Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eichhornia_20paniculata_20[genbank_20GCA_5F001647135.1_202016-05-02] 40,286 sequences; 571,388,321 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq410 113 3e-20 seq2468 104 2e-17 seq2385 89.7 3e-13 seq263 86.0 4e-12 seq220 82.4 5e-11 >seq410 Length=85275 Score = 113 bits (124), Expect = 3e-20 Identities = 145/200 (73%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 || |||||||| ||||| || || ||||| || || |||||||| || || || || || Sbjct 46366 AAGATGCAGATCTTCGTGAAGACTCTCACCGGGAAGACGATCACCCTTGAGGTGGAGTCA 46425 Query 23668 ACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGAT 23727 ||||||| | || | | || || || ||||| || || ||||||| || Sbjct 46426 TCGGACACCATCGACAACGTGAAGGCGAAGATCCAGGACAAGGAGGGAATACCGCCGGAC 46485 Query 23728 CAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTAC 23787 |||||||| | || || |||||||| || || || |||| |||||| | | ||||||| Sbjct 46486 CAACAGCGGCTCATCTTCGCCGGCAAGCAGCTCGAGGACGGACGCACACTCGCCGATTAC 46545 Query 23788 AACATACAAAAAGAGTCCAC 23807 ||||| || || |||||||| Sbjct 46546 AACATCCAGAAGGAGTCCAC 46565 >seq2468 Length=52418 Score = 104 bits (114), Expect = 2e-17 Identities = 143/200 (72%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 || |||||||| ||||| || ||||||||||| || |||||||| ||||| || || || Sbjct 715 AAGATGCAGATCTTCGTGAAGACCCTCACGGGCAAGACGATCACCCTCGAGGTGGAGTCG 774 Query 23668 ACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGAT 23727 | ||||| | || | | || || || ||||| || || | ||||| || Sbjct 775 TCCGACACCATCGACAACGTCAAGGCGAAGATCCAGGACAAGGAGGGCATCCCGCCGGAC 834 Query 23728 CAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTAC 23787 || ||||| | || || |||||||| || || ||||||| || || | | ||| ||| Sbjct 835 CAGCAGCGGCTCATCTTCGCCGGCAAGCAGCTTGAAGACGGGCGTACCCTTGCCGACTAC 894 Query 23788 AACATACAAAAAGAGTCCAC 23807 ||||| || || |||||||| Sbjct 895 AACATCCAGAAGGAGTCCAC 914 Score = 104 bits (114), Expect = 2e-17 Identities = 143/200 (72%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 || |||||||| || || || ||||||||||| || |||||||| ||||| || || || Sbjct 9914 AAGATGCAGATCTTTGTGAAGACCCTCACGGGCAAGACGATCACCCTCGAGGTGGAGTCG 9973 Query 23668 ACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGAT 23727 | ||||| | || | | || || || ||||| || || | ||||| || Sbjct 9974 TCCGACACCATCGACAACGTCAAGGCGAAGATCCAGGACAAGGAGGGCATCCCGCCGGAC 10033 Query 23728 CAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTAC 23787 || ||||| | || || |||||||| || || ||||||| ||||| | | ||| ||| Sbjct 10034 CAGCAGCGGCTCATCTTCGCCGGCAAGCAGCTTGAAGACGGGCGCACCCTTGCCGACTAC 10093 Query 23788 AACATACAAAAAGAGTCCAC 23807 ||||| || || |||||||| Sbjct 10094 AACATCCAGAAGGAGTCCAC 10113 Score = 91.5 bits (100), Expect = 1e-13 Identities = 131/185 (71%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 23623 GTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACGGACACTGTTGAA 23682 || || ||||||||||| || |||||||| ||||| || || || | ||||| | || Sbjct 10274 GTGAAGACCCTCACGGGCAAGACGATCACCCTCGAGGTGGAGTCGTCCGACACCATCGAC 10333 Query 23683 ATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAACAGCGTTTAATA 23742 | | || || || ||||| || || | ||||| || || ||||| | || Sbjct 10334 AACGTCAAGGCGAAGATCCAGGACAAGGAGGGCATCCCGCCGGACCAGCAGCGGCTCATC 10393 Query 23743 TTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAACATACAAAAAGAG 23802 || |||||||| || || ||||||| ||||| | | ||| |||||||| || || ||| Sbjct 10394 TTCGCCGGCAAGCAGCTTGAAGACGGGCGCACCCTTGCCGACTACAACATCCAGAAGGAG 10453 Query 23803 TCCAC 23807 ||||| Sbjct 10454 TCCAC 10458 >seq2385 Length=44452 Score = 89.7 bits (98), Expect = 3e-13 Identities = 140/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| || || || || || || || ||||||||||| || || ||||| || || Sbjct 34422 ATGCAGATCTTTGTGAAGACGCTGACTGGCAAAACGATCACCCTTGAGGTTGAGTCATCG 34481 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| | || ||| | || | ||| ||| || || || || | || |||||||| Sbjct 34482 GACACCATCGACAATGTCAAGGC-AAAGATTCAGGATAAGGAGGGCATTCCTCCAGATCA 34540 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| | | || ||||| || ||||| ||||||| | || || | | |||||||| Sbjct 34541 GCAGAGGCTTATCTTTGCAGGGAAACAGTTGGAAGATGGGCGAACCCTCGCTGATTACAA 34600 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| || || || || || Sbjct 34601 CATCCAGAAGGAATCTAC 34618 Score = 89.7 bits (98), Expect = 3e-13 Identities = 140/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| || || || || || || || ||||||||||| || || ||||| || || Sbjct 34650 ATGCAGATCTTTGTGAAGACGCTGACTGGCAAAACGATCACCCTTGAGGTTGAGTCATCG 34709 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| | || ||| |||| | || || ||||| || || | || || || || Sbjct 34710 GACACCATCGACAATGTTAAGGC-CAAGATCCAAGACAAGGAGGGCATCCCCCCGGACCA 34768 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 || | | || ||||| || || || || || || | ||||||||| | |||||||| Sbjct 34769 GCAAAGGCTCATTTTTGCAGGGAAGCAGCTTGAGGATGGACGCACTTTGGCTGATTACAA 34828 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| ||||| || || || Sbjct 34829 CATCCAAAAGGAATCTAC 34846 Score = 82.4 bits (90), Expect = 5e-11 Identities = 139/199 (70%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| || || || || || | || || || || |||||||| || || || || | Sbjct 33815 ATGCAAATCTTTGTAAAGACATTGACCGGGAAGACCATCACTCTTGAGGTCGAGTCATCC 33874 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 || || | || ||| |||| | |||| || ||||| || || | || || || || Sbjct 33875 GATACAATCGACAATGTTAAGGCCAAAA-TTCAGGACAAGGAGGGAATTCCTCCGGACCA 33933 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 |||||| | || ||||| ||||||||||| || || | ||||| | | || ||||| Sbjct 33934 GCAGCGTCTGATCTTTGCTGGCAAACAACTCGAGGATGGCCGCACCCTGGCTGACTACAA 33993 Query 23790 CATACAAAAAGAGTCCACA 23808 ||| || || ||||| ||| Sbjct 33994 CATCCAGAAGGAGTCAACA 34012 >seq263 Length=97214 Score = 86.0 bits (94), Expect = 4e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| |||||||| ||||| || || || || ||||| || |||||||| | || Sbjct 78533 ATGCAGATCTTCGTTAAGACCCTGACCGGCAAGACCATCACCCTGGAAGTTGAGAGCTCG 78474 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| | || | | || || || || || || || | || || || || Sbjct 78473 GACACCATCGACAACGTCAAGGCCAAGATCCAGGATAAGGAGGGCATCCCCCCGGACCAG 78414 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||| | || || ||||||||||| || || || |||| ||||| | | || |||||| Sbjct 78413 CAGAGGTTGATCTTTGCCGGCAAGCAGCTCGAGGACGGCCGCACCCTCGCTGACTACAAC 78354 Query 23791 ATACAAAAAGAGTCCAC 23807 || || || ||||| || Sbjct 78353 ATCCAGAAGGAGTCAAC 78337 >seq220 Length=196394 Score = 82.4 bits (90), Expect = 5e-11 Identities = 139/199 (70%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 |||||| || ||||| || |||||||| || || || || || || || || || | | Sbjct 148999 AATGCAAATCTTCGTGAAGACCCTCACTGGTAAGACCATTACCCTGGAGGTGGAGAGCTC 148940 Query 23670 GGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATC 23728 |||||| |||| ||| | || | || | | ||||| || || | ||||| || | Sbjct 148939 TGACACTATTGATAATGTGAAGGCGAAGA-TCCAAGACAAGGAGGGGATCCCGCCGGACC 148881 Query 23729 AACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACA 23788 | ||| | | || || || || || || ||||| || | |||||||| | || || | Sbjct 148880 AGCAGAGACTCATCTTCGCTGGGAAGCAGCTGGAGGATGGGCGCACTTTGGCAGACTATA 148821 Query 23789 ACATACAAAAAGAGTCCAC 23807 |||| || ||||||||||| Sbjct 148820 ACATTCAGAAAGAGTCCAC 148802 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 337843642145288