Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eichhornia_20paniculata_20[genbank_20GCA_5F001647135.1_202016-05-02] 40,286 sequences; 571,388,321 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq2656 156 5e-33 seq32078 134 2e-26 seq7765 134 2e-26 seq2510 129 6e-25 seq5339 87.8 2e-12 seq1478 87.8 2e-12 seq151 86.0 7e-12 seq45 86.0 7e-12 seq1629 84.2 2e-11 seq138 84.2 2e-11 >seq2656 Length=42395 Score = 156 bits (172), Expect = 5e-33 Identities = 296/429 (69%), Gaps = 14/429 (3%) Strand=Plus/Plus Query 74790 TCATTCGAAAACGAAAGGCCAGGCATAAGTCCACGCTTCTTCAACCAAAAGATGGCACAG 74849 || || || |||| ||||||||||| ||||| |||||||| | ||| ||||| || ||| Sbjct 41708 TCGTTGGAGAACGTGAGGCCAGGCATGAGTCCGCGCTTCTTGAGCCAGAAGATTGCGCAG 41767 Query 74850 AAGGAACCACTGAAGAAGATGCCTTCGACACACGCAAAGGCGACAAGGCGTTGCGCGAAC 74909 ||||| || |||||||||||||||||| || || ||||| || ||||| | ||| | Sbjct 41768 AAGGAGCCGGAGAAGAAGATGCCTTCGACGCAGGCGAAGGCAACGAGGCGCTCGGCGTAG 41827 Query 74910 GGTGCATCGGAAGTCATCCAAGTCTGA--GCCCATTCAGCTTTTCGTTTGAC--CGCA-G 74964 | | ||| ||||| | || ||||| || || || ||| | |||| | Sbjct 41828 GAATCCGACGAACGGATCCA--GCGGACCGCCCAGTCGGCCTT---CTTGCCGACGCAGG 41882 Query 74965 GGACAGTATCGATCGCTTGGAAGAGGCTTGCCTTCTCTTCGGGATCCTTGACGAGCTTGT 75024 |||| || |||||||| ||||||||| | |||||| || || ||||||| | Sbjct 41883 GGACGGTCTCGATCGCCCGGAAGAGGCGGGTCTTCTCGTCCGGGTCCTTGATATAAGACT 41942 Query 75025 CAATCATAAGTGAGTACGTCTCCGAATGAATCGACTCGTTGAACGACTGGTACGCGTAGA 75084 | | | || |||||| |||| || || || |||| || |||| || |||||| Sbjct 41943 CGAGGAGGAGGGAGTACATCTCGGAGTGGATGTTCTCGATGGCAATCTGGAACCCGTAGA 42002 Query 75085 AAGACCGCGCCTCTGCAATCTGTACATCCTT--TGAAAAATTCATGTCGATATTCTCCAT 75142 | | |||||||| | | ||| || || || |||| | | ||| ||||| | Sbjct 42003 AGGCGCGCGCCTCCGGGAGCTGCACGTCGTTCATGAACCGGGC--GGCGAGGTTCTCGAG 42060 Query 75143 GACGATGCCGTCCGAGGCGGCGAAAAAAGCCAGTACCATTTTGATAAAGTGGCGCTCATC 75202 ||||||||||| ||||||||||| || || || || ||| |||||||| || || Sbjct 42061 AACGATGCCGTCGGAGGCGGCGAAGAAGGCGAGGACGTGGGAGATGAAGTGGCGATCGTC 42120 Query 75203 GTCAGTGAG 75211 ||| || || Sbjct 42121 GTCCGTCAG 42129 >seq32078 Length=1569 Score = 134 bits (148), Expect = 2e-26 Identities = 284/413 (69%), Gaps = 12/413 (3%) Strand=Plus/Minus Query 74805 AGGCCAGGCATAAGTCCACGCTTCTTCAACCAAAAGATGGCACAGAAGGAACCACTGAAG 74864 || |||||||| || || |||||||| | ||| ||||||| || ||||| || |||| Sbjct 1091 AGCCCAGGCATGAGGCCCCGCTTCTTGAGCCAGAAGATGGAGCAAAAGGAGCCGGAGAAG 1032 Query 74865 AAGATGCCTTCGACACACGCAAAGGCGACAAGGCGTTGCGCGAACGGTGCATCG--GAAG 74922 ||||| || ||||| || ||||||||||| | ||| | || || || || ||| || Sbjct 1031 AAGATACCCTCGACGCAGGCAAAGGCGACGATGCGCT-CGGCAAAGGAGC-TCGACGAGT 974 Query 74923 TCATCCAAGTCTGAGCCCATTCAGCTTTTCGTTTGACCGCA-GGGACAGTATCGATCGCT 74981 |||||| | ||||||| || || ||| || |||| ||||| || |||||||| Sbjct 973 GGATCCAACGCAGAGCCCAGTCGGC-CTTCTTTCCGACGCAGGGGACGGTTTCGATCGCG 915 Query 74982 TGGAAGAGGCTTGCCTTCTCTTCGGGATCCTTGACGAGCTTGTCAATCATAAGTGAGTAC 75041 ||||||||| | |||||| |||| ||||||| | | || | | || |||||| Sbjct 914 CGGAAGAGGCGCGACTTCTCCTCGGAGTCCTTGATGTAGGTCTCGAGGAGGAGGGAGTAC 855 Query 75042 GTCTCCGAATGAATCGACTCGTTGAACGA-CTGGTACGCGTAGAAAGACCGCGCCTCTGC 75100 |||| || || || |||| || ||| |||| | ||||||| | || ||||| | Sbjct 854 ATCTCGGAGTGGATGTTCTCGATG-GCGATCTGGAAGCCGTAGAAGGCGCGGGCCTCGGG 796 Query 75101 AATCTGTACATC--CTTTGAAAAATTCATGTCGATATTCTCCATGACGATGCCGTCCGAG 75158 | || || || |||| | | ||| ||||| | |||||||||||| || Sbjct 795 GACTTGCACGTCGGACATGAAGCGGCC--GGCGAGGTTCTCGAGGACGATGCCGTCGGAC 738 Query 75159 GCGGCGAAAAAAGCCAGTACCATTTTGATAAAGTGGCGCTCATCGTCAGTGAG 75211 |||||||| || || || || || ||| ||||||| ||| | |||| Sbjct 737 GCGGCGAAGAAGGCGAGGACGTGGGAGACGAAGCGGCGCTCGTCGGCGTTGAG 685 >seq7765 Length=42474 Score = 134 bits (148), Expect = 2e-26 Identities = 284/413 (69%), Gaps = 12/413 (3%) Strand=Plus/Plus Query 74805 AGGCCAGGCATAAGTCCACGCTTCTTCAACCAAAAGATGGCACAGAAGGAACCACTGAAG 74864 || |||||||| || || |||||||| | ||| ||||||| || ||||| || |||| Sbjct 40092 AGCCCAGGCATGAGGCCCCGCTTCTTGAGCCAGAAGATGGAGCAAAAGGAGCCGGAGAAG 40151 Query 74865 AAGATGCCTTCGACACACGCAAAGGCGACAAGGCGTTGCGCGAACGGTGCATCG--GAAG 74922 ||||| || ||||| || ||||||||||| | ||| | || || || || ||| || Sbjct 40152 AAGATACCCTCGACGCAGGCAAAGGCGACGATGCGCT-CGGCAAAGGAGC-TCGACGAGT 40209 Query 74923 TCATCCAAGTCTGAGCCCATTCAGCTTTTCGTTTGACCGCA-GGGACAGTATCGATCGCT 74981 |||||| | ||||||| || || ||| || |||| ||||| || |||||||| Sbjct 40210 GGATCCAACGCAGAGCCCAGTCGGC-CTTCTTTCCGACGCAGGGGACGGTTTCGATCGCG 40268 Query 74982 TGGAAGAGGCTTGCCTTCTCTTCGGGATCCTTGACGAGCTTGTCAATCATAAGTGAGTAC 75041 ||||||||| | |||||| |||| ||||||| | | || | | || |||||| Sbjct 40269 CGGAAGAGGCGCGACTTCTCCTCGGAGTCCTTGATGTAGGTCTCGAGGAGGAGGGAGTAC 40328 Query 75042 GTCTCCGAATGAATCGACTCGTTGAACGA-CTGGTACGCGTAGAAAGACCGCGCCTCTGC 75100 |||| || || || |||| || ||| |||| | ||||||| | || ||||| | Sbjct 40329 ATCTCGGAGTGGATGTTCTCGATG-GCGATCTGGAAGCCGTAGAAGGCGCGGGCCTCGGG 40387 Query 75101 AATCTGTACATC--CTTTGAAAAATTCATGTCGATATTCTCCATGACGATGCCGTCCGAG 75158 | || || || |||| | | ||| ||||| | |||||||||||| || Sbjct 40388 GACTTGCACGTCGGACATGAAGCGGCC--GGCGAGGTTCTCGAGGACGATGCCGTCGGAC 40445 Query 75159 GCGGCGAAAAAAGCCAGTACCATTTTGATAAAGTGGCGCTCATCGTCAGTGAG 75211 |||||||| || || || || || ||| ||||||| ||| | |||| Sbjct 40446 GCGGCGAAGAAGGCGAGGACGTGGGAGACGAAGCGGCGCTCGTCGGCGTTGAG 40498 >seq2510 Length=43382 Score = 129 bits (142), Expect = 6e-25 Identities = 283/413 (69%), Gaps = 12/413 (3%) Strand=Plus/Minus Query 74805 AGGCCAGGCATAAGTCCACGCTTCTTCAACCAAAAGATGGCACAGAAGGAACCACTGAAG 74864 || |||||||| || || |||||||| | ||| ||||||| |||||||| || |||| Sbjct 21185 AGCCCAGGCATGAGGCCTCGCTTCTTGAGCCAGAAGATGGAGCAGAAGGAGCCGGAGAAG 21126 Query 74865 AAGATGCCTTCGACACACGCAAAGGCGACAAGGCGTTGCGCGAACGGTGCATCG--GAAG 74922 ||||| || ||||| || ||||||||||| | ||| | || || || | ||| || Sbjct 21125 AAGATACCCTCGACGCAGGCAAAGGCGACGATGCGCT-CGGCAAAGGAAC-TCGACGAGT 21068 Query 74923 TCATCCAAGTCTGAGCCCATTCAGCTTTTCGTTTGACCGCA-GGGACAGTATCGATCGCT 74981 |||||| | | ||||| || || ||| || |||| ||||| || |||||||| Sbjct 21067 GGATCCAACGCAGCGCCCACTCGGC-CTTCTTTCCGACGCAGGGGACGGTCTCGATCGCG 21009 Query 74982 TGGAAGAGGCTTGCCTTCTCTTCGGGATCCTTGACGAGCTTGTCAATCATAAGTGAGTAC 75041 ||||||||| | |||||| |||| ||||||| | | || | | || |||||| Sbjct 21008 CGGAAGAGGCGCGACTTCTCCTCGGAGTCCTTGATGTAGGTCTCGAGGAGGAGGGAGTAC 20949 Query 75042 GTCTCCGAATGAATCGACTCGTTGAACGA-CTGGTACGCGTAGAAAGACCGCGCCTCTGC 75100 |||| || || || |||| || ||| |||| | ||||||| | || ||||| | Sbjct 20948 ATCTCGGAGTGGATGTTCTCGATG-GCGATCTGGAAGCCGTAGAAGGCGCGGGCCTCGGG 20890 Query 75101 AATCTGTACATC--CTTTGAAAAATTCATGTCGATATTCTCCATGACGATGCCGTCCGAG 75158 | || || || |||| | | ||| ||||| | |||||||||||| || Sbjct 20889 GACTTGCACGTCGGACATGAAGCGGCC--GGCGAGGTTCTCGAGGACGATGCCGTCGGAC 20832 Query 75159 GCGGCGAAAAAAGCCAGTACCATTTTGATAAAGTGGCGCTCATCGTCAGTGAG 75211 |||||||| || || || || || ||| ||||||| ||| | |||| Sbjct 20831 GCGGCGAAGAAGGCGAGGACGTGGGAGACGAAGCGGCGCTCGTCGGCGTTGAG 20779 Score = 98.7 bits (108), Expect = 1e-15 Identities = 249/368 (68%), Gaps = 12/368 (3%) Strand=Plus/Minus Query 74850 AAGGAACCACTGAAGAAGATGCCTTCGACACACGCAAAGGCGACAAGGCGTTGCGCGAAC 74909 ||||| || ||||||||| || ||||| || ||||||||||| | ||| | || || Sbjct 20391 AAGGAGCCGGAGAAGAAGATACCCTCGACGCAGGCAAAGGCGACGATGCGCT-CGGCAAA 20333 Query 74910 GGTGCATCG--GAAGTCATCCAAGTCTGAGCCCATTCAGCTTTTCGTTTGACCGCA-GGG 74966 || || ||| || |||||| | ||||||| || || ||| || |||| ||| Sbjct 20332 GGAGC-TCGACGAGTGGATCCAACGCAGAGCCCAGTCGGC-CTTCTTTCCGACGCAGGGG 20275 Query 74967 ACAGTATCGATCGCTTGGAAGAGGCTTGCCTTCTCTTCGGGATCCTTGACGAGCTTGTCA 75026 || || |||||||| ||||||||| | |||||| |||| ||||||| | | || Sbjct 20274 ACGGTTTCGATCGCGCGGAAGAGGCGCGACTTCTCCTCGGAGTCCTTGATGTAGGTCTCG 20215 Query 75027 ATCATAAGTGAGTACGTCTCCGAATGAATCGACTCGTTGAACGA-CTGGTACGCGTAGAA 75085 | | || |||||| |||| || || || |||| || ||| |||| | ||||||| Sbjct 20214 AGGAGGAGGGAGTACATCTCGGAGTGGATGTTCTCGATG-GCGATCTGGAAGCCGTAGAA 20156 Query 75086 AGACCGCGCCTCTGCAATCTGTACATC--CTTTGAAAAATTCATGTCGATATTCTCCATG 75143 | || ||||| | | || || || |||| | | ||| ||||| | | Sbjct 20155 GGCGCGGGCCTCGGGGACTTGCACGTCGGACATGAAGCGGCC--GGCGAGGTTCTCGAGG 20098 Query 75144 ACGATGCCGTCCGAGGCGGCGAAAAAAGCCAGTACCATTTTGATAAAGTGGCGCTCATCG 75203 ||||||||||| || |||||||| || || || || || ||| ||||||| ||| Sbjct 20097 ACGATGCCGTCGGACGCGGCGAAGAAGGCGAGGACGTGGGAGACGAAGCGGCGCTCGTCG 20038 Query 75204 TCAGTGAG 75211 | |||| Sbjct 20037 GCGTTGAG 20030 >seq5339 Length=28842 Score = 87.8 bits (96), Expect = 2e-12 Identities = 65/75 (87%), Gaps = 1/75 (1%) Strand=Plus/Minus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 ||||||| |||| |||| |||| ||||||||||||||||||||||||||| ||||| Sbjct 6588 TGCTTTCATTGAGAGTTGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 6529 Query 79684 TGAGCTACGAAAGCA 79698 ||||||| ||||||| Sbjct 6528 TGAGCTATGAAAGCA 6514 >seq1478 Length=63443 Score = 87.8 bits (96), Expect = 2e-12 Identities = 65/75 (87%), Gaps = 1/75 (1%) Strand=Plus/Plus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 ||||||| |||| |||| |||| ||||||||||||||||||||||||||| ||||| Sbjct 9565 TGCTTTCATTGAGAGTTGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 9624 Query 79684 TGAGCTACGAAAGCA 79698 ||||||| ||||||| Sbjct 9625 TGAGCTATGAAAGCA 9639 >seq151 Length=110950 Score = 86.0 bits (94), Expect = 7e-12 Identities = 64/74 (86%), Gaps = 1/74 (1%) Strand=Plus/Minus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 ||||||| |||| |||| |||| ||||||||||||||||||||||||||| ||||| Sbjct 71193 TGCTTTCATTGAGAGTTGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 71134 Query 79684 TGAGCTACGAAAGC 79697 ||||||| |||||| Sbjct 71133 TGAGCTATGAAAGC 71120 >seq45 Length=181720 Score = 86.0 bits (94), Expect = 7e-12 Identities = 64/74 (86%), Gaps = 1/74 (1%) Strand=Plus/Plus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 ||||||| |||| |||| |||| ||||||||||||||||||||||||||| ||||| Sbjct 158326 TGCTTTCATTGAGAGTTGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 158385 Query 79684 TGAGCTACGAAAGC 79697 ||||||| |||||| Sbjct 158386 TGAGCTATGAAAGC 158399 >seq1629 Length=52694 Score = 84.2 bits (92), Expect = 2e-11 Identities = 65/76 (86%), Gaps = 1/76 (1%) Strand=Plus/Plus Query 79624 CTGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAA 79682 |||||||| |||| | || |||| ||||||||||||||||||||||||||| ||||| Sbjct 8426 CTGCTTTCATTGAGAGTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAA 8485 Query 79683 TTGAGCTACGAAAGCA 79698 ||||||| ||||||| Sbjct 8486 CTGAGCTATGAAAGCA 8501 >seq138 Length=112799 Score = 84.2 bits (92), Expect = 2e-11 Identities = 65/76 (86%), Gaps = 1/76 (1%) Strand=Plus/Plus Query 79623 ACTGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCA 79681 |||||| || |||| ||||| |||| ||||||||||||||||||||||||||| |||| Sbjct 82669 ACTGCTCTCATTGAGATTTGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCA 82728 Query 79682 ATTGAGCTACGAAAGC 79697 | ||||||| || ||| Sbjct 82729 ACTGAGCTATGAGAGC 82744 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 546940435702800