Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Elaeis_20guineensis_20[refseq_20GCF_5F000442705.1_202013-08-13] 40,061 sequences; 1,535,178,229 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq2 86.0 8e-12 seq3 82.4 1e-10 >seq2 Length=65558141 Score = 86.0 bits (94), Expect = 8e-12 Identities = 152/222 (68%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 63423 CCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCG 63482 || || ||||| | || | ||| || | |||| |||| ||||||||||||| || || Sbjct 13677194 CCCCCTTGATCAACATAACGAGCAGTATCATTAAAAACCCTCAACATTGGAACGATGCCA 13677253 Query 63483 TTTGATATACCATTGGTACCGGAGATATAGCCTCCACTGGCACGAATATTACTAATTGAT 63542 || ||| | ||||| || || |||||| | ||| | ||||||||||| | ||| Sbjct 13677254 TTGGATGTCCCATTTGTCCCACGGATATAACTACCAGTTGCACGAATATTGTGAGCAGAT 13677313 Query 63543 AGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGATG 63602 | || | ||| || || ||| || | || || ||||| || ||||| ||| Sbjct 13677314 ATGCCAACTCCTCCAGCAGATTTGCTTATAACAGCACACTCCTTTAAAGTATCATATATG 13677373 Query 63603 CCTTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTA 63644 || || ||||||||||| ||||| || | || |||||| Sbjct 13677374 CCCTCAATGCTATCATCTTTCATGCAAACCAAGAAGCAGCTA 13677415 >seq3 Length=60060032 Score = 82.4 bits (90), Expect = 1e-10 Identities = 157/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 63662 AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATT 63721 ||| || ||||||||||| ||||| ||||| || || ||||| || ||| | | || Sbjct 21217964 AGTGCCTGCATTAAATAATGTAGGGGAAGCATGAGTGAACCAGCGTTGAGACATCAAATG 21217905 Query 63722 GTACGTCTCAATAGCTGAGTCTATATCC-CATTGATGAATTCCTACTGCGACACGCATTA 63780 ||| || | | | || || ||||| | ||| || ||||| || || || | ||| | Sbjct 21217904 GTATGTTCTGAGAACAGAATCAATATCATCCTTG-TGGATTCCAACAGCAACTCTCATCA 21217846 Query 63781 ACATGTGCTGAGGTCTTTCAACAATTTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCA 63840 ||||||| || || || || || | ||| | |||||| | || ||| | || | Sbjct 21217845 ACATGTGTTGTGGCCTCTCTACTACTTTTCCAGAAACTTTCAAGAGATAAGATCTCTCAA 21217786 Query 63841 AAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 63889 ||| |||||||||||||| | || |||||| | || ||||| || Sbjct 21217785 GAGTCTTAAAACCAAAATAATCATAATCAAAGTCCCTGTCATAAATTAT 21217737 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629502210964080