Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eichhornia_20paniculata_20[genbank_20GCA_5F001647135.1_202016-05-02] 40,286 sequences; 571,388,321 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq2468 122 7e-23 seq564 100 2e-16 seq220 91.5 1e-13 seq5010 84.2 2e-11 seq2385 84.2 2e-11 seq2700 82.4 7e-11 >seq2468 Length=52418 Score = 122 bits (134), Expect = 7e-23 Identities = 158/216 (73%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 39081 ATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTG 39140 ||| || ||| ||| || || || || || |||||||| || || |||| |||||||| Sbjct 921 ATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCAAGGGTACGCCCGTCTTCAAGCTG 862 Query 39141 TTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTT 39200 ||||| || || || || ||||||||||| | || | || ||| |||||| ||| || Sbjct 861 CTTGCCGGCGAAGATGAGCCGCTGCTGGTCCGGCGGGATGCCCTCCTTGTCCTGGATCTT 802 Query 39201 CTGTTTGAGCGTCGCC-ACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCG 39259 | |||| ||| | | | || ||| ||||||||| || | ||||| | || |||| Sbjct 801 CGCCTTGA-CGTTGTCGATGGTGTCGGACGACTCCACCTCGAGGGTGATCGTCTTGCCCG 743 Query 39260 TCAGCGTTTTAACAAAGATTTGCATCTTTACGCCGA 39295 | || || || || ||||| |||||||||||| ||| Sbjct 742 TGAGGGTCTTCACGAAGATCTGCATCTTTACGGCGA 707 Score = 122 bits (134), Expect = 7e-23 Identities = 158/216 (73%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 39081 ATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTG 39140 ||| || ||| ||| || || || || || |||||||| || || |||| |||||||| Sbjct 10120 ATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCAAGGGTGCGCCCGTCTTCAAGCTG 10061 Query 39141 TTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTT 39200 ||||| || || || || ||||||||||| | || | || ||| |||||| ||| || Sbjct 10060 CTTGCCGGCGAAGATGAGCCGCTGCTGGTCCGGCGGGATGCCCTCCTTGTCCTGGATCTT 10001 Query 39201 CTGTTTGAGCGTCG-CCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCG 39259 | |||| ||| | | | || ||| ||||||||| || | ||||| | || |||| Sbjct 10000 CGCCTTGA-CGTTGTCGATGGTGTCGGACGACTCCACCTCGAGGGTGATCGTCTTGCCCG 9942 Query 39260 TCAGCGTTTTAACAAAGATTTGCATCTTTACGCCGA 39295 | || || || |||||||| ||||||||| || ||| Sbjct 9941 TGAGGGTCTTCACAAAGATCTGCATCTTTCCGGCGA 9906 Score = 93.3 bits (102), Expect = 4e-14 Identities = 138/193 (72%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 39081 ATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTG 39140 ||| || ||| ||| || || || || || |||||||| || || |||| |||||||| Sbjct 10465 ATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCAAGGGTGCGCCCGTCTTCAAGCTG 10406 Query 39141 TTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTT 39200 ||||| || || || || ||||||||||| | || | || ||| |||||| ||| || Sbjct 10405 CTTGCCGGCGAAGATGAGCCGCTGCTGGTCCGGCGGGATGCCCTCCTTGTCCTGGATCTT 10346 Query 39201 CTGTTTGAGCGTCG-CCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCG 39259 | |||| ||| | | | || ||| ||||||||| || | ||||| | || |||| Sbjct 10345 CGCCTTGA-CGTTGTCGATGGTGTCGGACGACTCCACCTCGAGGGTGATCGTCTTGCCCG 10287 Query 39260 TCAGCGTTTTAAC 39272 | || || || || Sbjct 10286 TGAGGGTCTTCAC 10274 >seq564 Length=78751 Score = 100 bits (110), Expect = 2e-16 Identities = 150/208 (72%), Gaps = 4/208 (2%) Strand=Plus/Plus Query 39082 TGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGT 39141 || || ||| ||| || || || || || || ||||| || ||| |||| || || || Sbjct 11251 TGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCAAGGGTGCGTCCGTCCTCGAGTTGC 11310 Query 39142 TTGCCCGCAAATATAAGACGCTGCTGGT-CGGTGGGCACGCTCTCTTTGTCCATGATTTT 39200 || || || ||||| ||||||||||||| ||| ||| | || || |||||| || || Sbjct 11311 TTTCCGGCGAATATGAGACGCTGCTGGTCCGGCGGGATCCCT-TCCTTGTCCTGAATCTT 11369 Query 39201 CTGTTTGAGCGTCG-CCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCG 39259 | || | ||| | | | || || ||||||||| || | ||||| | || |||| Sbjct 11370 CGCCTTCA-CGTTGTCGATGGTGTCCGACGACTCCACCTCGAGGGTGATCGTCTTCCCCG 11428 Query 39260 TCAGCGTTTTAACAAAGATTTGCATCTT 39287 |||||||||| || ||||| |||||||| Sbjct 11429 TCAGCGTTTTCACGAAGATCTGCATCTT 11456 Score = 96.9 bits (106), Expect = 3e-15 Identities = 150/209 (72%), Gaps = 4/209 (2%) Strand=Plus/Plus Query 39082 TGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGT 39141 || || ||| ||| || || || || || || ||||| || ||| |||| || || || Sbjct 22090 TGGAGTGTGGACTCCTTCTGGATGTTGTAGTCAGCAAGGGTGCGTCCGTCCTCGAGTTGC 22149 Query 39142 TTGCCCGCAAATATAAGACGCTGCTGGT-CGGTGGGCACGCTCTCTTTGTCCATGATTTT 39200 || ||||| ||||| ||||||||||||| ||| ||| | || || |||||| || || Sbjct 22150 TTTCCCGCGAATATGAGACGCTGCTGGTCCGGCGGGATCCCT-TCCTTGTCCTGAATCTT 22208 Query 39201 CTGTTTGAGCGTCG-CCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCG 39259 | || | ||| | | | || || ||||||||| || | ||||| | || |||| Sbjct 22209 CGCCTTCA-CGTTGTCGATGGTGTCCGACGACTCCACCTCGAGGGTGATCGTCTTCCCCG 22267 Query 39260 TCAGCGTTTTAACAAAGATTTGCATCTTT 39288 |||| || || || ||||| ||||||||| Sbjct 22268 TCAGGGTCTTCACGAAGATCTGCATCTTT 22296 >seq220 Length=196394 Score = 91.5 bits (100), Expect = 1e-13 Identities = 153/219 (70%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 39069 GCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTC 39128 ||| | ||| | ||| || ||| ||| || || || || || ||||| || || || | Sbjct 149695 GCGGAGCACAAGATGCAGAGTGGACTCCTTCTGGATGTTGTAGTCGGCGAGAGTGCGGCC 149754 Query 39129 GTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTT 39188 ||| || | |||||||||||| || || || | |||||||| | || | || ||| || Sbjct 149755 GTCCTCCAACTGTTTGCCCGCGAAGATGAGCCTTTGCTGGTCCGGCGGGATGCCCTCCTT 149814 Query 39189 GTCCATGATTTTCTGTTTGAGCGTCG-CCACCGTATCGCTCGACTCCACGTCCACCGTGA 39247 |||| ||| || |||| ||| | | | || || |||||||| || | |||| Sbjct 149815 GTCCTGGATCTTGGCCTTGA-CGTTGTCGATGGTGTCCGAGGACTCCACCTCGAGGGTGA 149873 Query 39248 TACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCATCT 39286 | | || || || || || ||||||||||| ||||||| Sbjct 149874 TCGTCTTGCCTGTGAGGGTCTTAACAAAGATCTGCATCT 149912 >seq5010 Length=51657 Score = 84.2 bits (92), Expect = 2e-11 Identities = 153/220 (70%), Gaps = 8/220 (4%) Strand=Plus/Minus Query 39069 GCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTC 39128 ||| | ||||| || || ||| ||||| || || |||||||||||||| || || | Sbjct 38735 GCGGAGCACCAGGTGGAGGGTGGATTCTTTCTGAATGTTATAATCGGCAAGGGTACGGCC 38676 Query 39129 GTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTT 39188 || |||||||| ||||| || || || || | |||||| || | ||| | | ||| || Sbjct 38675 ATCCTCAAGCTGCTTGCCAGCGAAGATGAGCCTCTGCTGATCCGGGGGAATCCCCTCCTT 38616 Query 39189 GTCCATGATTTTCTGTTTGAGCGTCG-CCACCGTATC---GCTCGACTCCACGTCCACCG 39244 |||| |||||| | | | ||| | | | ||||| ||| ||| || || | | Sbjct 38615 GTCCTGGATTTT-AGCCTTAACGTTGTCAATGGTATCCGAGCT---CTCGACTTCAAGGG 38560 Query 39245 TGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 |||| |||| || || || || || || ||||| ||||| Sbjct 38559 TGATGGTTTTGCCAGTAAGTGTCTTGACGAAGATCTGCAT 38520 >seq2385 Length=44452 Score = 84.2 bits (92), Expect = 2e-11 Identities = 139/198 (70%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 39093 CTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAA 39152 ||| || || || || || || || || || || | || || || |||||||| ||||| Sbjct 34006 CTCCTTCTGGATGTTGTAGTCAGCCAGGGTGCGGCCATCCTCGAGTTGTTTGCCAGCAAA 33947 Query 39153 TATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGT 39212 || |||||||||||||| | || | | ||| |||||| ||| ||| | | | | | Sbjct 33946 GATCAGACGCTGCTGGTCCGGAGGAATTCCCTCCTTGTCC-TGAATTTTGGCCTTAACAT 33888 Query 39213 CG-CCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAA 39271 | | | |||||| ||||| || || | ||||| | || || |||| || || | Sbjct 33887 TGTCGATTGTATCGGATGACTCGACCTCAAGAGTGATGGTCTTCCCGGTCAATGTCTTTA 33828 Query 39272 CAAAGATTTGCATCTTTA 39289 ||||||||||||||| || Sbjct 33827 CAAAGATTTGCATCTGTA 33810 >seq2700 Length=42081 Score = 82.4 bits (90), Expect = 7e-11 Identities = 144/207 (70%), Gaps = 2/207 (1%) Strand=Plus/Minus Query 39082 TGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGT 39141 || || ||| ||| || || || ||||| ||||| || || || | || || ||||| Sbjct 28814 TGGAGGGTGGACTCCTTCTGGATGTTATAGTCGGCGAGGGTGCGGCCATCCTCGAGCTGC 28755 Query 39142 TTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTC 39201 || || || || || || ||||||||||| | || | | || |||||| ||| || Sbjct 28754 TTTCCGGCGAAGATGAGCCGCTGCTGGTCCGGCGGGATACCTTCCTTGTCCTGGATCTTG 28695 Query 39202 TGTTTGAGCGTCGCC-ACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGT 39260 || | ||| | | | || || |||||| || || | ||||| | || ||||| Sbjct 28694 GCCTTCA-CGTTGTCGATGGTGTCCGACGACTCAACCTCAAGGGTGATCGTCTTCCCCGT 28636 Query 39261 CAGCGTTTTAACAAAGATTTGCATCTT 39287 |||||| || |||||||| |||||||| Sbjct 28635 CAGCGTCTTCACAAAGATCTGCATCTT 28609 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429334699285118