Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Elaeis_20guineensis_20[refseq_20GCF_5F000442705.1_202013-08-13] 40,061 sequences; 1,535,178,229 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq67 114 3e-20 seq7 107 4e-18 seq6 105 1e-17 seq9 104 5e-17 seq5 104 5e-17 seq157 102 2e-16 seq15 100 6e-16 seq2 100 6e-16 seq13 98.7 2e-15 seq11 91.5 3e-13 >seq67 Length=1088699 Score = 114 bits (126), Expect = 3e-20 Identities = 575/898 (64%), Gaps = 20/898 (2%) Strand=Plus/Minus Query 229750 TTCTCTGCGTTCCCAATCCAATATCCCGATATGTGGGATATGTACAAGAAGGCGGTGGCA 229809 ||||| |||||| |||| || ||| | ||||||| |||||||||||||| || || Sbjct 292555 TTCTCGATGTTCCCCATCCGGTACCCCCAGGTGTGGGAGATGTACAAGAAGGCCGTCGCC 292496 Query 229810 ACTTTCTGGACCACTGAGGAAGT--TCCTCTGAACGCAGACGTCGTCGACTGGCGTGAGA 229867 | ||||||||| | ||||| || ||||| ||| ||| || | |||||| | | Sbjct 292495 TCCTTCTGGACCGCCGAGGAGGTCGACCTCT--CCGCCGACCTCCCCCACTGGCTCCACA 292438 Query 229868 AACTCAATGACGACGAACGTCATTTCATCAAACACATCCTAGGTTTTTTCGCAGGCTCCG 229927 |||| |||||| || || |||||| ||| |||| | ||| ||||| | ||||| Sbjct 292437 CCCTCACCCCCGACGAGCGCCACTTCATCTCCCACGTCCTTGCTTTCTTCGCCGCCTCCG 292378 Query 229928 ATGGTATTGTGATGGAAAATCT-GCAGACCAACTTTAGTGT-GGAAGTAACGGTTCCAGA 229985 | || || || | || || || || | || ||| | ||| || || | || | || Sbjct 292377 ACGGCATCGTCCTCGAGAACCTCGCCG-CCCGCTTCA-TGTCCGACGTCCAGATTGCCGA 292320 Query 229986 GGCACGGCAATTTTATGCTTACCAAACATTCAACGAATCTATCCATTCTGAACAATATGC 230045 ||| || || || | | ||| | | || |||| ||||| || || ||| | Sbjct 292319 GGCTCGCGCCTTCTACGGCTTCCAGATAGCCATCGAAAACATCCACTCCGAGATGTATTC 292260 Query 230046 TCTGCTTATCGACGCGCTTATTTCCGAC---GAGCAAGAACGGAACGAGCTTTTTGATGC 230102 ||| | | || | || ||| || || || || || |||||| ||| Sbjct 292259 TCTTTTGCTGGAATCCTACATCAAAGACCCTGACGAAAAA--GACCG-CCTTTTTCGTGC 292203 Query 230103 CATTGAAAACATCCCGGCGGTTCATAACAAGGCAAAGTGGGCTCAGAAATGGCTAGA-AC 230161 | || | |||||||||| || ||||| ||||||| | | ||| | || | Sbjct 292202 TGTCGAGACGGTCCCGGCGGTGGCGAAGAAGGCCCAGTGGGCGCTCCAGTGGATTGAGTC 292143 Query 230162 CTGGTAAATCGTTTGCCGAGCGTCTCGTCGCCTGGGTGTG-TGTTGAAGGTATTCTGTTT 230220 || | | || || || ||||| ||||| |||| | || |||||| || || | || Sbjct 292142 CTCG-GACTCCTTCGCGGAGCGCCTCGTGGCCT-TCTCTGCTGTTGAGGGGATCTTCTTC 292085 Query 230221 TCCGGGAGTTTCTGCGCCATCTTTTGGCTGCGGAACAAAGGTGTGATGCCTGGCCTCGGT 230280 ||||| ||||| ||||||| ||||| ||| || | ||||| || || Sbjct 292084 TCCGGCTCCTTCTGTTCCATCTTCTGGCTCAAGAAGCGCGGCCTCATGCCGGGGCTGACC 292025 Query 230281 CTGTCTAACGAGTTCATCAGTCGCGACGAGGGTCTCCATCAACAGTTCGGCGAGCTTATG 230340 | || |||||| ||||| ||||||||||| ||||| | |||| | || | Sbjct 292024 TTCTCCAACGAGCTCATCTCCCGCGACGAGGGCCTCCACTGCGACTTCGCCTGCCTCCTC 291965 Query 230341 TATTCAAAGCTCCAGAACAAGCTACCATTCGAGACGGTCAAACAAATCATTACAGAAGCA 230400 || || ||| | ||||||| || || |||| |||||| | || || Sbjct 291964 TACTCCCTCCTCAACCACAAGCTCCCTGAGGATCGCATCAAGTCAATCATCGCCGACGCT 291905 Query 230401 GTTGAAAACGAAAAGGAGTTCATTTGTGACGCTATTCC-ATGTCGCCTTATTGGCATGAA 230459 || || | ||| | ||||||| | || || || | || || || || | || ||||| Sbjct 291904 GTCGACATCGAGAGGGAGTTCGTCTGCGATGCGTTGCCGGTGGCG-CTGGTGGGGATGAA 291846 Query 230460 CGCTGAACTTATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTTGTTGCACTTGG 230519 | || | ||| | | |||||||| ||||| || || || | || | || | || Sbjct 291845 TGGGGATTTGATGAGCGAATACATCGAGTTCGTGGCGGATCGGCTCTTGGGGGCGTTGGG 291786 Query 230520 TTACGAGAAAGTGTACAACTCTAAGAACCCCTTTGCATTTATGGAGCTCATTTCGCTTCA 230579 | || ||| ||||| | || || || | | |||||| | || ||||| || Sbjct 291785 GTGCGGGAAGTTGTACGGGGCAGCCAATCCGTTCGATTGGATGGAGTTGATATCGCTCCA 291726 Query 230580 AGGGAAGACCAACTTCTTCGAAAAGCGTGTCAGTGACTATCAGAGGCCTGGTGTGATG 230637 |||||||| ||||| ||||| ||| | ||| | ||||| |||| | | | |||||| Sbjct 291725 GGGGAAGACGAACTTTTTCGAGAAGAGGGTCGGGGACTACCAGAAGGCGGCAGTGATG 291668 >seq7 Length=43454766 Score = 107 bits (118), Expect = 4e-18 Identities = 68/74 (92%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 165708 TTGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGA 165767 ||||||||||||||||||||||||||||| || || |||| || |||||||||||||||| Sbjct 18185484 TTGCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGA 18185425 Query 165768 GCCCCACGATGGGC 165781 |||||||| ||||| Sbjct 18185424 GCCCCACGGTGGGC 18185411 >seq6 Length=44357769 Score = 105 bits (116), Expect = 1e-17 Identities = 67/73 (92%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 165709 TGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAG 165768 |||||||||||||||||||||||||||| || || |||| || ||||||||||||||||| Sbjct 42324952 TGCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 42324893 Query 165769 CCCCACGATGGGC 165781 ||||||| ||||| Sbjct 42324892 CCCCACGGTGGGC 42324880 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||||||||||||| ||||||||||| || || |||| || |||||||||||||||||| Sbjct 5238499 GCCCGTCTAGCTCAGCCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 5238558 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 5238559 CCCACGGTGGGC 5238570 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||||||||||||| ||||||||||| || || |||| || |||||||||||||||||| Sbjct 37865313 GCCCGTCTAGCTCAGCCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 37865254 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 37865253 CCCACGGTGGGC 37865242 >seq9 Length=38056896 Score = 104 bits (114), Expect = 5e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||||||||||||||||||||||||| || || |||| || |||||||||||||||||| Sbjct 22672289 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 22672348 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 22672349 CCCACGGTGGGC 22672360 >seq5 Length=51955539 Score = 104 bits (114), Expect = 5e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||||||||||||||||||||||||| || || |||| || |||||||||||||||||| Sbjct 5459842 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 5459901 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 5459902 CCCACGGTGGGC 5459913 Score = 104 bits (114), Expect = 5e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||||||||||||||||||||||||| || || |||| || |||||||||||||||||| Sbjct 48503406 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 48503465 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 48503466 CCCACGGTGGGC 48503477 >seq157 Length=675770 Score = 102 bits (112), Expect = 2e-16 Identities = 70/79 (89%), Gaps = 0/79 (0%) Strand=Plus/Plus Query 165703 AACGCTTGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGG 165762 ||| |||||||||||||||||| |||||||||| || || |||| || ||||||||||| Sbjct 394089 AACACTTGCCCGTCTAGCTCAGATGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGG 394148 Query 165763 TTCGAGCCCCACGATGGGC 165781 ||||||||||||| ||||| Sbjct 394149 TTCGAGCCCCACGGTGGGC 394167 >seq15 Length=24314465 Score = 100 bits (110), Expect = 6e-16 Identities = 66/73 (90%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 165709 TGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAG 165768 |||||||||||||||| ||||||||||| || || |||| || ||||||||||||||||| Sbjct 15621194 TGCCCGTCTAGCTCAGCCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 15621135 Query 165769 CCCCACGATGGGC 165781 ||||||| ||||| Sbjct 15621134 CCCCACGGTGGGC 15621122 >seq2 Length=65558141 Score = 100 bits (110), Expect = 6e-16 Identities = 66/73 (90%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 165709 TGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAG 165768 ||||||||||||||||| |||||||||| || || |||| || ||||||||||||||||| Sbjct 30685401 TGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 30685342 Query 165769 CCCCACGATGGGC 165781 ||||||| ||||| Sbjct 30685341 CCCCACGGTGGGC 30685329 >seq13 Length=27817470 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||||||||||||| ||||||||||| || || |||| || |||||||||||||||||| Sbjct 22004979 GCCCGTCTAGCTCAGCCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 22005038 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 22005039 CCCACGGTGGGC 22005050 >seq11 Length=30068910 Score = 91.5 bits (100), Expect = 3e-13 Identities = 62/70 (89%), Gaps = 0/70 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||||| |||||||| || || |||| || |||| ||||||||||||| Sbjct 11908151 GCCCGTCTAGCTCAGTCGATAGAGCGCAAGGCTCTTAACCTTGTGGGCGTGGGTTCGAGC 11908092 Query 165770 CCCACGATGG 165779 |||||| ||| Sbjct 11908091 CCCACGGTGG 11908082 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1057281038444430