Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Elaeis_20guineensis_20[refseq_20GCF_5F000442705.1_202013-08-13] 40,061 sequences; 1,535,178,229 total letters Query= NC_001993.1 Length=236120 Score E Sequences producing significant alignments: (Bits) Value seq14 134 2e-26 seq389 109 8e-19 seq160 109 8e-19 seq19 107 3e-18 seq71 104 4e-17 seq12 104 4e-17 >seq14 Length=24379743 Score = 134 bits (148), Expect = 2e-26 Identities = 170/231 (74%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGA-AGCAAA 124597 ||||| || || || ||||| || ||||| || ||||| || | ||| |||| ||| | Sbjct 11038988 ATGCAGATCTTCATCAAGACCCTTACAGGGAAGACTATCACCCTTGAGGTTGAGAGCTCA 11039047 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 || || ||| |||| | ||| || ||||| ||||| || || || ||||||||||| Sbjct 11039048 -GACACCATTGATAATGTGAAAGCAAAGATTCAGGATAAGGAGGGCATCCCACCTGATCA 11039106 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 || | || || ||||| || || || | |||||| |||| ||||||| |||||| || Sbjct 11039107 GCAGCGCCTGATATTTGCTGGGAAGCAGCTTGAGGATGGTCGCACATTAGCAGATTACAA 11039166 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 || |||||||| || ||| | || ||||| | || ||| ||||||| || Sbjct 11039167 CATCCAAAAAGAGTCCACTCTTCACTTGGTCCTCCGATTAAGAGGTGGAAT 11039217 Score = 113 bits (124), Expect = 7e-20 Identities = 153/211 (73%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGA-AGCAAA 124597 ||||| || ||| | ||||| || || ||||| || || || | ||| |||| ||| | Sbjct 11038760 ATGCAGATCTTTGTGAAGACCCTTACTGGCAAGACAATCACCCTTGAGGTTGAGAGCTCA 11038819 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 || || ||| |||| | ||| || ||||| || ||||| || || ||||||||||| Sbjct 11038820 -GACACCATTGATAATGTGAAAGCTAAGATTCAGGACAAAGAGGGGATCCCACCTGATCA 11038878 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 || | || || ||||| || || || || |||||| |||| || || | ||| ||||| Sbjct 11038879 GCAGCGCCTGATCTTTGCTGGGAAGCAGTTGGAGGATGGTCGCACCTTGGCAGACTATAA 11038938 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTT 124748 || ||||| || || || ||||| ||||| Sbjct 11038939 CATCCAAAAGGAGTCGACCTTGCACCTGGTT 11038969 Score = 95.1 bits (104), Expect = 2e-14 Identities = 160/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| || ||| | ||||| ||||||| || || || || | ||| | || | Sbjct 11039444 ATGCAGATCTTTGTTAAGACTTTAACAGGGAAGACAATTACCTTGGAGGTGGAGAGTTCT 11039503 Query 124599 GATACAATTTCTAATTTAAA-ACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 || || ||| |||| | || ||| || ||||| || || || || ||||| |||||||| Sbjct 11039504 GACACCATTGATAATGTGAAGACA-AAGATTCAGGACAAGGAGGGCATACCCCCTGATCA 11039562 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 || | || || ||||| || || || | |||||| |||| || | | ||| || || Sbjct 11039563 GCAGCGCCTCATCTTTGCCGGGAAGCAGCTGGAGGATGGTCGCACTCTTGCAGACTACAA 11039622 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGT 124766 ||||| |||||||||||| | || | || | ||| | || |||||| Sbjct 11039623 CATTCAGAAAGAATCAACTCTTCACCTTGTCCTGCGTCTCCGTGGTGGT 11039671 >seq389 Length=334988 Score = 109 bits (120), Expect = 8e-19 Identities = 98/123 (80%), Gaps = 0/123 (0%) Strand=Plus/Plus Query 124629 CAAGATAAAGAAGGTATACCACCTGATCAACAAAGGCTTATTTTTGCAGGAAAACAATTA 124688 || || || || |||||||| || ||||||||||| | ||||| || |||||||| || Sbjct 298377 CAGGACAAGGAGGGTATACCCCCAGATCAACAAAGATTGATTTTCGCTGGAAAACAGTTG 298436 Query 124689 GAGGATAGTCGAACATTAGAAGATTATAATATTCAAAAAGAATCAACTTTGCATTTGGTT 124748 || ||| | ||||| || | ||||| || ||||||||||| ||||| |||||| ||||| Sbjct 298437 GAAGATGGCCGAACCTTGGCTGATTACAACATTCAAAAAGAGTCAACATTGCATCTGGTT 298496 Query 124749 TTA 124751 ||| Sbjct 298497 TTA 298499 >seq160 Length=614534 Score = 109 bits (120), Expect = 8e-19 Identities = 98/123 (80%), Gaps = 0/123 (0%) Strand=Plus/Plus Query 124629 CAAGATAAAGAAGGTATACCACCTGATCAACAAAGGCTTATTTTTGCAGGAAAACAATTA 124688 || || || || |||||||| || ||||||||||| | |||||||| ||||| || || Sbjct 340132 CAGGACAAGGAGGGTATACCCCCAGATCAACAAAGATTGATTTTTGCTGGAAAGCAGTTG 340191 Query 124689 GAGGATAGTCGAACATTAGAAGATTATAATATTCAAAAAGAATCAACTTTGCATTTGGTT 124748 || ||| ||||||| ||| ||||| || ||||||||||| ||||| ||||| ||||| Sbjct 340192 GAAGATGGTCGAACCCTAGCTGATTACAACATTCAAAAAGAGTCAACACTGCATCTGGTT 340251 Query 124749 TTA 124751 ||| Sbjct 340252 TTA 340254 >seq19 Length=4066982 Score = 107 bits (118), Expect = 3e-18 Identities = 97/122 (80%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 124629 CAAGATAAAGAAGGTATACCACCTGATCAACAAAGGCTTATTTTTGCAGGAAAACAATTA 124688 || ||||| || |||||||| || ||||| || ||||| || |||||||| || || || Sbjct 710567 CAGGATAAGGAGGGTATACCTCCAGATCAGCAGAGGCTAATATTTGCAGGGAAGCAGTTG 710508 Query 124689 GAGGATAGTCGAACATTAGAAGATTATAATATTCAAAAAGAATCAACTTTGCATTTGGTT 124748 |||||| ||||||| |||| || || || ||||| |||||||||||| | || ||||| Sbjct 710507 GAGGATGGTCGAACCTTAGCTGACTACAACATTCAGAAAGAATCAACTCTCCACCTGGTT 710448 Query 124749 TT 124750 || Sbjct 710447 TT 710446 >seq71 Length=983643 Score = 104 bits (114), Expect = 4e-17 Identities = 96/122 (79%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 124629 CAAGATAAAGAAGGTATACCACCTGATCAACAAAGGCTTATTTTTGCAGGAAAACAATTA 124688 || || || || || ||||| || ||||| |||||| | |||||||| || ||||| || Sbjct 265157 CAGGACAAGGAGGGGATACCCCCAGATCAGCAAAGGTTGATTTTTGCTGGGAAACAGTTG 265216 Query 124689 GAGGATAGTCGAACATTAGAAGATTATAATATTCAAAAAGAATCAACTTTGCATTTGGTT 124748 || ||| ||||||| ||| ||||| |||||||||||||| |||||| | || ||||| Sbjct 265217 GAAGATGGTCGAACCCTAGCTGATTACAATATTCAAAAAGAGTCAACTCTTCACCTGGTT 265276 Query 124749 TT 124750 || Sbjct 265277 TT 265278 >seq12 Length=28800575 Score = 104 bits (114), Expect = 4e-17 Identities = 162/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGA-AGCAAA 124597 ||||| || ||| | ||||| || || || || || || ||| |||| | || ||| Sbjct 14035564 ATGCAGATCTTTGTGAAGACCCTCACTGGGAAGACCATCACTCTAGAAGTGGAGAGCTCG 14035623 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 || || || |||| | || || || |||||||| |||||||| || |||||||| Sbjct 14035624 -GACACCATCGATAATGTCAAGGCCAAGATCCAAGATAAGGAAGGTATTCCTCCTGATCA 14035682 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 ||||| ||||||||||| ||||| || | |||||| | || || || | || ||||| Sbjct 14035683 GCAAAGACTTATTTTTGCTGGAAAGCAGCTTGAGGATGGGCGTACTTTGGCGGACTATAA 14035742 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGT 124766 ||| || || || || ||| | ||| | || | || | || |||||| Sbjct 14035743 TATCCAGAAGGAGTCCACTCTTCATCTTGTCCTCCGCCTTCGTGGTGGT 14035791 Score = 100 bits (110), Expect = 4e-16 Identities = 152/215 (71%), Gaps = 1/215 (0%) Strand=Plus/Plus Query 124535 TACA-ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAG 124593 |||| ||||| || ||| | ||||| || || ||||| || || ||| | || ||||| Sbjct 14032691 TACAGATGCAGATCTTTGTTAAGACTCTGACTGGCAAGACCATCACTCTTGAAGTTGAAA 14032750 Query 124594 CAAATGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTG 124653 ||||||||| |||| | || || || ||||| || || || || || || | Sbjct 14032751 GCTCTGATACAATCGATAATGTGAAGGCCAAGATCCAAGACAAGGAGGGCATCCCCCCAG 14032810 Query 124654 ATCAACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATT 124713 | ||||| ||||||||||| || || ||||| | |||||| |||| ||| | | || | Sbjct 14032811 ACCAACAGAGGCTTATTTTCGCCGGCAAACAGCTTGAGGATGGTCGCACACTGGCTGACT 14032870 Query 124714 ATAATATTCAAAAAGAATCAACTTTGCATTTGGTT 124748 | || ||||| ||||| || || | ||| | ||| Sbjct 14032871 ACAACATTCAGAAAGAGTCGACACTCCATCTTGTT 14032905 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 755077695964800