Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Elaeis_20guineensis_20[refseq_20GCF_5F000442705.1_202013-08-13] 40,061 sequences; 1,535,178,229 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq12 111 2e-19 seq14 102 8e-17 seq10 100 3e-16 seq6 96.9 3e-15 seq5 95.1 1e-14 >seq12 Length=28800575 Score = 111 bits (122), Expect = 2e-19 Identities = 150/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 139556 ACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCG 139615 || || |||| ||||| || ||||||||||| || || || ||||| | || || Sbjct 14046584 ACCAAATGAAGAGTAGATTCCTTTTGAATGTTGTAGTCTGCCAGTGTGCGCCCATCCTCC 14046525 Query 139616 AGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTG 139675 ||||||||||||||| |||| ||||| |||||||| || || ||||| || || || | Sbjct 14046524 AGCTGTTTACCAGCAAAGATGAGACGCTGCTGATCTGGTGGGATGCCCTCCTTATCCTGG 14046465 Query 139676 ATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTG 139735 || || |||| | || | ||||||| | ||| ||||||| ||| | ||||| Sbjct 14046464 ATCTTAGCCTTTACATTGTCAATGGTGTCGGAGCTCTCTACCTCAAGGGTGATGGTCTTT 14046405 Query 139736 CCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||||| | || || || || || ||||| Sbjct 14046404 CCGGTAAGAGTCTTCACAAAGATCTGCAT 14046376 Score = 98.7 bits (108), Expect = 1e-15 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 139556 ACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCG 139615 || || |||| ||||| || ||||||||||| || || || |||| | || || Sbjct 14035544 ACCAAATGAAGAGTAGATTCCTTTTGAATGTTGTAGTCTGCCAGCGTGCGCCCATCCTCC 14035485 Query 139616 AGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTG 139675 ||||||||||||||| |||| || || |||||||| || || ||||| || || || | Sbjct 14035484 AGCTGTTTACCAGCAAAGATAAGCCGCTGCTGATCTGGTGGGATGCCCTCCTTATCCTGG 14035425 Query 139676 ATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTG 139735 ||||| |||| | || | ||||| | | ||| ||||| | ||| | ||||| Sbjct 14035424 ATTTTAGCCTTTACATTGTCAATGGTGTCAGAGCTCTCTACCTCGAGGGTGATGGTCTTT 14035365 Query 139736 CCGGTCAACGTTTTTACGAATATTTGCAT 139764 || || | || ||||| || || ||||| Sbjct 14035364 CCAGTGAGGGTCTTTACAAAGATCTGCAT 14035336 Score = 93.3 bits (102), Expect = 4e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 139556 ACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCG 139615 || || |||| ||||| || ||||||||||| || || || |||| | || || Sbjct 14079121 ACCAAATGAAGAGTAGATTCCTTTTGAATGTTGTAGTCTGCCAACGTGCGCCCATCCTCC 14079062 Query 139616 AGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTG 139675 | ||||||||||||| |||| ||||| |||||||| || || ||||| || || || | Sbjct 14079061 AACTGTTTACCAGCAAAGATGAGACGCTGCTGATCCGGTGGGATGCCCTCCTTATCCTGG 14079002 Query 139676 ATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTG 139735 || || |||| | || | ||||| | | ||| ||||||| ||| | ||||| Sbjct 14079001 ATCTTAGCCTTTACATTGTCAATGGTGTCAGAGCTCTCTACCTCAAGGGTGATGGTCTTT 14078942 Query 139736 CCGGTCAACGTTTTTACGAATATTTGCAT 139764 || || | || || || || || ||||| Sbjct 14078941 CCAGTGAGGGTCTTCACAAAGATCTGCAT 14078913 Score = 82.4 bits (90), Expect = 8e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 139556 ACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCG 139615 || ||||| | || || || || |||||||||||||| || ||| | || || Sbjct 14035316 ACCAAGTGGAGGGTGGATTCCTTCTGAATGTTATAATCAGCCAATGTACGGCCATCCTCA 14035257 Query 139616 AGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTG 139675 ||||| || |||||| |||| || | ||||| || ||||| || || || ||||| | Sbjct 14035256 AGCTGCTTGCCAGCAAAGATGAGCCTCTGCTGGTCTGGAGGAATTCCCTCCTTGTCTTGG 14035197 Query 139676 ATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTG 139735 |||||| ||| | | || | ||| || | | ||| || || | ||| | ||||| Sbjct 14035196 ATTTTTGCTTTAACATTGTCAATTGTATCAGAGCTCTCAACTTCTAGGGTGATGGTCTTT 14035137 Query 139736 CCGGTCAACGTTTTTACGAATATTTGCATA 139765 || || | || || || ||||| |||||| Sbjct 14035136 CCAGTAAGGGTCTTAACAAATATCTGCATA 14035107 >seq14 Length=24379743 Score = 102 bits (112), Expect = 8e-17 Identities = 163/229 (71%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATC-GCT 139596 || |||| ||| || | || ||||||| || ||||||||||| ||||| ||||| ||| Sbjct 11039214 CCACCTCTTAATCGGAGGACCAAGTGAAGAGTGGACTCTTTTTGGATGTTGTAATCTGCT 11039155 Query 139597 CATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 | ||||| || || ||||| || |||||| | ||||| || |||||||| || || Sbjct 11039154 -AATGTGCGACCATCCTCAAGCTGCTTCCCAGCAAATATCAGGCGCTGCTGATCAGGTGG 11039096 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCA 139715 ||||| || || || ||| | |||| ||| | | || | ||||| | | ||| | Sbjct 11039095 GATGCCCTCCTTATC-CTGAATCTTTGCTTTCACATTATCAATGGTGTCTGAGCTCTCAA 11039037 Query 139716 CCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 |||||| ||| | ||||| || || | || || | ||| || ||||| Sbjct 11039036 CCTCAAGGGTGATAGTCTTCCCTGTAAGGGTCTTGATGAAGATCTGCAT 11038988 >seq10 Length=31890735 Score = 100 bits (110), Expect = 3e-16 Identities = 163/232 (70%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 139535 TGGCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCG 139594 ||||| || || | || | || ||||||| |||||||| ||||| ||||||||||| Sbjct 15231359 TGGCCACCACGGAGGCGGAGCACCAAGTGAAGAGTAGACTCCTTTTGGATGTTATAATCC 15231418 Query 139595 CTCATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGA 139654 || |||| || || || || || |||||| |||||| ||| ||||| || ||| Sbjct 15231419 GCCAGGGTGCGGCCATCCTCCAGTTGCTTTCCAGCAAAGATCAAACGCTGCTGGTCCGGA 15231478 Query 139655 GGTATGCCTTCTTTGTCGGTGATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTC 139713 || |||||||| ||||| ||| |||| | || | | || | ||||| | | ||| Sbjct 15231479 GGAATGCCTTCCTTGTC-CTGAATTTTAGCCTTCACGTTGTCAATCGTGTCCGAGCTCTC 15231537 Query 139714 CACCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 ||||||| || | ||||| || || | || || || || || |||||| Sbjct 15231538 GACCTCAAGAGTGATGGTCTTCCCAGTGAGGGTCTTGACAAAGATCTGCATA 15231589 >seq6 Length=44357769 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 139537 GCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCT 139596 ||| || || | ||| | || | ||| | || ||||| |||||||||||||||||| Sbjct 21860978 GCCTCCACGGAGACGGAGGACAAGGTGGAGGGTGGACTCCTTTTGAATGTTATAATCGGC 21861037 Query 139597 CATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 | |||| |||||| ||||| || || || |||||||||| ||||| || || || Sbjct 21861038 GAGGGTGCGGCCGTCTTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCCGGGGG 21861097 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 ||||| ||||| || ||| || || | | || | ||||| | | ||| || Sbjct 21861098 GATGCCCTCTTTATCCTGGATCTTGGCCTTGACGTTGTCGATCGTGTCCGACGACTCGAC 21861157 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||| | || | ||||||||||| | || || ||||| || ||||| Sbjct 21861158 CTCCAAAGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCAT 21861205 Score = 91.5 bits (100), Expect = 1e-13 Identities = 144/204 (71%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 139562 TGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGT 139621 |||| |||||||||||||| |||||||||||| | |||| ||| || || || Sbjct 21860775 TGAAGAGTAGACTCTTTTTGGATGTTATAATCGGCGAGGGTGCGACCGTCCTCAAGTTGC 21860834 Query 139622 TTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTT 139681 || || || |||||||||| ||||| || || || || ||||| || || ||| | || Sbjct 21860835 TTTCCGGCGAAGATCAGACGCTGCTGGTCCGGCGGAATACCTTCCTTATC-TTGAATCTT 21860893 Query 139682 TG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGT 139740 | || | | || | ||||| | | ||| ||||| | ||| | ||||||||||| Sbjct 21860894 GGCCTTGACGTTGTCGATCGTGTCCGAGCTCTCGACCTCCAAGGTGATGGTCTTGCCGGT 21860953 Query 139741 CAACGTTTTTACGAATATTTGCAT 139764 | || || ||||| || ||||| Sbjct 21860954 GAGGGTCTTGACGAAGATCTGCAT 21860977 >seq5 Length=51955539 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627 || ||||| || || |||||||| ||| | |||| ||||||||||||||| || Sbjct 10328010 GTGGACTCCTTCTGGATGTTATAGTCGGCGAGGGTGCGGCCGTCTTCGAGCTGTTTTCCG 10327951 Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTT 139687 || |||| || || ||||| || || || ||||| |||||||| ||| || || Sbjct 10327950 GCGAAGATGAGGCGCTGCTGGTCCGGGGGGATGCCCTCTTTGTCCTGGATCTTGGCCTTG 10327891 Query 139688 AGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTT 139747 | | || | ||||| | || ||| ||||| | ||| | |||||||| |||| || Sbjct 10327890 ACGTTGTCGATCGTGTCCGAGGACTCGACCTCGAGGGTGATGGTCTTGCCCGTCAGAGTC 10327831 Query 139748 TTTACGAATATTTGCAT 139764 || ||||| || ||||| Sbjct 10327830 TTCACGAAGATCTGCAT 10327814 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 495815589751200