Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Elaeis_20guineensis_20[refseq_20GCF_5F000442705.1_202013-08-13] 40,061 sequences; 1,535,178,229 total letters Query= NC_003083.1 Length=118584 Score E Sequences producing significant alignments: (Bits) Value seq12 95.1 9e-15 seq160 86.0 5e-12 seq389 82.4 6e-11 seq71 82.4 6e-11 >seq12 Length=28800575 Score = 95.1 bits (104), Expect = 9e-15 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 || |||| |||| || || | ||| ||||| || |||||||| ||||||||||||||| Sbjct 14045737 CCACCCCTGAGTCGCAGGACAAGGTGGAGTGTCGACTCTTTTTGGATGTTGTAGTCGGCC 14045678 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | || | ||| |||| |||||| || ||| |||| || || || ||||| ||| Sbjct 14045677 AAAGTGCGGCCATCCTCCAGTTGTTTTCCAGCAAAGATGAGCCTCTGCTGATCTGGGGGA 14045618 Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTT 18278 | ||| ||||| || ||| | ||| || | ||| |||||| | ||| | Sbjct 14045617 ATGCCCTCCTTGTCCTGAATCTTAGCCTTCACATTATCAATTGTGTCAGAGCTCTCAACT 14045558 Query 18279 TCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 || | |||||| | ||||| || | || || ||||| || ||||| Sbjct 14045557 TCCAGGGTGATCGTCTTGCCAGTAAGGGTCTTCACAAAGATCTGCAT 14045511 Score = 86.0 bits (94), Expect = 5e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 18114 AGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCT 18173 || |||| ||||| || ||||| ||||||||||||||||| |||| || | ||| Sbjct 14035547 AGGACCAAATGAAGAGTAGATTCCTTTTGAATGTTGTAGTCTGCCAGCGTGCGCCCATCC 14035488 Query 18174 TCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCG 18233 |||| ||||| || ||| ||||||| | || ||||| || | ||| |||||||| Sbjct 14035487 TCCAGCTGTTTACCAGCAAAGATAAGCCGCTGCTGATCTGGTGGGATGCCCTCCTTATCC 14035428 Query 18234 GCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTT 18293 |||| ||| || | ||| |||||| | ||| || | ||||||| | Sbjct 14035427 TGGATTTTAGCCTTTACATTGTCAATGGTGTCAGAGCTCTCTACCTCGAGGGTGATGGTC 14035368 Query 18294 TTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 || || || | || |||||||| || ||||| Sbjct 14035367 TTTCCAGTGAGGGTCTTTACAAAGATCTGCAT 14035336 Score = 86.0 bits (94), Expect = 5e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 18114 AGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCT 18173 || |||| ||||| || ||||| ||||||||||||||||| |||| || | ||| Sbjct 14079124 AGGACCAAATGAAGAGTAGATTCCTTTTGAATGTTGTAGTCTGCCAACGTGCGCCCATCC 14079065 Query 18174 TCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCG 18233 ||||| ||||| || ||| |||| || | || |||||| || | ||| |||||||| Sbjct 14079064 TCCAACTGTTTACCAGCAAAGATGAGACGCTGCTGATCCGGTGGGATGCCCTCCTTATCC 14079005 Query 18234 GCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTT 18293 || | ||| || | ||| |||||| | ||| |||| ||||||| | Sbjct 14079004 TGGATCTTAGCCTTTACATTGTCAATGGTGTCAGAGCTCTCTACCTCAAGGGTGATGGTC 14078945 Query 18294 TTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 || || || | || || ||||| || ||||| Sbjct 14078944 TTTCCAGTGAGGGTCTTCACAAAGATCTGCAT 14078913 Score = 84.2 bits (92), Expect = 2e-11 Identities = 141/204 (69%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 18122 GTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAATTG 18181 ||| |||||||| ||||| || ||||||||||| |||| || | ||| || | ||| Sbjct 14045258 GTGGAGTGTTGACTCTTTCTGGATGTTGTAGTCAGCCAAAGTGCGGCCATCCTCAAGTTG 14045199 Query 18182 TTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCAATTTG 18241 |||||| ||| |||| || || || || || ||| | ||| |||||||| || | Sbjct 14045198 TTTGCCAGCAAAGATGAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTATCCTGGATCTT 14045139 Query 18242 TTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTTGCCGGT 18301 ||| || | ||| ||||| | ||| ||||| ||||||| | ||||| || Sbjct 14045138 GGCCTTCACATTATCAATGGTGTCCGAGCTCTCAACTTCAAGGGTGATGGTCTTGCCAGT 14045079 Query 18302 CAATGTTTTTACAAAAATTTGCAT 18325 | || || ||||| || ||||| Sbjct 14045078 GAGAGTCTTAACAAAGATCTGCAT 14045055 >seq160 Length=614534 Score = 86.0 bits (94), Expect = 5e-12 Identities = 100/135 (74%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 18098 TCCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGC 18157 ||| |||| || || | |||| || |||||||| ||||||||||||||||| || || Sbjct 340269 TCCACCCCTAAGCCTTAAAACCAGATGCAGTGTTGACTCTTTTTGAATGTTGTAATCAGC 340210 Query 18158 CATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGG 18217 | ||| || ||||||||| || || || ||| | || | |||||||||||| ||| Sbjct 340209 TAGGGTTCGACCATCTTCCAACTGCTTTCCAGCAAAAATCAATCTTTGTTGATCTGGGGG 340150 Query 18218 CACGCCTTCCTTATC 18232 | || ||||| || Sbjct 340149 TATACCCTCCTTGTC 340135 >seq389 Length=334988 Score = 82.4 bits (90), Expect = 6e-11 Identities = 99/135 (73%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 18098 TCCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGC 18157 ||| |||| || || | |||| || | |||||| ||||||||||||||||| || || Sbjct 298514 TCCACCCCTAAGCCTTAAAACCAGATGCAATGTTGACTCTTTTTGAATGTTGTAATCAGC 298455 Query 18158 CATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGG 18217 || ||| | ||||||||| ||||| || || | || | |||||||||||| ||| Sbjct 298454 CAAGGTTCGGCCATCTTCCAACTGTTTTCCAGCGAAAATCAATCTTTGTTGATCTGGGGG 298395 Query 18218 CACGCCTTCCTTATC 18232 | || ||||| || Sbjct 298394 TATACCCTCCTTGTC 298380 >seq71 Length=983643 Score = 82.4 bits (90), Expect = 6e-11 Identities = 99/135 (73%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 18098 TCCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGC 18157 ||| |||| || || | |||| |||||| ||||| ||||||||||| ||||| || || Sbjct 265294 TCCACCCCTAAGCCTCAAAACCAGGTGAAGAGTTGACTCTTTTTGAATATTGTAATCAGC 265235 Query 18158 CATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGG 18217 | ||| || ||||||||| ||||| || ||| | || | ||||| ||||| ||| Sbjct 265234 TAGGGTTCGACCATCTTCCAACTGTTTCCCAGCAAAAATCAACCTTTGCTGATCTGGGGG 265175 Query 18218 CACGCCTTCCTTATC 18232 | || ||||| || Sbjct 265174 TATCCCCTCCTTGTC 265160 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 379158787781445