Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Elaeis_20guineensis_20[refseq_20GCF_5F000442705.1_202013-08-13] 40,061 sequences; 1,535,178,229 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq2 113 5e-20 seq1 113 5e-20 seq6 111 2e-19 seq12 109 6e-19 seq5 107 2e-18 seq14 98.7 1e-15 seq10 96.9 4e-15 seq29159 95.1 1e-14 >seq2 Length=65558141 Score = 113 bits (124), Expect = 5e-20 Identities = 144/196 (73%), Gaps = 2/196 (1%) Strand=Plus/Plus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 |||||| || || |||||||| || || || || |||| || |||||||| || ||||| Sbjct 62822535 CTCCTTCTGGATGTTGTAATCGGCGAGGGTGCGGCCGTCCTCGAGCTGCTTTCCGGCGAA 62822594 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111 ||||| ||||||||||| | || | || |||||||||| ||| || |||| ||| Sbjct 62822595 GATGAGGCGCTGCTGGTCTGGTGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGA-CGT 62822653 Query 43112 CG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 43170 | | | |||||| || || || |||| || || || || ||||| || ||||| | Sbjct 62822654 TGTCGATGGTGTCGGAGGACTCTACCTCGAGGGTAATAGTCTTCCCCGTGAGGGTCTTCA 62822713 Query 43171 CAAAGATTTGCATTTT 43186 | ||||| ||||| || Sbjct 62822714 CGAAGATCTGCATGTT 62822729 >seq1 Length=68435666 Score = 113 bits (124), Expect = 5e-20 Identities = 145/196 (74%), Gaps = 8/196 (4%) Strand=Plus/Plus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 ||||||||| ||||||||||| || ||||||| | |||| || || ||||| || ||||| Sbjct 29766323 CTCCTTTTGGATATTGTAATCCGCGAGAGTCCTCCCGTCCTCCAGTTGCTTCCCGGCGAA 29766382 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111 || || | ||||||||| | ||| | | |||||| ||| ||| || || | ||| Sbjct 29766383 GATCAGCCTCTGCTGGTCCGGCGGAATCCCCTCCTTATCCTGGATCTTCGCCTTCA-CGT 29766441 Query 43112 CG-CCACCGTGTC---GCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCT 43167 | | | ||||| |||| ||||| |||| ||||| || || ||||| || |||| Sbjct 29766442 TGTCAATAGTGTCCGAGCTC---TCCACCTCGAGGGTGATCGTCTTACCCGTGAGAGTCT 29766498 Query 43168 TTACAAAGATTTGCAT 43183 | || ||||||||||| Sbjct 29766499 TCACGAAGATTTGCAT 29766514 Score = 111 bits (122), Expect = 2e-19 Identities = 163/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016 ||||| || | || | |||||| || | || |||||| || ||||| || || || Sbjct 29766516 CCTCCCCTAAGGCGGAGCACCAAGTGGAGGGTCGACTCCTTCTGGATATTATAGTCGGCG 29766575 Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076 || |||| |||| || ||||| || || ||||| ||||| | ||||||||| | || Sbjct 29766576 AGGGTCCTGCCGTCTTCAAGCTGTTTCCCGGCGAAGATGAGCCTCTGCTGGTCCGGGGGG 29766635 Query 43077 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCAC-CGTGTCGCTCGATTCCAC 43135 | || |||||||||| ||| || |||| ||| | || |||||| || || || Sbjct 29766636 ATGCCCTCCTTGTCCTGGATCTTCGCCTTGA-CGTTGTCAATCGTGTCCGAGGACTCGAC 29766694 Query 43136 ATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 || | |||||||||||||| || || ||||| || ||||| ||||| Sbjct 29766695 CTCCAGGGTGATGGTTTTGCCGGTGAGGGTCTTGACGAAGATCTGCAT 29766742 >seq6 Length=44357769 Score = 111 bits (122), Expect = 2e-19 Identities = 142/193 (74%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 |||||||||||| || ||||| || || || || |||| || |||||||| || ||||| Sbjct 21861014 CTCCTTTTGAATGTTATAATCGGCGAGGGTGCGGCCGTCTTCCAGCTGCTTGCCGGCGAA 21861073 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111 || || ||||||||||| | || | || ||| || ||| ||| || |||| ||| Sbjct 21861074 GATCAGACGCTGCTGGTCCGGGGGGATGCCCTCTTTATCCTGGATCTTGGCCTTGA-CGT 21861132 Query 43112 CG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 43170 | | | |||||| ||| || || || | |||||||| ||||| || || ||||| | Sbjct 21861133 TGTCGATCGTGTCCGACGACTCGACCTCCAAAGTGATGGTCTTGCCGGTGAGGGTCTTGA 21861192 Query 43171 CAAAGATTTGCAT 43183 | ||||| ||||| Sbjct 21861193 CGAAGATCTGCAT 21861205 Score = 86.0 bits (94), Expect = 7e-12 Identities = 64/75 (85%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 60057 AAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 60116 |||||||| | || || ||| ||||||||| |||| |||||||||||||||| |||| Sbjct 5749452 AAAAATTTACGCCGTTGCCGGGGATCGAACCCGGGTCACCCGCGTGACAGGCGGGAATAC 5749511 Query 60117 TCACCACTATACTAC 60131 ||||||||||||||| Sbjct 5749512 TCACCACTATACTAC 5749526 Score = 86.0 bits (94), Expect = 7e-12 Identities = 152/215 (71%), Gaps = 10/215 (5%) Strand=Plus/Plus Query 42974 CACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATC 43033 ||||| ||| | || ||| ||||| || || ||||| || || || || |||| || Sbjct 21860768 CACCAGATGAAGAGTAGACTCTTTTTGGATGTTATAATCGGCGAGGGTGCGACCGTCCTC 21860827 Query 43034 TAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCAT 43093 || ||||| || ||||| || || ||||||||||| | ||| | | ||||| | | | Sbjct 21860828 AAGTTGCTTTCCGGCGAAGATCAGACGCTGCTGGTCCGGCGGAATACCTTCCTTAT-CTT 21860886 Query 43094 GATTTTTTG-TTTGAGCGTCG-CCACCGTGTC---GCTCGATTCCACATCGACCGTGATG 43148 || | || | |||| ||| | | | |||||| |||| || || || | |||||| Sbjct 21860887 GAATCTTGGCCTTGA-CGTTGTCGATCGTGTCCGAGCTC---TCGACCTCCAAGGTGATG 21860942 Query 43149 GTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 || ||||| || || ||||| || ||||| ||||| Sbjct 21860943 GTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCAT 21860977 >seq12 Length=28800575 Score = 109 bits (120), Expect = 6e-19 Identities = 152/212 (72%), Gaps = 6/212 (3%) Strand=Plus/Minus Query 42975 ACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCT 43034 |||||||| | || ||||||||||| ||||| || ||||| || ||| | || || Sbjct 14035544 ACCAAATGAAGAGTAGATTCCTTTTGAATGTTGTAGTCTGCCAGCGTGCGCCCATCCTCC 14035485 Query 43035 AGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 43094 ||||| |||||||| || || || |||||||| || | || | || |||||| ||| | Sbjct 14035484 AGCTGTTTACCAGCAAAGATAAGCCGCTGCTGATCTGGTGGGATGCCCTCCTTATCCTGG 14035425 Query 43095 ATTTTTTGTTTGAGCGTCGCCACCGTGTC---GCTCGATTCCACATCGACCGTGATGGTT 43151 ||||| || | | | | ||||| |||| || || |||| |||||||| Sbjct 14035424 ATTTTAGCCTTTACATTGTCAATGGTGTCAGAGCTC---TCTACCTCGAGGGTGATGGTC 14035368 Query 43152 TTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 || || || || |||||||||||||| ||||| Sbjct 14035367 TTTCCAGTGAGGGTCTTTACAAAGATCTGCAT 14035336 Score = 100 bits (110), Expect = 3e-16 Identities = 150/212 (71%), Gaps = 6/212 (3%) Strand=Plus/Minus Query 42975 ACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCT 43034 |||||||| | || ||||||||||| ||||| || ||||| || ||| | || || Sbjct 14046584 ACCAAATGAAGAGTAGATTCCTTTTGAATGTTGTAGTCTGCCAGTGTGCGCCCATCCTCC 14046525 Query 43035 AGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 43094 ||||| |||||||| || ||||| |||||||| || | || | || |||||| ||| | Sbjct 14046524 AGCTGTTTACCAGCAAAGATGAGACGCTGCTGATCTGGTGGGATGCCCTCCTTATCCTGG 14046465 Query 43095 ATTTTTTGTTTGAGCGTCGCCACCGTGTC---GCTCGATTCCACATCGACCGTGATGGTT 43151 || || || | | | | ||||| |||| || || || | |||||||| Sbjct 14046464 ATCTTAGCCTTTACATTGTCAATGGTGTCGGAGCTC---TCTACCTCAAGGGTGATGGTC 14046408 Query 43152 TTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 || || || || ||||| |||||||| ||||| Sbjct 14046407 TTTCCGGTAAGAGTCTTCACAAAGATCTGCAT 14046376 Score = 91.5 bits (100), Expect = 2e-13 Identities = 148/212 (70%), Gaps = 6/212 (3%) Strand=Plus/Minus Query 42975 ACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCT 43034 |||||||| | || ||||||||||| ||||| || |||| || ||| | || || Sbjct 14079121 ACCAAATGAAGAGTAGATTCCTTTTGAATGTTGTAGTCTGCCAACGTGCGCCCATCCTCC 14079062 Query 43035 AGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 43094 | ||| |||||||| || ||||| |||||||| || | || | || |||||| ||| | Sbjct 14079061 AACTGTTTACCAGCAAAGATGAGACGCTGCTGATCCGGTGGGATGCCCTCCTTATCCTGG 14079002 Query 43095 ATTTTTTGTTTGAGCGTCGCCACCGTGTC---GCTCGATTCCACATCGACCGTGATGGTT 43151 || || || | | | | ||||| |||| || || || | |||||||| Sbjct 14079001 ATCTTAGCCTTTACATTGTCAATGGTGTCAGAGCTC---TCTACCTCAAGGGTGATGGTC 14078945 Query 43152 TTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 || || || || ||||| |||||||| ||||| Sbjct 14078944 TTTCCAGTGAGGGTCTTCACAAAGATCTGCAT 14078913 >seq5 Length=51955539 Score = 107 bits (118), Expect = 2e-18 Identities = 143/196 (73%), Gaps = 2/196 (1%) Strand=Plus/Minus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 |||||| || || || || || || || || || |||| || ||||| || || ||||| Sbjct 10328005 CTCCTTCTGGATGTTATAGTCGGCGAGGGTGCGGCCGTCTTCGAGCTGTTTTCCGGCGAA 10327946 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111 ||||| ||||||||||| | || | || ||| |||||| ||| || |||| ||| Sbjct 10327945 GATGAGGCGCTGCTGGTCCGGGGGGATGCCCTCTTTGTCCTGGATCTTGGCCTTGA-CGT 10327887 Query 43112 CG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 43170 | | | |||||| || || || |||| |||||||| |||||||| || ||||| | Sbjct 10327886 TGTCGATCGTGTCCGAGGACTCGACCTCGAGGGTGATGGTCTTGCCCGTCAGAGTCTTCA 10327827 Query 43171 CAAAGATTTGCATTTT 43186 | ||||| ||||| || Sbjct 10327826 CGAAGATCTGCATCTT 10327811 Score = 84.2 bits (92), Expect = 2e-11 Identities = 64/76 (84%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 60056 GAAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATA 60115 ||||| |||| || || ||| ||||||||| |||| |||||||||||||||| ||| Sbjct 48879283 GAAAACATTTCGCCGTTGCCGGGGATCGAACCCGGGTCGCCCGCGTGACAGGCGGGAATA 48879224 Query 60116 CTCACCACTATACTAC 60131 |||||||||||||||| Sbjct 48879223 CTCACCACTATACTAC 48879208 >seq14 Length=24379743 Score = 98.7 bits (108), Expect = 1e-15 Identities = 156/220 (71%), Gaps = 8/220 (4%) Strand=Plus/Minus Query 42969 CGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCG 43028 |||| |||||| || | || ||||| ||||| |||||||| ||||| || || | Sbjct 11039430 CGCAGCACCAAGTGAAGGGTAGATTCCTTCTGAATGTTGTAATCTGCCAGCGTGCGTCCA 11039371 Query 43029 TCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTG 43088 || || || ||||| ||||| || || || ||||||||||| | || | | |||||| Sbjct 11039370 TCCTCAAGTTGCTTTCCAGCAAAGATAAGACGCTGCTGGTCTGGAGGGATTCCTTCCTTG 11039311 Query 43089 TCCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTC---GCTCGATTCCACATCGACCGT 43144 ||| ||| | |||| |||| | | | ||||| |||| ||||| || | || Sbjct 11039310 TCC-TGAATCTTTGCCTTGACATTATCAATGGTGTCAGAGCTC---TCCACCTCCAAAGT 11039255 Query 43145 GATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATT 43184 ||| || || || || || ||||| |||||||| |||||| Sbjct 11039254 GATCGTCTTCCCTGTCAGAGTCTTGACAAAGATCTGCATT 11039215 >seq10 Length=31890735 Score = 96.9 bits (106), Expect = 4e-15 Identities = 152/214 (71%), Gaps = 8/214 (4%) Strand=Plus/Plus Query 42974 CACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATC 43033 |||||| || | || ||||||||| || || ||||| ||||| || || | || || Sbjct 15231379 CACCAAGTGAAGAGTAGACTCCTTTTGGATGTTATAATCCGCCAGGGTGCGGCCATCCTC 15231438 Query 43034 TAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCAT 43093 || ||||| ||||| || || | ||||||||||| | || | || ||||||||| | Sbjct 15231439 CAGTTGCTTTCCAGCAAAGATCAAACGCTGCTGGTCCGGAGGAATGCCTTCCTTGTCC-T 15231497 Query 43094 GATTTTTTGTTTGAGCGTCG-CCACCGTGTC---GCTCGATTCCACATCGACCGTGATGG 43149 || |||| | | ||| | | | |||||| |||| || || || | ||||||| Sbjct 15231498 GAATTTTAGCCTTCACGTTGTCAATCGTGTCCGAGCTC---TCGACCTCAAGAGTGATGG 15231554 Query 43150 TTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 | || || || || ||||| |||||||| ||||| Sbjct 15231555 TCTTCCCAGTGAGGGTCTTGACAAAGATCTGCAT 15231588 Score = 86.0 bits (94), Expect = 7e-12 Identities = 114/156 (73%), Gaps = 2/156 (1%) Strand=Plus/Plus Query 43029 TCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTG 43088 || || |||||||| ||||| || || | ||||||||||| | || | || ||||||| Sbjct 15232353 TCCTCGAGCTGCTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGGGGGATGCCCTCCTTG 15232412 Query 43089 TCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCGACCGTGAT 43147 ||| ||| ||| |||| ||| | | | || || || ||||| |||| ||||| Sbjct 15232413 TCCTGGATCTTTGCCTTGA-CGTTGTCAATGGTATCCGAGGACTCCACCTCGAGGGTGAT 15232471 Query 43148 GGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 ||| ||||| || || ||||| || ||||| ||||| Sbjct 15232472 GGTCTTGCCAGTGAGGGTCTTGACGAAGATCTGCAT 15232507 >seq29159 Length=2312 Score = 95.1 bits (104), Expect = 1e-14 Identities = 141/196 (72%), Gaps = 8/196 (4%) Strand=Plus/Minus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 ||| || || |||||||| ||||||| ||| || | || || || || || ||||| || Sbjct 2181 CTCTTTCTGGATATTGTAGTCAGCCAAAGTGCGACCATCCTCAAGTTGTTTGCCAGCAAA 2122 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCG 43110 ||||| | ||||||||||| || | || |||||||||| ||| | || | || | Sbjct 2121 AATGAGCCTCTGCTGGTCGGGAGGGATGCCCTCCTTGTCC-TGAATCTTAGCCTTCACAT 2063 Query 43111 TCGCCACCGTGTC---GCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCT 43167 | | | ||| || |||| || || || | |||||||| ||||| || || |||| Sbjct 2062 TATCAATCGTATCAGAGCTC---TCAACTTCCAGGGTGATGGTCTTGCCAGTAAGGGTCT 2006 Query 43168 TTACAAAGATTTGCAT 43183 | |||||||| ||||| Sbjct 2005 TCACAAAGATCTGCAT 1990 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571531255189080