAACCCTTTCGACTGGATGGAGACCATCTCGTTGGAAGGGAAGACC 60389 ||||| ||||| | || ||||| |||||||||||| |||||||||| | ||||| || Sbjct 39838 ATTTATGGCGTCACGAATCCTTTTGACTGGATGGAGCTCATCTCGTTGCAGGGGAAAACT 39779 Query 60390 AACTTCTTTGAGAAGCGGGTCGGGGATTA 60418 || ||||||||||| | ||||| ||||| Sbjct 39778 AATTTCTTTGAGAAAAGAGTCGGCGATTA 39750 >seq2656 Length=42395 Score = 176 bits (194), Expect = 5e-39 Identities = 253/354 (71%), Gaps = 2/354 (1%) Strand=Plus/Minus Query 59766 AAGGATGTCCAGATTGCCGAGGCCCGGTCGTTCTACGCGTATCAGTCGTTCAACGAGTCT 59825 || || || ||| | | ||||| || | ||||||| || ||| || |||| Sbjct 42033 AACGACGTGCAGCTCCCGGAGGCGCGCGCCTTCTACGGGTTCCAGATTGCCATCGAGAAC 41974 Query 59826 ATCCACTCCGAGACGTACTCGCTCATGATCGATAAGTTGGTCAAGGATCCGGAAGAGAAG 59885 ||||||||||||| |||||| ||| | |||| | ||||||| ||||| |||||| Sbjct 41973 ATCCACTCCGAGATGTACTCCCTCCTCCTCGAGTCTTATATCAAGGACCCGGACGAGAAG 41914 Query 59886 GCTGGTCTGTTCCGTGCCATAGAGAC-GTCCCCCGCAGTTAAACAAAAAGCAGAATGGGC 59944 | | || ||||| || || ||||| |||||| || || | || || || ||||| Sbjct 41913 ACCCGCCTCTTCCGGGCGATCGAGACCGTCCCCTGC-GTCGGCAAGAAGGCCGACTGGGC 41855 Query 59945 CATGCAGTGGATGAGTCCTGGAGCATCATTTGCACAACGTCTCATAGCTTTTGCATGCGT 60004 | | ||||| || | | || | || | || ||| | || || || ||||| Sbjct 41854 GGTCCGCTGGATCCGTTCGTCGGATTCCTACGCCGAGCGCCTCGTTGCCTTCGCCTGCGT 41795 Query 60005 GGAAGGAATCTTCTTCTCTGGCTCGTTCTGTGCTATTTTCTGGCTCAAAAAGCGTGGCCT 60064 ||||| ||||||||||| ||||| ||||| || || ||||||||||| ||||| || || Sbjct 41794 CGAAGGCATCTTCTTCTCCGGCTCCTTCTGCGCAATCTTCTGGCTCAAGAAGCGCGGACT 41735 Query 60065 CATGCCGGGCCTGAGTTTCTCCAACGAGCTGATTTCCCGGGACGAGGGCCTCCA 60118 |||||| ||||| | |||||||||||||| || || || |||||||||||||| Sbjct 41734 CATGCCTGGCCTCACGTTCTCCAACGAGCTCATCTCTCGCGACGAGGGCCTCCA 41681 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548248576623840