Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Elaeis_20guineensis_20[refseq_20GCF_5F000442705.1_202013-08-13] 40,061 sequences; 1,535,178,229 total letters Query= NC_002520.1 Length=232392 Score E Sequences producing significant alignments: (Bits) Value seq389 100 4e-16 seq71 96.9 5e-15 seq160 95.1 2e-14 >seq389 Length=334988 Score = 100 bits (110), Expect = 4e-16 Identities = 106/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 146048 GTTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCT 146107 |||||||| ||||| ||||| |||| ||| || || || ||||| || || ||||| Sbjct 298516 GTTCCACCCCTAAGCCTTAAAACCAGATGCAATGTTGACTCTTTTTGAATGTTGTAATCA 298457 Query 146108 GAAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGA 146167 | | |||| || ||| || || ||||||||||| |||||||||||||| ||||| || Sbjct 298456 GCCAAGGTTCGGCCATCTTCCAACTGTTTTCCAGCGAAAATCAATCTTTGTTGATCTGGG 298397 Query 146168 GGAATTCCTTCTTTATCTTG 146187 || || || || || || || Sbjct 298396 GGTATACCCTCCTTGTCCTG 298377 >seq71 Length=983643 Score = 96.9 bits (106), Expect = 5e-15 Identities = 106/141 (75%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 146047 CGTTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATC 146106 ||||||||| ||||| || || |||| || | ||| || ||||| ||||| ||||| Sbjct 265297 CGTTCCACCCCTAAGCCTCAAAACCAGGTGAAGAGTTGACTCTTTTTGAATATTGTAATC 265238 Query 146107 TGAAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGG 146166 | || |||| | ||| || || ||||| |||||||||||||| ||||||||||| || Sbjct 265237 AGCTAGGGTTCGACCATCTTCCAACTGTTTCCCAGCAAAAATCAACCTTTGCTGATCTGG 265178 Query 146167 AGGAATTCCTTCTTTATCTTG 146187 || || || || || || || Sbjct 265177 GGGTATCCCCTCCTTGTCCTG 265157 >seq160 Length=614534 Score = 95.1 bits (104), Expect = 2e-14 Identities = 105/140 (75%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 146048 GTTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCT 146107 |||||||| ||||| ||||| |||| ||| | || || ||||| || || ||||| Sbjct 340271 GTTCCACCCCTAAGCCTTAAAACCAGATGCAGTGTTGACTCTTTTTGAATGTTGTAATCA 340212 Query 146108 GAAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGA 146167 | || |||| | ||| || || || ||||||||||||||||||||||| ||||| || Sbjct 340211 GCTAGGGTTCGACCATCTTCCAACTGCTTTCCAGCAAAAATCAATCTTTGTTGATCTGGG 340152 Query 146168 GGAATTCCTTCTTTATCTTG 146187 || || || || || || || Sbjct 340151 GGTATACCCTCCTTGTCCTG 340132 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 743154069861120